Basic Information

Insect: Copidosoma floridanum
Gene Symbol: -
Assembly: GCA_000648655.2
Location: NW:1731041-1742634[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.48 20 5.3 0.1 3 23 22 42 21 42 0.97

2 17 1.7e-06 7.1e-05 22.4 1.5 1 23 48 70 48 70 0.98

3 17 0.00026 0.011 15.6 0.6 1 23 76 98 76 98 0.98

4 17 8.8e-06 0.00037 20.2 0.8 1 23 104 127 104 127 0.97

5 17 3.3e-06 0.00014 21.5 0.6 1 23 133 155 133 155 0.97

6 17 7.8e-06 0.00033 20.4 3.3 1 23 161 183 161 183 0.99

7 17 1.3e-06 5.5e-05 22.8 4.1 3 23 191 211 189 211 0.97

8 17 4.5e-07 1.9e-05 24.3 1.2 1 23 217 239 217 239 0.99

9 17 0.0028 0.12 12.3 6.7 1 23 245 267 245 267 0.99

10 17 2.8e-08 1.2e-06 28.0 2.2 3 23 275 295 273 295 0.97

11 17 4.5e-06 0.00019 21.1 0.1 1 23 301 323 301 323 0.96

12 17 1.6e-07 6.9e-06 25.6 1.0 2 23 330 351 330 351 0.98

13 17 2.2e-06 9e-05 22.1 6.4 1 23 357 379 357 379 0.98

14 17 6.7e-05 0.0028 17.4 6.4 2 23 387 408 386 408 0.96

15 17 9.4e-09 3.9e-07 29.5 1.8 1 23 414 436 414 436 0.99

16 17 5.9e-06 0.00025 20.7 0.2 2 23 443 464 443 464 0.97

17 17 9.1e-09 3.8e-07 29.6 1.4 1 23 470 492 470 492 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.48	20	5.3	0.1	3	23	22	42	21	42	0.97
2	17	1.7e-06	7.1e-05	22.4	1.5	1	23	48	70	48	70	0.98
3	17	0.00026	0.011	15.6	0.6	1	23	76	98	76	98	0.98
4	17	8.8e-06	0.00037	20.2	0.8	1	23	104	127	104	127	0.97
5	17	3.3e-06	0.00014	21.5	0.6	1	23	133	155	133	155	0.97
6	17	7.8e-06	0.00033	20.4	3.3	1	23	161	183	161	183	0.99
7	17	1.3e-06	5.5e-05	22.8	4.1	3	23	191	211	189	211	0.97
8	17	4.5e-07	1.9e-05	24.3	1.2	1	23	217	239	217	239	0.99
9	17	0.0028	0.12	12.3	6.7	1	23	245	267	245	267	0.99
10	17	2.8e-08	1.2e-06	28.0	2.2	3	23	275	295	273	295	0.97
11	17	4.5e-06	0.00019	21.1	0.1	1	23	301	323	301	323	0.96
12	17	1.6e-07	6.9e-06	25.6	1.0	2	23	330	351	330	351	0.98
13	17	2.2e-06	9e-05	22.1	6.4	1	23	357	379	357	379	0.98
14	17	6.7e-05	0.0028	17.4	6.4	2	23	387	408	386	408	0.96
15	17	9.4e-09	3.9e-07	29.5	1.8	1	23	414	436	414	436	0.99
16	17	5.9e-06	0.00025	20.7	0.2	2	23	443	464	443	464	0.97
17	17	9.1e-09	3.8e-07	29.6	1.4	1	23	470	492	470	492	0.99

Sequence Information

Coding Sequence: ATGTTTGAGGACGACAAACAAGATTCAAACCACGAGAACAGCACCGAAGGAAGTTCAATTCTCTGCGATGTGTGTGGAGACTTTTTCATCAGCCTCGCAATTTTCACGAGGCACCAACTTAGCCACTCGGACAACAATCCCTTCTATTGTTCGGTGTGTTGGAAAGCTTTTGTCAGCAAGAGCATGCTAAAGAAGCACACGAGCACCCACATGAGGGAAAAGACCTTCGAGTGCATGCTGTGCTCGCAAAAATTTGCTCGTCTAGCTTATCTCAAAAGCCACGTACTGACCCACACGGGGGAGAAGCCCTTCCGTTGTTCGATGTGCCCACGAGCTTTTGGTAAAAAGGAAAATCTCAAGAACCACACGATGGTCACCCACTCGGACGAAAAGCCCTTTGCGTGCACGGTCTGTGATACGAGGTTCGGCAAAAAGAACAACCTCGTTAACCACATGCGAATCCACACTGGGGAGAAGCCCTACGAGTGCTCGCTGTGCCCCCTGAAGTTCAGGCAAAAGTGCACCCTAACGACCCACATGCGCATACATACCGGCATACCACGTAGCCACTGCACCATCTGCCGAAAGCAATTCGCCGACACGAGCAATCTCAAGAAACACATGAGGACCCACACTGGGGAGAAGCCCTACAGGTGCTCGGTGTGCCAAAAAAGCTACACCACCTCCGGCGGCCTCAAAACACACGTGCGTACCCACGGGGGGGAGAAATCCTTCCAGTGTTCGGAGTGTTCGAGAACCTTCGGGTGTAAGTTCCACCTCAAAAGACACGTGCGCGTTCACACCGAACAAATTTACAGCCACTGTTCCGTGTGCCAAAAGTCATTTGTCAATCCCAGCAACCTAAAGAGGCACATGAGGGTCCACACGGGGGAGAAGCCCTACAAGTGCTCGGATTGTCCGGAGTCTTTCAGACAGAAGATCCAGCTCGAAATTCACGTGGGCGTCCACACGGGCTTGCCTTATGGTCGCTGTGACATCTGTGGAGAGACATTTTTCGACCCGAGCAATTTGAGGAGGCACAAGAAGACTCACGCGAAGGAGAAGCCCTACAAGTGCTCCGATTGTTCGAAGTCATTTGGTCGCAAGTTTCATCTCAAGACTCACATGCGCTTCCACTGCGCCGATGCGGCCCTTTGTCAGTGCTTCGTATGCGACAAGCCATTTAGTAGCCAAAGATGTCTTAGGACGCACATGACGACCCACTCTGGGGAGAAGCCCTTCCAGTGCTCGGATTGTCCGAAATCTTTTAGACTAAAAAGTACCCTCACGAGGCACATGCGCGTACACACGGGCATACCTTATGGCGAGTGTGCCATTTGCCTAAGGTCATTCGTTGGCAGGAGCAATCTTATAAAGCACATGAGGATCCACATGGGGGTGAAGCCCTACAAGTGCTCGGtgtgtgaaaaaagtttttccgtTTCTAGTAATCTTACGAAGCATATGCTGACTCACACGCGTGGAAAGTAA
Protein Sequence: MFEDDKQDSNHENSTEGSSILCDVCGDFFISLAIFTRHQLSHSDNNPFYCSVCWKAFVSKSMLKKHTSTHMREKTFECMLCSQKFARLAYLKSHVLTHTGEKPFRCSMCPRAFGKKENLKNHTMVTHSDEKPFACTVCDTRFGKKNNLVNHMRIHTGEKPYECSLCPLKFRQKCTLTTHMRIHTGIPRSHCTICRKQFADTSNLKKHMRTHTGEKPYRCSVCQKSYTTSGGLKTHVRTHGGEKSFQCSECSRTFGCKFHLKRHVRVHTEQIYSHCSVCQKSFVNPSNLKRHMRVHTGEKPYKCSDCPESFRQKIQLEIHVGVHTGLPYGRCDICGETFFDPSNLRRHKKTHAKEKPYKCSDCSKSFGRKFHLKTHMRFHCADAALCQCFVCDKPFSSQRCLRTHMTTHSGEKPFQCSDCPKSFRLKSTLTRHMRVHTGIPYGECAICLRSFVGRSNLIKHMRIHMGVKPYKCSVCEKSFSVSSNLTKHMLTHTRGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -