Basic Information

Insect: Copidosoma floridanum
Gene Symbol: -
Assembly: GCA_000648655.2
Location: NW:106090-119654[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.018 0.74 9.8 3.5 3 23 2 22 1 22 0.95

2 19 0.0034 0.14 12.0 1.6 1 22 28 49 28 49 0.94

3 19 2.4e-06 9.9e-05 22.0 3.8 1 23 56 78 56 78 0.98

4 19 3.8e-06 0.00016 21.3 2.7 1 23 84 106 84 106 0.97

5 19 1.9e-07 7.8e-06 25.5 1.1 1 23 113 135 113 135 0.98

6 19 3.8e-07 1.6e-05 24.5 3.1 1 23 141 163 141 163 0.98

7 19 6.7e-06 0.00028 20.6 3.0 1 23 169 191 169 191 0.98

8 19 7.5e-09 3.1e-07 29.8 0.6 1 23 197 219 197 219 0.99

9 19 0.00043 0.018 14.9 5.1 1 23 225 247 225 247 0.97

10 19 2.7e-07 1.1e-05 24.9 3.0 1 23 253 275 253 275 0.98

11 19 2.1e-05 0.00087 19.0 5.2 1 23 281 303 281 303 0.96

12 19 3.5e-06 0.00015 21.5 1.4 1 23 309 331 309 331 0.97

13 19 5.4e-07 2.2e-05 24.0 2.7 1 23 337 359 337 359 0.99

14 19 5.5e-07 2.3e-05 24.0 0.3 1 23 365 387 365 387 0.98

15 19 1.6e-07 6.7e-06 25.6 1.8 1 23 393 415 393 415 0.99

16 19 2e-08 8.4e-07 28.5 1.7 1 23 421 443 421 443 0.98

17 19 2.2e-06 9.4e-05 22.1 3.9 1 23 450 472 450 472 0.99

18 19 0.045 1.9 8.5 1.7 3 23 477 499 476 499 0.92

19 19 2.6e-06 0.00011 21.9 8.6 1 23 505 527 505 527 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.018	0.74	9.8	3.5	3	23	2	22	1	22	0.95
2	19	0.0034	0.14	12.0	1.6	1	22	28	49	28	49	0.94
3	19	2.4e-06	9.9e-05	22.0	3.8	1	23	56	78	56	78	0.98
4	19	3.8e-06	0.00016	21.3	2.7	1	23	84	106	84	106	0.97
5	19	1.9e-07	7.8e-06	25.5	1.1	1	23	113	135	113	135	0.98
6	19	3.8e-07	1.6e-05	24.5	3.1	1	23	141	163	141	163	0.98
7	19	6.7e-06	0.00028	20.6	3.0	1	23	169	191	169	191	0.98
8	19	7.5e-09	3.1e-07	29.8	0.6	1	23	197	219	197	219	0.99
9	19	0.00043	0.018	14.9	5.1	1	23	225	247	225	247	0.97
10	19	2.7e-07	1.1e-05	24.9	3.0	1	23	253	275	253	275	0.98
11	19	2.1e-05	0.00087	19.0	5.2	1	23	281	303	281	303	0.96
12	19	3.5e-06	0.00015	21.5	1.4	1	23	309	331	309	331	0.97
13	19	5.4e-07	2.2e-05	24.0	2.7	1	23	337	359	337	359	0.99
14	19	5.5e-07	2.3e-05	24.0	0.3	1	23	365	387	365	387	0.98
15	19	1.6e-07	6.7e-06	25.6	1.8	1	23	393	415	393	415	0.99
16	19	2e-08	8.4e-07	28.5	1.7	1	23	421	443	421	443	0.98
17	19	2.2e-06	9.4e-05	22.1	3.9	1	23	450	472	450	472	0.99
18	19	0.045	1.9	8.5	1.7	3	23	477	499	476	499	0.92
19	19	2.6e-06	0.00011	21.9	8.6	1	23	505	527	505	527	0.99

Sequence Information

Coding Sequence: ATGTGCAAATATTGCAATGATACGTTCTCTAGCCAAACTGAACTTGACAAACACAAACATTTGCATTTGGACAGAAAACATTATAAATGTATCAATTGTGAAAAGTCATTTATTAGCATGAGTGACTTGACAAATCATACTTGTACCCGTACCAGCGAAAAGCCTTACAAATGTCAGTTTTGCCCAAAATCTTATTCTTCGAAACAAAGCTTAAAACGGCACACTCGCTTGCATACACACGAAAAGCCATTTGAGTGTAAAATCTGTAGCAAATCTTTTTCtcaatcatttaatttaaaaatacataataagcaACATATCATAAATGATGAGAATTTTAAATGCAACTATTGCGGTAAGTCATATGCAAAGAAACAGGCTCTAAGGAAACACATTCTCGTCCATTTAGGCGTAAGGCTATATGAATGTAAAATCTGCAAAAAATCTTTCTCTcaaaactgtaatttaaaaGTGCATGCTCGTATCCATACAGGCGAAAGGCCCCATAAATGTGAAATATGCGGCAAATCTTTCCGTCTACTATTTTACTTAACACAGCATACACGAATCCATACACTTGAAAAGCCATATAAATGTGAAATCTGCGACAAATCATTTACTCAAGCCATTACTTTAAAAAGGCATATTCGTATCCATACAGGCGAAAGACCGTTTTCATGTAAAGTCTGTAAAAAATCTTTCACTCAAaactgtaatttaatatttcatactcgTATCCATACAGGCGAGAGGCCCTATGAATGTGAAATATGTGGCAGATCTTTTACTCATAGCTCTACTTTAAAATCGCATACTTATACCCACACAGGTGAAAAGCCACACAAATGTCAAATCTGCGGCAAATCTTTTTCTCAAACTCATACCCTGAAAGTACATACTTTTATCCATACAGGCGAAAAACCTTATTCATGTGATATCTGCAACAAATCGTTTCAGCGAGCATATCAATTAAAAACGCATAATCAAGTTCATACAGGGGAGAAGTTATATAAATGTAGAATTTGTGGAAAATCATTTTCTCATACAGGGACCCTAGTAAAGCATACTCGCATACATACAGGTGAAAAGCCTTACAAATGTGATATTTGCAACAGATCTTTCAATCAAATATCTTATTTAAGAGCCCATATAGCAATCCATACACTTGAAAAGCAATATAAATGTGAAATCTGTGACAGATCTTTTTCTCAATCATATTATTTATCGACACACACTCGTATTCATACAGGCGAAAAGCCGTACAAATGTAAAATCTGCGACAAATCCTTTGCTTATAGTTCTAATCTAAGAAAACATACTTTGGTCCATGACAAAATCAACCAATGCTTTAAATGCGACTATTGCGGCAAGTcttttactgataaaaacaagattataaGGCACCTACATACTCACATAGAAAAATCATGTGATCGCAAAATCTGTGGTGAATCTCTTTTTGACAAATGTAATCTGAAATCTCATAGTCTAGTTCATAACAGCGATCGACTCTATAGATGCCACGAATGcggtaaattttttactgaaaaacataATCTCATACATCATACGCGGACACATACTAGCGGAAGTATAATTTAA
Protein Sequence: MCKYCNDTFSSQTELDKHKHLHLDRKHYKCINCEKSFISMSDLTNHTCTRTSEKPYKCQFCPKSYSSKQSLKRHTRLHTHEKPFECKICSKSFSQSFNLKIHNKQHIINDENFKCNYCGKSYAKKQALRKHILVHLGVRLYECKICKKSFSQNCNLKVHARIHTGERPHKCEICGKSFRLLFYLTQHTRIHTLEKPYKCEICDKSFTQAITLKRHIRIHTGERPFSCKVCKKSFTQNCNLIFHTRIHTGERPYECEICGRSFTHSSTLKSHTYTHTGEKPHKCQICGKSFSQTHTLKVHTFIHTGEKPYSCDICNKSFQRAYQLKTHNQVHTGEKLYKCRICGKSFSHTGTLVKHTRIHTGEKPYKCDICNRSFNQISYLRAHIAIHTLEKQYKCEICDRSFSQSYYLSTHTRIHTGEKPYKCKICDKSFAYSSNLRKHTLVHDKINQCFKCDYCGKSFTDKNKIIRHLHTHIEKSCDRKICGESLFDKCNLKSHSLVHNSDRLYRCHECGKFFTEKHNLIHHTRTHTSGSII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -