Basic Information

Insect: Copidosoma floridanum
Gene Symbol: -
Assembly: GCA_000648655.2
Location: NW:3438-9057[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 9.3e-05 0.0039 17.0 8.5 1 23 23 45 23 45 0.98

2 28 0.0023 0.098 12.6 0.3 3 23 53 73 51 73 0.98

3 28 1.3e-05 0.00056 19.6 3.6 1 23 79 101 79 101 0.98

4 28 0.0023 0.098 12.6 0.3 3 23 109 129 107 129 0.98

5 28 1.3e-05 0.00056 19.6 3.6 1 23 135 157 135 157 0.98

6 28 0.0023 0.098 12.6 0.3 3 23 165 185 163 185 0.98

7 28 1.3e-05 0.00056 19.6 3.6 1 23 191 213 191 213 0.98

8 28 0.0023 0.098 12.6 0.3 3 23 221 241 219 241 0.98

9 28 1.8e-05 0.00077 19.2 3.3 1 23 247 269 247 269 0.98

10 28 0.0023 0.098 12.6 0.3 3 23 277 297 275 297 0.98

11 28 1.3e-05 0.00056 19.6 3.6 1 23 303 325 303 325 0.98

12 28 0.0023 0.098 12.6 0.3 3 23 333 353 331 353 0.98

13 28 1.3e-05 0.00056 19.6 3.6 1 23 359 381 359 381 0.98

14 28 0.00015 0.0062 16.3 0.6 3 23 389 409 387 409 0.98

15 28 1.3e-05 0.00056 19.6 3.6 1 23 415 437 415 437 0.98

16 28 0.0011 0.044 13.6 0.3 3 23 445 465 443 465 0.98

17 28 2.3e-05 0.00097 18.9 3.6 1 23 471 493 471 493 0.98

18 28 7e-05 0.0029 17.3 0.7 3 23 501 521 499 521 0.98

19 28 1.3e-05 0.00056 19.6 3.6 1 23 527 549 527 549 0.98

20 28 0.0011 0.044 13.6 0.3 3 23 557 577 555 577 0.98

21 28 2.3e-05 0.00097 18.9 3.6 1 23 583 605 583 605 0.98

22 28 0.00023 0.0094 15.7 0.3 3 23 613 633 611 633 0.98

23 28 2.4e-05 0.001 18.8 2.4 1 23 639 661 639 661 0.97

24 28 0.0049 0.21 11.5 2.1 3 23 669 689 667 689 0.96

25 28 0.0079 0.33 10.9 2.5 3 23 697 718 695 718 0.97

26 28 1.1e-06 4.4e-05 23.1 0.5 1 23 724 747 724 747 0.98

27 28 0.011 0.46 10.4 1.2 1 23 779 802 779 802 0.97

28 28 0.6 25 5.0 5.9 1 23 804 827 804 827 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	9.3e-05	0.0039	17.0	8.5	1	23	23	45	23	45	0.98
2	28	0.0023	0.098	12.6	0.3	3	23	53	73	51	73	0.98
3	28	1.3e-05	0.00056	19.6	3.6	1	23	79	101	79	101	0.98
4	28	0.0023	0.098	12.6	0.3	3	23	109	129	107	129	0.98
5	28	1.3e-05	0.00056	19.6	3.6	1	23	135	157	135	157	0.98
6	28	0.0023	0.098	12.6	0.3	3	23	165	185	163	185	0.98
7	28	1.3e-05	0.00056	19.6	3.6	1	23	191	213	191	213	0.98
8	28	0.0023	0.098	12.6	0.3	3	23	221	241	219	241	0.98
9	28	1.8e-05	0.00077	19.2	3.3	1	23	247	269	247	269	0.98
10	28	0.0023	0.098	12.6	0.3	3	23	277	297	275	297	0.98
11	28	1.3e-05	0.00056	19.6	3.6	1	23	303	325	303	325	0.98
12	28	0.0023	0.098	12.6	0.3	3	23	333	353	331	353	0.98
13	28	1.3e-05	0.00056	19.6	3.6	1	23	359	381	359	381	0.98
14	28	0.00015	0.0062	16.3	0.6	3	23	389	409	387	409	0.98
15	28	1.3e-05	0.00056	19.6	3.6	1	23	415	437	415	437	0.98
16	28	0.0011	0.044	13.6	0.3	3	23	445	465	443	465	0.98
17	28	2.3e-05	0.00097	18.9	3.6	1	23	471	493	471	493	0.98
18	28	7e-05	0.0029	17.3	0.7	3	23	501	521	499	521	0.98
19	28	1.3e-05	0.00056	19.6	3.6	1	23	527	549	527	549	0.98
20	28	0.0011	0.044	13.6	0.3	3	23	557	577	555	577	0.98
21	28	2.3e-05	0.00097	18.9	3.6	1	23	583	605	583	605	0.98
22	28	0.00023	0.0094	15.7	0.3	3	23	613	633	611	633	0.98
23	28	2.4e-05	0.001	18.8	2.4	1	23	639	661	639	661	0.97
24	28	0.0049	0.21	11.5	2.1	3	23	669	689	667	689	0.96
25	28	0.0079	0.33	10.9	2.5	3	23	697	718	695	718	0.97
26	28	1.1e-06	4.4e-05	23.1	0.5	1	23	724	747	724	747	0.98
27	28	0.011	0.46	10.4	1.2	1	23	779	802	779	802	0.97
28	28	0.6	25	5.0	5.9	1	23	804	827	804	827	0.95

Sequence Information

Coding Sequence: ATGCCCCACTGCAGTACCACGTTTTCAGAAACTGTAACCCAAAGTGATGCTTCCTGCGAGAGGCCCTTCGTCTGCAAATTCTGTCAGAAAACGTTTACATTAAAACACCATCTTACAAAGCATGAACGAACACATACGGGCGAGAGACCATTTGGATGCAAATCCTGTCCACAGACTTTTGCCCAAAAGATTACTCTTATTGGGCACGAGCGAACACATACAGGCGAGAGGCCCTTCGTCTGCAAATTCTGTCAGAAAACGTTTACATTAAAACAGAATCTTACAACGCATGAGCGGACCCATACGGGCGAGAGACCATTTGGATGCAAATCCTGTCCACAGACTTTTGCCCAAAAGATCACTCTTATTGGGCACGAGCGAACACATACAGGCGAGAGGCCCTTCGTCTGCAAATTCTGTCAGAAAACGTTTACATTAAAACAGAATCTTACAACGCATGAGCGGACCCATACGGGCGAGAGACCATTTGGATGCAAATCCTGTCCACAGACTTTTGCCCAAAAGATCACTCTTATTGGGCACGAGCGAACACATACAGGCGAGAGGCCCTTCGTCTGCAAATTCTGTCAGAAAACGTTTACATTAAAACAGAATCTTACAACGCATGAGCGGACCCATACGGGCGAGAGACCATTTGGATGCAAATCCTGTCCACAGACTTTTGCCCAAAAGATCACTCTTATTGGGCACGAGCGAACACATACAGGCGAGAGGCCCTTCGTCTGCAAATTCTGTCAGAAAACGTTTACAATAAAACAGAATCTTACAACGCATGAGCGGACCCATACGGGCGAGAGACCATTTGGATGCAAATCCTGTCCACAGACTTTTGCCCAAAAGATCACTCTTATTGGGCACGAGCGAACACATACAGGCGAGAGGCCCTTCGTCTGCAAATTCTGTCAGAAAACGTTTACATTAAAACAGAATCTTACAACGCATGAGCGGACCCATACGGGCGAGAGACCATTTGGATGCAAATCCTGTCCACAGACTTTTGCCCAAAAGATCACTCTTATTGGGCACGAGCGAACACATACAGGCGAGAGGCCCTTCGTCTGCAAATTCTGTCAGAAAACGTTTACATTAAAACAGAATCTTACAACGCATGAGCGGACCCATACGGGCGAGAGACCATTTGGATGCAAATCCTGTCCACAGACTTTTGCCCAAAAGATCACTCTTATTAGGCACGAGCGAACACATACAGGCGAGAGGCCCTTCGTCTGCAAATTCTGTCAGAAAACCTTTACATTAAAACAGAATCTTACAACGCATGAGCGGACCCATACGGGCGAGAGACCATTTGGATGCAAATTCTGTCCACAGACTTTTGCCCAAAAGATCACTCTTATTGGGCACGAGCGAACACATACAGGCGAGAGGCCCTTCATCTGCAAATTCTGTCAGAAAACGTTTACATTAAAACAGAATCTTACAACGCATGAGCGGACCCATACGGGCGAGAGACCATTTGGATGCAAATTCTGTCCACAGACTTTTGCCCAAAAGATCACTCTTATTAGGCACGAGCGAACACATACAGGCGAGAGGCCCTTCGTCTGCAAATTCTGTCAGAAAACCTTTACATTAAAACAGAATCTTACAACGCATGAGCGGACCCATACGGGCGAGAGACCATTTGGATGCAAATTCTGTCCACAGACTTTTGCCCAAAAGATCACTCTTATTGGGCACGAGCGAACACATACAGGCGAGAGGCCCTTCATCTGCAAATTCTGTCAGAAAACGTTTACATTAAAACAGAATCTTACAACGCATGAGCGGACCCATACGGGCGAGAGACCATTTGGATGCAAATACTGTCCACAGACTTTTGCCCAAAAGATCACTCTTATTGGGCACGAGCGAACACATACAGGCGAGAGACCCTTTGCATGCAAATCCTGTCCAGAGTCTTTTGCCCACAAGTTCAATCTTACAAGGCACGAGCAAACGCATACGGGCGAAAGGCCCTTCGGCTGTAAATTCTGTCCACAAACATTTTCCCAAAAGTTCAATCGTACAAAGCACGAAGGGACACATACGGGCAAGATGCCCTTTGGCTGCACATTCTGTCCACAGACTTTTGCCTGCAAGTCTTATCTTGTAAGGCATCAGCAAACTCAACATGTAGTTGAGCAAAACTATCGCTGTGCTATGTGTCCACAACCTTTTACGAACAAAACTGATCTTAAGAGGCACTTGCAGACCATCCATTTGAACAAAATGCCCCGCTGCAGTGCCACGTTTTCAGCAACTATAACCCAAAGCGATGCTTCCTGTAATTCTATAGATACTTATCAGTTTAGTCATCAATGTTTATTTTGTTCACAAATTTTCGACTCTATTGGTGATCTTCAAGTGCACTCACGCACTCGCCACATCCACCGCTGCAACACGTGTCCACTCAAATTCAACAAATACATAAGCTTTCTCAAGCACAAACATAGTGTTCACAAAAATCGCTAA
Protein Sequence: MPHCSTTFSETVTQSDASCERPFVCKFCQKTFTLKHHLTKHERTHTGERPFGCKSCPQTFAQKITLIGHERTHTGERPFVCKFCQKTFTLKQNLTTHERTHTGERPFGCKSCPQTFAQKITLIGHERTHTGERPFVCKFCQKTFTLKQNLTTHERTHTGERPFGCKSCPQTFAQKITLIGHERTHTGERPFVCKFCQKTFTLKQNLTTHERTHTGERPFGCKSCPQTFAQKITLIGHERTHTGERPFVCKFCQKTFTIKQNLTTHERTHTGERPFGCKSCPQTFAQKITLIGHERTHTGERPFVCKFCQKTFTLKQNLTTHERTHTGERPFGCKSCPQTFAQKITLIGHERTHTGERPFVCKFCQKTFTLKQNLTTHERTHTGERPFGCKSCPQTFAQKITLIRHERTHTGERPFVCKFCQKTFTLKQNLTTHERTHTGERPFGCKFCPQTFAQKITLIGHERTHTGERPFICKFCQKTFTLKQNLTTHERTHTGERPFGCKFCPQTFAQKITLIRHERTHTGERPFVCKFCQKTFTLKQNLTTHERTHTGERPFGCKFCPQTFAQKITLIGHERTHTGERPFICKFCQKTFTLKQNLTTHERTHTGERPFGCKYCPQTFAQKITLIGHERTHTGERPFACKSCPESFAHKFNLTRHEQTHTGERPFGCKFCPQTFSQKFNRTKHEGTHTGKMPFGCTFCPQTFACKSYLVRHQQTQHVVEQNYRCAMCPQPFTNKTDLKRHLQTIHLNKMPRCSATFSATITQSDASCNSIDTYQFSHQCLFCSQIFDSIGDLQVHSRTRHIHRCNTCPLKFNKYISFLKHKHSVHKNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -