Cflr009953.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Copidosoma floridanum
Gene Symbol
-
Assembly
GCA_000648655.2
Location
NW:2391813-2395239[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.27 11 6.1 2.6 1 15 34 48 34 54 0.84
2 22 1.6e-05 0.00066 19.4 3.2 1 23 63 85 63 85 0.99
3 22 1.7e-05 0.00073 19.2 3.3 1 23 91 113 91 113 0.98
4 22 3.9e-07 1.6e-05 24.5 4.2 1 23 119 141 119 141 0.99
5 22 1.6e-07 6.6e-06 25.7 4.6 1 23 147 169 147 169 0.98
6 22 0.00019 0.0081 16.0 5.7 1 23 175 197 175 197 0.99
7 22 6.8e-05 0.0028 17.4 2.2 1 23 203 225 203 225 0.98
8 22 3.2e-07 1.3e-05 24.7 2.7 1 23 231 253 231 253 0.99
9 22 0.0001 0.0042 16.9 5.0 1 23 259 281 259 281 0.98
10 22 1.8e-07 7.6e-06 25.5 4.9 1 23 287 309 287 309 0.99
11 22 3.1e-05 0.0013 18.5 3.1 1 23 315 337 315 337 0.98
12 22 1.8e-07 7.6e-06 25.5 4.9 1 23 343 365 343 365 0.99
13 22 3.1e-05 0.0013 18.5 3.1 1 23 371 393 371 393 0.98
14 22 1.3e-07 5.6e-06 25.9 3.9 1 23 399 421 399 421 0.99
15 22 4.5e-07 1.9e-05 24.3 4.7 1 23 427 449 427 449 0.99
16 22 0.0001 0.0042 16.9 5.0 1 23 455 477 455 477 0.98
17 22 1.5e-07 6.1e-06 25.8 4.8 1 23 483 505 483 505 0.98
18 22 0.00019 0.0081 16.0 5.7 1 23 511 533 511 533 0.99
19 22 1.2e-06 4.8e-05 23.0 1.9 1 21 539 559 539 560 0.94
20 22 0.012 0.52 10.3 0.4 1 19 567 585 567 586 0.97
21 22 0.012 0.52 10.3 2.8 4 23 651 670 650 670 0.96
22 22 8.6e-06 0.00036 20.2 2.3 1 21 676 696 676 697 0.95

Sequence Information

Coding Sequence
ATGGCCGAAAACAACGACTCTGGCGACACATACGGTAAAGATAGCAGAAGAAATGATGATTCTACAAAGCATGAATGTATCCACACAGAAGAAAACTCTTACAGTTGCAGAGTATGTCACAAAGTTTTTACTGTTAGAAACCACTCATCAGTGCACGCATGTATTTCTACTGTTAATAAGCATCACTACAAGTGCAAATTTTGTTCCactagtttttctcaaaaattcgATTTAACGTGGCATGAGCAGACTCACGCAGGTGACAAGCCGTACAGCTGCAAGcaatgtttaaaaagttttagtcGGAAATTCAGTCTCAAAGTGCACGAGCAGACTCATTCGGGTGAGAAGCCCTACAGCTGCAAACACTGTTCACAAAGTTTTGCTGATAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAATTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGAGAAGCCCTACAGTTGTGAACACTGTTTGAAaagttatactaaaaaaaaatatcttaccaCGCACGAGCGGACTCATTCAGGTGATATGACCTACAGCTGCAAATACTGTTTACAAAGTTTTAGTCGGGAATTCAGTCTCAAAGTGCACGAGCAGACTCATTCGGGTGAGAAGCCCTACAGCTGCAAACaatgttcaaaaagttttgctgaTAAATCCACTCTCACAAAACACGAGCGGACTCATACAGGTGATATGCCCTACAGCTGTAAACACTGTTTACAAAGTTTTAGTCGGAAATTCAGTCTTAAAGTGCACGAGCAGACTCATTCAGGTGAGAAGCCCTACAGCTGCAAACaatgttcaaaaagttttactcaAAAATCAAATCTCACTACGCATAAGCGGACTCATTCGGGTGAGAAGCCCTACAGCTGCAAATACTGTTTACAAAGTTTTAGTCGGAAATTCAGTCTCAAAGTGCACGAGCAGACTCATTCGGGTGAGAAGCCCTACAGCTGCAAACaatgttcaaaaagttttactcaAAAATCAAATCTCACTACGCATAAGCGGACTCATTCGGGTGAGAAGCCCTACAGCTGCAAATACTGTTTACAAAGTTTTAGTCGGAAATTCAGTCTCAAAGTGCACGAGCAGACTCATTCGGGTGAGAAGCCCTACAGCTGCAAACaatgttcaaaaagttttactcaAAAATCAAATCTTACTACGCATGAGCGGACTCATTCGGGTGAGAAGCCCTACAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCACTCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAGCTGTAAACACTGTTTACAAAGTTTTAGTCGGAAATTCAGTCTCAAAGTGCACGAGCAGACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGAGAAGCCCTACAGTTGTGAACACTGTTTGAAaagttatactaaaaaaaaatatcttaccaCGCACGAGCGGACTCATTCAGGTGATATGACCTACAGCTGCAAAcactgttcaaaaagtttttctgatAAATCTAATCTCACCGTGCACGAGCAGAGTTATAAAGGTAGTAGTTCATACGAATGCAAATTGTGTTTGACCAGTTTTGATCAAAAATTGGATTTAGCAAGGCACAAGCCGATCTACTACCGCAaagtgtgtttaaaaaaatccactaaTAAATCAAATCCTAAAATACACGAATGGACTTGCACTGGTGATCAATCCTTTGGCTCTAAACTATGTAGTTCAAAAGAATTTAGTCAGGCATTGTGTCATACATGGCACGAGCCGACTTACACGAATGATTCGCTGAGCgtaataaaaaaaaaacactgtttaCAAAGTTTTAGTCGGAAATTCAGTCTCAAAGTGCACGAGCAGACTCATTCGGGTGAGAAGCCCTACAGCTGCAAACaatgttcaaaaagttttactcaAAAATCAACTCTTACTACGCATGAGCGGNaaaaaaaaaaaaaaaaaaagaattga
Protein Sequence
MAENNDSGDTYGKDSRRNDDSTKHECIHTEENSYSCRVCHKVFTVRNHSSVHACISTVNKHHYKCKFCSTSFSQKFDLTWHEQTHAGDKPYSCKQCLKSFSRKFSLKVHEQTHSGEKPYSCKHCSQSFADKSNLTKHERTHTGDRPYNCKHCSKSFADKSNLTKHERTHTGEKPYSCEHCLKSYTKKKYLTTHERTHSGDMTYSCKYCLQSFSREFSLKVHEQTHSGEKPYSCKQCSKSFADKSTLTKHERTHTGDMPYSCKHCLQSFSRKFSLKVHEQTHSGEKPYSCKQCSKSFTQKSNLTTHKRTHSGEKPYSCKYCLQSFSRKFSLKVHEQTHSGEKPYSCKQCSKSFTQKSNLTTHKRTHSGEKPYSCKYCLQSFSRKFSLKVHEQTHSGEKPYSCKQCSKSFTQKSNLTTHERTHSGEKPYSCKHCSKSFADKSTLTKHERTHTGDRPYSCKHCLQSFSRKFSLKVHEQTHSSDKPFSCKHCSKSFADKSNLTKHERTHTGEKPYSCEHCLKSYTKKKYLTTHERTHSGDMTYSCKHCSKSFSDKSNLTVHEQSYKGSSSYECKLCLTSFDQKLDLARHKPIYYRKVCLKKSTNKSNPKIHEWTCTGDQSFGSKLCSSKEFSQALCHTWHEPTYTNDSLSVIKKKHCLQSFSRKFSLKVHEQTHSGEKPYSCKQCSKSFTQKSTLTTHERXKKKKKKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-