Cflr001760.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- -
- Assembly
- GCA_000648655.2
- Location
- NW:119347-122972[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0084 0.35 10.8 3.9 1 23 45 67 45 67 0.98 2 19 5.5e-07 2.3e-05 24.0 3.5 1 23 73 95 73 95 0.98 3 19 5.3e-08 2.2e-06 27.2 1.1 1 23 102 124 102 124 0.98 4 19 4.6e-06 0.00019 21.1 1.1 1 23 130 152 130 152 0.98 5 19 3.5e-07 1.4e-05 24.6 5.2 1 23 158 180 158 181 0.96 6 19 8.3e-08 3.5e-06 26.6 3.7 1 23 187 209 187 209 0.99 7 19 1.8e-06 7.7e-05 22.3 2.2 1 23 215 237 215 237 0.99 8 19 3e-06 0.00012 21.7 1.5 1 20 243 262 243 264 0.95 9 19 8e-07 3.4e-05 23.5 3.9 1 23 272 294 272 294 0.98 10 19 5.5e-07 2.3e-05 24.0 2.9 1 23 300 322 300 322 0.99 11 19 6.2e-06 0.00026 20.7 0.6 1 23 328 350 328 350 0.98 12 19 1.5e-08 6.4e-07 28.9 5.1 1 23 357 379 357 379 0.99 13 19 1.5e-07 6.1e-06 25.8 1.4 1 23 385 407 385 407 0.99 14 19 7.6e-08 3.2e-06 26.7 0.8 1 23 413 435 413 435 0.98 15 19 1.8e-09 7.7e-08 31.8 0.8 1 23 442 464 442 464 0.99 16 19 4.7e-06 0.0002 21.0 1.7 1 23 470 492 470 492 0.98 17 19 8.3e-07 3.5e-05 23.4 2.9 1 23 498 520 498 520 0.97 18 19 2.8e-09 1.2e-07 31.2 3.8 1 23 527 549 527 549 0.99 19 19 4.5e-06 0.00019 21.1 2.6 1 23 555 577 555 577 0.99
Sequence Information
- Coding Sequence
- ATGGATGATAATACAATGGAAGTCGATAAGCATCACAATAAGCGAATTTTTACGGGAAACTATGACAATGATACATCATTCAGTAAAACTCAACTGGACAATCACAAACGTACACGTGTGGATAGGCAACGTCATACTTGTAGTTATTGTATTAAGTCGTTTTTGAGCAAAAATGAATTAACAAAACATACCAGaatccataaaaatgaaaagccaTACAAATgtaaattctgtaaaaaatcttttactcaATCCTCTACTCTAAAAGCACATATTAGTCAGCATAATAGAAACAGTAGACGCTTCAATTGCAATGCCTGTGGCAAGTCATTTGCTCGAAAATACAGTCTTATAAAACACATTCGCACCCATACGGGTGAAAAGCCGTACAAATGTGAAGTTTGTGAAAAAGCTTTTACtgcaaaacataatttaataattcatactCGCTTACATACACACGAAAGGCCATACGAATGTAAAATTTGTGGGAAATCTTTTACTAAATCTTCTCATTTAAATGAGCATACAAAGCTCCATCATCCAAACAATAGGCGCTTTAAATGTAACGATTGTGGCAAGTCTTTTGCTTACAAACACAGTCTTACCATCCACACTCGCACCCATACGGGCGAAAAGCCATACAAATGTGAAGtttgtgaaaaaacttttactgcaaaacataatttaataagtcaTACTCGTATTCATACACACGAAAAGCCATACGAATGTGAATtctgtaaaaaatcttttagtcAATCCTCTACTCTAAAAGCACATATTAGTCATCAAAATAGAAACGATAGATGCTTTAATTGTACCGATTGTGGCAAGTCTTTTGCTCACAAACACAGACTTATAATCCACATTCGCACCCATACGGGCGAAAAGCCATACAAATGCGACGTTTGtgataaaacttttactttaaaacacaatttaataactcatactcgtatacatacacatgaaaAGCCTTACGAATGTAAAATTTGTGGGAAATATTTTGCTcaattatcttatttaaatgGGCATACAAAGCTCCATAATCAAACCAATAGGTGCTTTAAATGTAACGATTGTGGCAAGTCTTTTGCTCACAAACACAGTCTTATAAAACACATTCGCACTCATATGGGCGAAAAGCCATACAAATGTGACGTTTGtgataaaagttttactttaaaatataatttaataactcatactcgtatacatacacatgaaaAGCCTTACGAATGTAAAATTTGTGGGAAATCTTTTACTCAATTATCTAATTTAAATGGGCATACAAAGCTCCATAATCCAAACAATGTGTGCTTTAAATGTAACGATTGTGGCAAATCTTTTACTGAAAAAGGCAATCTTACCATCCACATTCGCACCCATACGGGCGAAAAGCCATACAAATgtgaaatttgtgaaaaaacatATAgcacaaaacaatatttatcaaTTCATACTCGATTACATACACACGAAAAACTAtatgaatgtaaaatttgtaagaaatctTTTTCTCAATTCTTTTCTCTGAAAAGGCATATGGAGCTCCATAATCCAAACAATAGGTGCTTTAAATGTAACGATTGTGGCAAGTCTTTTTCTCGGAAACACAGTCTTACAATCCACATTCGCACCCATACGGGCGAAAAGCCATACAAATGTACAGTTTGTGAAAAAACTTAttccaaaaaacaaaatttatcaattcatACTCGCTCGCATACAGACAAAAAGCCATAA
- Protein Sequence
- MDDNTMEVDKHHNKRIFTGNYDNDTSFSKTQLDNHKRTRVDRQRHTCSYCIKSFLSKNELTKHTRIHKNEKPYKCKFCKKSFTQSSTLKAHISQHNRNSRRFNCNACGKSFARKYSLIKHIRTHTGEKPYKCEVCEKAFTAKHNLIIHTRLHTHERPYECKICGKSFTKSSHLNEHTKLHHPNNRRFKCNDCGKSFAYKHSLTIHTRTHTGEKPYKCEVCEKTFTAKHNLISHTRIHTHEKPYECEFCKKSFSQSSTLKAHISHQNRNDRCFNCTDCGKSFAHKHRLIIHIRTHTGEKPYKCDVCDKTFTLKHNLITHTRIHTHEKPYECKICGKYFAQLSYLNGHTKLHNQTNRCFKCNDCGKSFAHKHSLIKHIRTHMGEKPYKCDVCDKSFTLKYNLITHTRIHTHEKPYECKICGKSFTQLSNLNGHTKLHNPNNVCFKCNDCGKSFTEKGNLTIHIRTHTGEKPYKCEICEKTYSTKQYLSIHTRLHTHEKLYECKICKKSFSQFFSLKRHMELHNPNNRCFKCNDCGKSFSRKHSLTIHIRTHTGEKPYKCTVCEKTYSKKQNLSIHTRSHTDKKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -