Cflr010509.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Copidosoma floridanum
Gene Symbol
-
Assembly
GCA_000648655.2
Location
NW:241810-260652[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 7.7e-08 3.2e-06 26.7 0.9 1 23 10 34 10 34 0.97
2 21 3.1e-07 1.3e-05 24.8 0.3 1 23 40 62 40 62 0.99
3 21 9.2e-06 0.00039 20.1 0.7 1 23 68 92 68 92 0.98
4 21 9.5e-07 4e-05 23.2 0.2 1 23 98 122 98 122 0.99
5 21 1.7e-05 0.00069 19.3 0.7 1 23 128 152 128 152 0.99
6 21 0.00015 0.0063 16.3 0.3 1 23 158 182 158 182 0.98
7 21 3.9e-07 1.6e-05 24.4 0.4 1 23 188 212 188 212 0.98
8 21 2.1e-05 0.00089 19.0 0.2 1 23 218 242 218 242 0.97
9 21 4.9e-06 0.0002 21.0 0.5 1 23 248 272 248 272 0.98
10 21 1.2e-05 0.00052 19.7 0.1 1 23 278 302 278 302 0.96
11 21 2.2e-07 9.4e-06 25.2 0.1 1 23 326 350 326 350 0.98
12 21 7.7e-08 3.2e-06 26.7 0.9 1 23 356 380 356 380 0.97
13 21 3.1e-07 1.3e-05 24.8 0.3 1 23 386 408 386 408 0.99
14 21 9.2e-06 0.00039 20.1 0.7 1 23 414 438 414 438 0.98
15 21 9.5e-07 4e-05 23.2 0.2 1 23 444 468 444 468 0.99
16 21 1.7e-05 0.00069 19.3 0.7 1 23 474 498 474 498 0.99
17 21 0.00015 0.0063 16.3 0.3 1 23 504 528 504 528 0.98
18 21 3.9e-07 1.6e-05 24.4 0.4 1 23 534 558 534 558 0.98
19 21 2.1e-05 0.00089 19.0 0.2 1 23 564 588 564 588 0.97
20 21 4.9e-06 0.0002 21.0 0.5 1 23 594 618 594 618 0.98
21 21 1.2e-05 0.00052 19.7 0.1 1 23 624 648 624 648 0.96

Sequence Information

Coding Sequence
ATGAACACGCACACCGGCGAGCGGCCCTTCGAGTGCAATGAAAATGGCTGCGGGAAAAAGTTCGCCGACAAAAGTAACCTCAAAAGGCACATGTACTCGCACTTTGCCCAATTTCGTTTCAAGTGCAACGAATGCGGCCAAGATTTTGCCCAAAAGGACAAACTTATTCTTCACATGCGTGTACACACCGGCGAGCGGCCCTACAAGTGCAAAGAACCCACGTGTGAAAAAGCTTTTGCTTCGTATAGTGCACTACACATTCACATGCGCGTACACACTGGCGAGCGGCCCTACAAGTGTCCCGAGCCCGGCTGCGAAAAAGCCTTCACTCAACAGAACAATCTCTCGATGCACGTGCGCACCCACACCGGTAAACGTCCCTACAAGTGCAAGGAACCCGGGTGTGGGCTAGCTTTCGCTGTCCGGTGCAATTTGAAAGctcacacacgcacgcacaccgGCGTGCGCCCTTACAGGTGCGACGAGCCCGGGTGTGCAAGGGCTTTTGGTCGCAAGCATGATCTGGTGAACCACGTGCGGACGCACACTGGCGAGCGGCCCTTCAAGTGCGATGAGCCCGGGTGTGGAAAAACATTTAGTCAAAAAACCAATCTGTCGATGCACGTGCGGGTCCACACGGGCGAGCGGCCCTACAAGTGCAGTGAGCCCGGGTGTGGGAAAACTTTTGCTCTACGGAGTACATTGAAGACACACGTTGGCACGCACACTGGCAAGCGACCCTACAAGTGCACCGAGCCGGGGTGTGGAAAATCTTTCGCTCAGCAAAACAAACTCTCGATTCACTCGCGCACGCATACTGGAAATCGGCCCTACAAGTGCGTCGAGCCCGGGTGTGGGAGAGCTTTTACCATTAAATCCAATCTGAAGAGTCACATTGGCACGCACATGGGCCTGCGACCCTACAAGTGTAATGTGCCCGGGTTACACGTGCGCGTGCACACTGGCGAGCGACCCTTTCAGTGCACTGAACCCGGATGTGGAAAAGCTTTTGCCCAACGAGGTAACCTCGCCACACACATGAACACGCACACCGGCGAGCGGCCCTTCGAGTGCAATGAAAATGGCTGCGGGAAAAAGTTCGCCGACAAAAGTAACCTCAAAAGGCACATGTACTCGCACTTTGCCCAATTTCGTTTCAAGTGCAACGAATGCGGCCAAGATTTTGCCCAAAAGGACAAACTTATTCTTCACATGCGTGTACACACCGGCGAGCGGCCCTACAAGTGCAAAGAACCCACGTGTGAAAAAGCTTTTGCTTCGTATAGTGCACTACACATTCACATGCGCGTACACACTGGCGAGCGGCCCTACAAGTGTCCCGAGCCCGGCTGCGAAAAAGCCTTCACTCAACAGAACAATCTCTCGATGCACGTGCGCACCCACACCGGTAAACGTCCCTACAAGTGCAAGGAACCCGGGTGTGGGCTAGCTTTCGCTGTCCGGTGCAATTTGAAAGctcacacacgcacgcacaccgGCGTGCGCCCTTACAGGTGCGACGAGCCCGGGTGTGCAAGGGCTTTTGGTCGCAAGCATGATCTGGTGAACCACGTGCGGACGCACACTGGCGAGCGGCCCTTCAAGTGCGATGAGCCCGGGTGTGGAAAAACATTTAGTCAAAAAACCAATCTGTCGATGCACGTGCGGGTCCACACGGGCGAGCGGCCCTACAAGTGCAGTGAGCCCGGGTGTGGGAAAACTTTTGCTCTACGGAGTACATTGAAGACACACGTTGGCACGCACACTGGCAAGCGACCCTACAAGTGCACCGAGCCGGGGTGTGGAAAATCTTTCGCTCAGCAAAACAAACTCTCGATTCACTCGCGCACGCATACTGGAAATCGGCCCTACAAGTGCGTCGAGCCCGGGTGTGGGAGAGCTTTTACCATTAAATCCAATCTGAAGAGTCACATTGGCACGCACATGGGCCTGCGACCCTACAAGTGTAATGTGCCCGGGTGTTCTTCCCACGCCACCCCCAACATTGAGGTCAAAAACATGTTACGACATTCACTCTCCCATCCAGTTTTTAAACCTGCCTACGCAAATTCCTACCTCTGCAGTCCTTTCCCCCACTCGGTGCTTTCGACATTGTCCCTCTCCATTGGACTTTGGGGACCAACATTACGACTGCCCAGTGATTTCCTTCCACTTTTCTCTCACCCATTGCACGTATAA
Protein Sequence
MNTHTGERPFECNENGCGKKFADKSNLKRHMYSHFAQFRFKCNECGQDFAQKDKLILHMRVHTGERPYKCKEPTCEKAFASYSALHIHMRVHTGERPYKCPEPGCEKAFTQQNNLSMHVRTHTGKRPYKCKEPGCGLAFAVRCNLKAHTRTHTGVRPYRCDEPGCARAFGRKHDLVNHVRTHTGERPFKCDEPGCGKTFSQKTNLSMHVRVHTGERPYKCSEPGCGKTFALRSTLKTHVGTHTGKRPYKCTEPGCGKSFAQQNKLSIHSRTHTGNRPYKCVEPGCGRAFTIKSNLKSHIGTHMGLRPYKCNVPGLHVRVHTGERPFQCTEPGCGKAFAQRGNLATHMNTHTGERPFECNENGCGKKFADKSNLKRHMYSHFAQFRFKCNECGQDFAQKDKLILHMRVHTGERPYKCKEPTCEKAFASYSALHIHMRVHTGERPYKCPEPGCEKAFTQQNNLSMHVRTHTGKRPYKCKEPGCGLAFAVRCNLKAHTRTHTGVRPYRCDEPGCARAFGRKHDLVNHVRTHTGERPFKCDEPGCGKTFSQKTNLSMHVRVHTGERPYKCSEPGCGKTFALRSTLKTHVGTHTGKRPYKCTEPGCGKSFAQQNKLSIHSRTHTGNRPYKCVEPGCGRAFTIKSNLKSHIGTHMGLRPYKCNVPGCSSHATPNIEVKNMLRHSLSHPVFKPAYANSYLCSPFPHSVLSTLSLSIGLWGPTLRLPSDFLPLFSHPLHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-