Cflr000827.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Copidosoma floridanum
Gene Symbol
-
Assembly
GCA_000648655.2
Location
NW:326035-333170[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.015 0.63 10.0 0.1 3 23 86 106 85 106 0.98
2 27 0.00012 0.005 16.6 1.9 1 23 112 134 112 134 0.98
3 27 4.8e-06 0.0002 21.0 0.5 1 23 140 163 140 163 0.98
4 27 6.7e-05 0.0028 17.4 0.6 1 23 169 191 169 191 0.95
5 27 1.1e-07 4.6e-06 26.2 3.0 1 23 197 219 197 219 0.99
6 27 1.7e-08 7.2e-07 28.7 2.5 1 23 225 247 225 247 0.99
7 27 1.7e-07 7.3e-06 25.5 0.7 1 23 253 275 253 275 0.98
8 27 6.1e-07 2.6e-05 23.8 2.1 1 23 281 303 281 303 0.99
9 27 6.8e-05 0.0028 17.4 0.5 1 23 309 331 309 331 0.93
10 27 1e-07 4.3e-06 26.3 3.3 1 23 337 359 337 359 0.99
11 27 2.6e-07 1.1e-05 25.0 1.9 3 23 367 387 365 387 0.97
12 27 6.9e-08 2.9e-06 26.8 1.0 1 23 393 415 393 415 0.99
13 27 3.4e-06 0.00014 21.5 0.3 1 23 421 443 421 443 0.99
14 27 3.6e-06 0.00015 21.4 3.9 3 23 451 471 450 471 0.98
15 27 0.00013 0.0056 16.5 0.8 3 23 601 621 600 621 0.98
16 27 4.3e-05 0.0018 18.0 2.6 1 23 627 649 627 649 0.98
17 27 1.6e-06 6.8e-05 22.5 1.0 1 23 655 677 655 677 0.99
18 27 1.4e-08 5.8e-07 29.0 2.5 1 23 683 705 683 705 0.99
19 27 4.1e-07 1.7e-05 24.4 0.3 3 23 713 733 712 733 0.98
20 27 3.2e-08 1.3e-06 27.9 1.6 1 23 739 761 739 761 0.99
21 27 2.4e-07 9.9e-06 25.1 1.2 1 23 767 789 767 789 0.99
22 27 3.5e-06 0.00015 21.4 0.1 3 23 797 817 796 817 0.97
23 27 0.00022 0.0092 15.8 1.3 1 23 823 845 823 845 0.93
24 27 3.7e-08 1.5e-06 27.7 1.2 1 23 851 873 851 873 0.99
25 27 1.3e-05 0.00056 19.6 1.2 3 23 881 901 880 901 0.98
26 27 6e-08 2.5e-06 27.0 0.4 1 23 907 929 907 929 0.99
27 27 2.7e-09 1.1e-07 31.2 1.2 1 23 935 957 935 957 0.99

Sequence Information

Coding Sequence
ATGGCGTCGAATCACGGCTGCAACGAAGAGATTCGAGATTCGAGACAAAAAAGCAACGTATCCAGTTCCTTAACAATAAACGACAGTTACTGGAGTAAAAGAACTGGGGACAACGAAGCTACCAATAAGATTATAGAAACTTTCTCTTCGTGTTTGTCACACATCGAAGTCCAACTATTTATCAACTGTTCAGGGGCCATTATTAACGAAAATCCAACCATGAGATCGGCACTGAAAAAAACCTGTACGAGACTTTGCGAGATCTGCGGTAAATTATCTGCTAATCTTACAGATTTTAAAGAGCACCAACTCGTTCACACGGGCGAGAGACCGTTTGAGTGCTCAATTTGTTTACAAACGTTTAATCGAAAAATGACCCTTGTAAGACACAAACAAACTCATATGGGGAAAAAACCCTTCAAATGCGCAGATTGTTCTAAAACATTTGGGCAAAAAGATACTATCATACGACACATACGGACTGTTCACAACGAGGAGAAACCCTTTGAGTGCATAGtatgtcaaaaaagttttaaatcttcaGTTAACCTCTCAACGCACATGGGAACCCACACGAGCAAAAAACCCTTCAAGTGCACAGAATGTCTTAGATCATTTCGCCAAAAAGGTAATCTTAGGAGGCACATGCAGACCCACACAGAGGAAAAACCCTATAAGTGCACAGATTGTCCAAAATATTTCAGCCAAAAAAGCAATCTCAGGAGACACATCCAAAGCCACACAGGGGAAAAACCTTTTGAGTGCCCAACATGTCAAAAAGGTTTTGCATTatcttctaacctcaaaaaacacaTGATGACTCACACGGGCGAGAAACCCTTCGAGTGCTCAACTTGTTCTAAAACATTTAACCGAAAAACTAATCTCGTTTTACACATACGGACGCACACAGGGGAAAAACCCTACAAGTGCTCGGTATGCCAAAAAGGTTTCATATCTCGTAGTAATATCGCAAAGCACATGTGGACCCACAAAGAGGAAAAACCCTATAAGTGCGCAAATTGTCCAAAATCTTTCAGCCAAAAAAACCACCTCACAACTCATATGCGCGTCCACACTGGCATACCTTTTAGTCACTGCACCATCTGTCAAAAGCCATTTACGTACTCGAGTAATCTTATAGTACACATGAGGACCCACACAGGGGAGCGACCCTACAAGTGCTCGGTGTGTCAAAAAGGTTTTAGATCTTCTAGTTCACTCGCAGATCACATGCGGACCCATACCGGGGAAAAACCCTATAAGTGTGCAAATTGTCCAAACTCTTTTGCGCAAAAAGGTACTCTTAAAATTCACATGCGCATCCACACAGGCATACCTTACGGTTTTTGTACCATCTGCAAAAAGCCATTTAGGCACGCGAATAGTCTTAAAAATCATATGAGGACCCATACGAGGAAAAAACCTTCGAGAgaatccagtaaaaaaaaacaaaaacagatgATGTCCCACGAGATTAATGGCTATGTAGCACGTGTTAGTAATACTAAGTACGCTCTATCTATGTCTATTTCTCTCACGCACTTTACTGACACGTGCCATGTAGCTTATGCGTACAAGCCACAAAGACAAAAAAGCAACGCGTTCAGTTCCTCAACAATAAATGACAGTTACTGGAGTAAAAGAACTGGGGACAACAAAGCTACCACTAAGATTATAGAAACTTTCTCTTCGTGTTTACCACACATCGAAGTCCAATTATTTATCAACTGTACAGGGGCCATTATTAACGGAAATCCAATCATGACATCAGCACTGAAAAACACTTGTACGAGACTTTGCGAGGTCTGTGGTAAAACGTTTGCCAAAATTGCACATTTTAAATCGCACCAACTTGTTCACACGGGCGAGAAACCCTTCGAGTGTTCAATTTGTTCTAAAACGTTTAGTCGAAAAACTGATCTCGTATGTCACATACGGATTCATACAGAAGAGCGTCCTTATAGGTGCTCGGTATGTCGAATAGGTTTTACATTTTCCGGTAACCTCAAAAAACACATGAGGAtccatgcagaaaaaaaatcgtttaagtGCAAAGATTGTCCAAAATCTTTTAGTCTAAAAACCAATCTCAGGAGGCACATGCGCGTCCACACTGGCATACCTTATGGTAATTGTACTATATGCCAAAGGCCATTCACTGACCCGAGCAGTCTTAGAGTGCATATGAGGATCCATACAGGAGAGAAACCTTACACGTGCTCCGTATGTCAAAAAGGTTTTAGATCTTCCAGTGACCTCACACAGCACATGCGGACTCACACAGGGGAGAAACCCTATAAGTGTGCAGATTGTTCAGAATCTTTTAGTCTAAAAACCAATCTCAGGAGGCACATGCGCATCCACACTGGCATACCTTATGGGCCCTGTTTAATCTGCCAACAACCATTCATTGACCCGAGTAGTCTTAAAGTGCACATGAGGACCCATACAGGCGAACGACCCTACAAGTGCTCGGTATGCCAAAAAGGTTTCATATCTCATAGTAATATCGCAAAGCACATGTGGACCCACAAAGAGGAAAAACCCTATAAATGCACAGATTGTCCAGAATCTTTCAGCCAGAAAAAACTTCTAACAACTCATATGCGTGTCCACACCGGCATACCTTGCGGGCATTGTCCCATTTGCCAAAGGCCATTCATGGACATGGGTAATCTTAAAAGGCACATAAAGACCCATACGGGAGAAAGGCCCTATAAATGTCCAGTTTGTCCAAAATCTTTTGGACTAAAAAGCAATCTCAAGAGACACGTGCGTGTCCATACCGGTATACCTTCTTATCGCTGTTCCATCTGCCAAAGGCCATTCACCGACGCGAGTAATCTTAAAAGGCATATGAGGACCCACACGAGCGAGGGTTCTTCGAGTTCTTAG
Protein Sequence
MASNHGCNEEIRDSRQKSNVSSSLTINDSYWSKRTGDNEATNKIIETFSSCLSHIEVQLFINCSGAIINENPTMRSALKKTCTRLCEICGKLSANLTDFKEHQLVHTGERPFECSICLQTFNRKMTLVRHKQTHMGKKPFKCADCSKTFGQKDTIIRHIRTVHNEEKPFECIVCQKSFKSSVNLSTHMGTHTSKKPFKCTECLRSFRQKGNLRRHMQTHTEEKPYKCTDCPKYFSQKSNLRRHIQSHTGEKPFECPTCQKGFALSSNLKKHMMTHTGEKPFECSTCSKTFNRKTNLVLHIRTHTGEKPYKCSVCQKGFISRSNIAKHMWTHKEEKPYKCANCPKSFSQKNHLTTHMRVHTGIPFSHCTICQKPFTYSSNLIVHMRTHTGERPYKCSVCQKGFRSSSSLADHMRTHTGEKPYKCANCPNSFAQKGTLKIHMRIHTGIPYGFCTICKKPFRHANSLKNHMRTHTRKKPSRESSKKKQKQMMSHEINGYVARVSNTKYALSMSISLTHFTDTCHVAYAYKPQRQKSNAFSSSTINDSYWSKRTGDNKATTKIIETFSSCLPHIEVQLFINCTGAIINGNPIMTSALKNTCTRLCEVCGKTFAKIAHFKSHQLVHTGEKPFECSICSKTFSRKTDLVCHIRIHTEERPYRCSVCRIGFTFSGNLKKHMRIHAEKKSFKCKDCPKSFSLKTNLRRHMRVHTGIPYGNCTICQRPFTDPSSLRVHMRIHTGEKPYTCSVCQKGFRSSSDLTQHMRTHTGEKPYKCADCSESFSLKTNLRRHMRIHTGIPYGPCLICQQPFIDPSSLKVHMRTHTGERPYKCSVCQKGFISHSNIAKHMWTHKEEKPYKCTDCPESFSQKKLLTTHMRVHTGIPCGHCPICQRPFMDMGNLKRHIKTHTGERPYKCPVCPKSFGLKSNLKRHVRVHTGIPSYRCSICQRPFTDASNLKRHMRTHTSEGSSSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00369250;
90% Identity
iTF_00369250;
80% Identity
iTF_00369250;