Cflr005646.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Copidosoma floridanum
Gene Symbol
-
Assembly
GCA_000648655.2
Location
NW:119361-146848[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 34 1.5e-06 6.1e-05 22.6 3.2 1 23 10 32 10 32 0.99
2 34 5.5e-07 2.3e-05 24.0 0.6 1 23 38 60 38 60 0.99
3 34 4.8e-06 0.0002 21.0 7.5 1 23 66 88 66 88 0.99
4 34 6.7e-08 2.8e-06 26.8 0.5 1 23 94 116 94 116 0.99
5 34 2e-07 8.6e-06 25.3 1.8 1 23 122 144 122 144 0.99
6 34 3.1e-05 0.0013 18.4 7.3 1 23 150 172 150 172 0.99
7 34 4.9e-06 0.00021 21.0 1.6 1 23 178 200 178 200 0.99
8 34 0.0025 0.1 12.5 0.0 7 23 222 238 222 238 0.93
9 34 1.2e-06 5e-05 22.9 4.2 1 23 244 266 244 266 0.98
10 34 7.2e-08 3e-06 26.8 0.6 1 23 272 294 272 294 0.99
11 34 1.2e-06 5e-05 22.9 4.2 1 23 300 322 300 322 0.98
12 34 7.2e-08 3e-06 26.8 0.6 1 23 328 350 328 350 0.99
13 34 1.2e-06 5e-05 22.9 4.2 1 23 356 378 356 378 0.98
14 34 7.2e-08 3e-06 26.8 0.6 1 23 384 406 384 406 0.99
15 34 6.6e-05 0.0028 17.4 6.8 1 23 412 434 412 434 0.98
16 34 4.9e-08 2.1e-06 27.3 0.4 1 23 440 462 440 462 0.99
17 34 2e-06 8.3e-05 22.2 5.1 1 23 468 490 468 490 0.99
18 34 1.5e-06 6.2e-05 22.6 3.5 1 23 496 518 496 518 0.98
19 34 2.2e-07 9e-06 25.3 2.6 1 23 524 546 524 546 0.99
20 34 3.4e-06 0.00014 21.5 2.4 1 23 552 574 552 574 0.99
21 34 1.5e-07 6.2e-06 25.8 1.4 1 23 580 602 580 602 0.99
22 34 1.2e-06 5e-05 22.9 1.6 1 23 648 670 648 670 0.97
23 34 4.9e-07 2.1e-05 24.1 1.1 1 23 676 698 676 698 0.99
24 34 1.9e-07 8.1e-06 25.4 1.2 1 23 704 726 704 726 0.99
25 34 0.00016 0.0068 16.2 1.7 1 23 732 754 732 754 0.97
26 34 1.9e-07 8.1e-06 25.4 1.2 1 23 760 782 760 782 0.99
27 34 1.2e-08 4.9e-07 29.2 1.8 1 23 788 810 788 810 0.99
28 34 6.8e-05 0.0028 17.4 0.5 1 23 816 838 816 838 0.99
29 34 0.00035 0.015 15.2 2.8 3 23 864 884 862 884 0.98
30 34 5.3e-07 2.2e-05 24.0 0.4 1 23 913 936 913 936 0.95
31 34 0.0045 0.19 11.7 2.9 1 23 938 961 938 961 0.93
32 34 0.00015 0.0063 16.3 0.2 1 23 963 986 963 986 0.95
33 34 0.2 8.5 6.5 3.0 1 23 988 1011 988 1011 0.92
34 34 7.8 3.3e+02 1.5 5.2 1 17 1013 1029 1013 1036 0.85

Sequence Information

Coding Sequence
ATGCGGATCCATTTTGGTGAGAAACCATATCAGTGTGATTTGTGTCCCCAAAAGTTCAGTCAGAACTGCAGCCTTCAAAAAcacatgcgaatccattctggtgagAAACCATACCAGTGCTCGGTTTGTTCACGAGCTTTCACTACAAATGATGATATCACaaggcacatgcgaatccattcGGGTGAGAAACCATATCAGTGCCATTTGTGTTCCAAAAAGTTCAGTCAGAACTGCAGCCTTCAAAAACACATGCGGATCCATTCTGGTGAGAAACCATATCAGTGCTCGATTtgttcacgagcttttactacaaatggtGATCTCTCAAGGCATATgcgaatccattctggtgaaaaacCATATCAGTGCGATTTGTGTCCCCAAAAGTTCAGCCAAAAAGGCCATCTTAAAATTCACATGCGGATCCATTCTGGTGAGAAACCATTCCAGTGTGATTTGTGTTCACGAAAATTCAGTCACAACTGCAGCCTTAAAAAACACATGCGGATCCATTCTGGTGAGAAACCATACCAGTGCGATTTGTGTTCACAAGCTTTTTATCAAAATAGTGATCTCACGAGGCACAAGCAAACTCACAGGGACGAAAGGCTCTTCAATGGCACTACGTGTCAATTGATTCACACGAAAACTAAGTCCTTTGGGTGTGCATTCAGCCAAAAAGGCAATCTTAAAATTCACATGCggatccattctggtgaaaaacCACATCAGTGCGATTTGTGTCCCCAAAAGTTTAACCATAACAGTAACCTTCAAAATCACATGCGGATCCATTCTGGTGAGAAACCATATCAGTGTGATTTGTGTCCCCAAAAGTTCAGCCAAAAAGGCAATCTTAAAATTCACATGCggatccattctggtgaaaaacCACATCAGTGCGATTTGTGTCCCCAAAAGTTTAACCATAACAGTAACCTTCAAAATCACATGCGGATCCATTCTGGTGAGAAACCATATCAGTGTGATTTGTGTCCCCAAAAGTTCAGCCAAAAAGGCAATCTTAAAATTCACATGCggatccattctggtgaaaaacCACATCAGTGCGATTTGTGTCCCCAAAAGTTTAACCATAACAGTAACCTTCAAAATCACATGCGGATCCATTCTGGTGAGAAACCATATCAGTGTGATTTGTGTCCCCAAAAGTTCAGCCAAAAAGGCAATCTTAAAATTCACATGCggatccattctggtgaaaaacCACATCAGTGCGATTTGTGTCCCCAAAAGTTTAACCATAACTGTAACCTTCAAAATCACATGCGGATCCATTCTGGTGAGAAACCATTTCAGTGCTCGATTtgttcacgagcttttactacaaatgatGAACTCGCaaggcacatgcgaatccattctggtgagAAACCATATCAGTGCGATTTGTGTTCCAAAAAGTTCAGTCAGAACTGCAGCCTTAAAAAACACATGCGGATCCATTCTGGTGAGAAACCACATCAGTGCGATTTGTGTCCCCAAAAGTTCAGCCAAAAAGGCCATCTTAAAATTCACATGCGCATCCATTCCGGTGAAAAACCATATCAGTGTGATTTGTGTCCCCAAAAGTTTAACCAAAAAAGCCATCTTAAAATTCACATGCGGATCCATTCTAGAGAGAAACCATATCAGTGCGATTTGTGTCTCCAAAAGTTCAGCCAAAAAGGCCATCTTAAAATTCACATGCGCATCCATTCCGGTGAAAAACCATATCAGTGTGATTTGTGTCCCGAAAAGTTCAGCCAAAAAGGCCATCTTAAAATTCACATGCGGATCCATTCTGCATTGCTATTACTACAACAAAAATACACGATACCAACGACCACTACAAAAGAATCCGTAGCTGCAACTTTCGAGATACATCGAtcacaacaaaataatatggCCGAAAAACCGAGTTCCTCGAGGGAATGCCATTCTTGTGATGTATGCCAAAAGTCTTTCCGCAATTCCAGTCTACTGGCATCACATTTgcgaatccattctggtgagAAACCATACCAGTGTGATTTGTGTTCACGAAAGTTCAGCGAGAAAGGCAACCTTCAAAAACACATTCGAATCCATTCAGGTGAGAAACCATACCAGTGCGAATGGTGTCCCCAAAAGTTCAGCCAAAACGGCCATCTTAAAATTCACatgcgGATCCATTCTGGTGAGAAACCATACCAGTGCTCGGTCTGTTTAcgactttttactaaaaatagttATCTCATAAGGCACATGCTTTTTCATTCAGGTGAGAAACCATACCAGTGCGAATGGTGTCCCCAAAAGTTCAGCCAAAACGGCCATCTTAAAATTCACATGCGGATCCATTCTGGTGAGAAACCATACCAGTGCTCGGATTGTTCACGagtttttactacaaatagttatctcacaaggcacatgcgGATCCATTCTGGTGAGAAACCATACCAGTGCGATTTGTGTTCACAAAAGTTCAGCGAGAAAGGCAACATTAAAATTCACATGCAGATCCATTCTGGTGAGAAACCATATCAGTGTGATTTGCCTGCAGGTCACCAATTGATTCACACGAAAACTAAGTTCTTTGGGTGTACAGTTTGTCATGAATCTTTTCAACTGAGATACCAACttaaaaatcatatgaaaatGCATACGAAAGCGAGCACCAATTGCTCACCATCTAATACCAACCAAAACGAAGTTCTTATGCAGCACATAAATGTCCAGCATAACATATTTCGCTGCGACGAGTGTCCGCAATCATTTACCCGCAAAAGCAGCCTCATAAAACACATTGGGTCTGAGCACAACCATCGCTGCATTCAATGCCCACAAACTTTTGTCCGAAGCAGTTGTCTTGAGAATCATGTGCGCAATTGGCATTTGTTTCCATGTGGCGAGTGTCAGAAAATATTCACTGATTCAAATAGTCTCGTGAGTCACGAACGTGATAATCATTTCCACCGTTGCATGGCATGTACGCGATCTTTTCATCGCATCAGTGACTACAACAAACACGTAGCTAATTGGCACCCGTTTAGTTGTGATATATGCAAACGTTATTTCAACATGTTATCCGATCTCTTGTGTCACAAATACGATTGTCACGATCTTTAG
Protein Sequence
MRIHFGEKPYQCDLCPQKFSQNCSLQKHMRIHSGEKPYQCSVCSRAFTTNDDITRHMRIHSGEKPYQCHLCSKKFSQNCSLQKHMRIHSGEKPYQCSICSRAFTTNGDLSRHMRIHSGEKPYQCDLCPQKFSQKGHLKIHMRIHSGEKPFQCDLCSRKFSHNCSLKKHMRIHSGEKPYQCDLCSQAFYQNSDLTRHKQTHRDERLFNGTTCQLIHTKTKSFGCAFSQKGNLKIHMRIHSGEKPHQCDLCPQKFNHNSNLQNHMRIHSGEKPYQCDLCPQKFSQKGNLKIHMRIHSGEKPHQCDLCPQKFNHNSNLQNHMRIHSGEKPYQCDLCPQKFSQKGNLKIHMRIHSGEKPHQCDLCPQKFNHNSNLQNHMRIHSGEKPYQCDLCPQKFSQKGNLKIHMRIHSGEKPHQCDLCPQKFNHNCNLQNHMRIHSGEKPFQCSICSRAFTTNDELARHMRIHSGEKPYQCDLCSKKFSQNCSLKKHMRIHSGEKPHQCDLCPQKFSQKGHLKIHMRIHSGEKPYQCDLCPQKFNQKSHLKIHMRIHSREKPYQCDLCLQKFSQKGHLKIHMRIHSGEKPYQCDLCPEKFSQKGHLKIHMRIHSALLLLQQKYTIPTTTTKESVAATFEIHRSQQNNMAEKPSSSRECHSCDVCQKSFRNSSLLASHLRIHSGEKPYQCDLCSRKFSEKGNLQKHIRIHSGEKPYQCEWCPQKFSQNGHLKIHMRIHSGEKPYQCSVCLRLFTKNSYLIRHMLFHSGEKPYQCEWCPQKFSQNGHLKIHMRIHSGEKPYQCSDCSRVFTTNSYLTRHMRIHSGEKPYQCDLCSQKFSEKGNIKIHMQIHSGEKPYQCDLPAGHQLIHTKTKFFGCTVCHESFQLRYQLKNHMKMHTKASTNCSPSNTNQNEVLMQHINVQHNIFRCDECPQSFTRKSSLIKHIGSEHNHRCIQCPQTFVRSSCLENHVRNWHLFPCGECQKIFTDSNSLVSHERDNHFHRCMACTRSFHRISDYNKHVANWHPFSCDICKRYFNMLSDLLCHKYDCHDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-