Cflr010023.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Copidosoma floridanum
Gene Symbol
-
Assembly
GCA_000648655.2
Location
NW:2246892-2250650[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 42 0.0055 0.23 11.4 0.5 1 21 36 56 36 57 0.93
2 42 5.3e-05 0.0022 17.7 4.3 1 23 64 86 64 86 0.98
3 42 6.4e-06 0.00027 20.6 3.5 1 23 92 114 92 114 0.98
4 42 3.6e-07 1.5e-05 24.5 2.3 1 23 120 142 120 142 0.98
5 42 4.8e-07 2e-05 24.2 5.3 1 23 148 170 148 170 0.99
6 42 7.2e-07 3e-05 23.6 4.5 1 23 176 198 176 198 0.98
7 42 4.8e-07 2e-05 24.2 5.3 1 23 204 226 204 226 0.99
8 42 7.2e-07 3e-05 23.6 4.5 1 23 232 254 232 254 0.98
9 42 4.8e-07 2e-05 24.2 5.3 1 23 260 282 260 282 0.99
10 42 7.2e-07 3e-05 23.6 4.5 1 23 288 310 288 310 0.98
11 42 4.8e-07 2e-05 24.2 5.3 1 23 316 338 316 338 0.99
12 42 2.8e-07 1.2e-05 24.9 4.8 1 23 344 366 344 366 0.98
13 42 3.8e-06 0.00016 21.3 3.8 1 23 372 394 372 394 0.99
14 42 1.9e-05 0.00078 19.2 3.7 1 23 400 422 400 422 0.98
15 42 2.4e-05 0.00099 18.8 6.6 1 23 428 450 428 450 0.98
16 42 2.8e-07 1.2e-05 24.9 4.8 1 23 456 478 456 478 0.98
17 42 6.5e-06 0.00027 20.6 6.8 1 23 484 506 484 506 0.99
18 42 2.8e-07 1.2e-05 24.9 4.8 1 23 512 534 512 534 0.98
19 42 6.5e-06 0.00027 20.6 6.8 1 23 540 562 540 562 0.99
20 42 2.8e-07 1.2e-05 24.9 4.8 1 23 568 590 568 590 0.98
21 42 6.5e-06 0.00027 20.6 6.8 1 23 596 618 596 618 0.99
22 42 2.8e-07 1.2e-05 24.9 4.8 1 23 624 646 624 646 0.98
23 42 6.5e-06 0.00027 20.6 6.8 1 23 652 674 652 674 0.99
24 42 2.8e-07 1.2e-05 24.9 4.8 1 23 680 702 680 702 0.98
25 42 6.5e-06 0.00027 20.6 6.8 1 23 708 730 708 730 0.99
26 42 2.8e-07 1.2e-05 24.9 4.8 1 23 736 758 736 758 0.98
27 42 6.5e-06 0.00027 20.6 6.8 1 23 764 786 764 786 0.99
28 42 2.8e-07 1.2e-05 24.9 4.8 1 23 792 814 792 814 0.98
29 42 6.5e-06 0.00027 20.6 6.8 1 23 820 842 820 842 0.99
30 42 2.8e-07 1.2e-05 24.9 4.8 1 23 848 870 848 870 0.98
31 42 6.5e-06 0.00027 20.6 6.8 1 23 876 898 876 898 0.99
32 42 2.8e-07 1.2e-05 24.9 4.8 1 23 904 926 904 926 0.98
33 42 6.5e-06 0.00027 20.6 6.8 1 23 932 954 932 954 0.99
34 42 2.8e-07 1.2e-05 24.9 4.8 1 23 960 982 960 982 0.98
35 42 6.5e-06 0.00027 20.6 6.8 1 23 988 1010 988 1010 0.99
36 42 2.8e-07 1.2e-05 24.9 4.8 1 23 1016 1038 1016 1038 0.98
37 42 6.5e-06 0.00027 20.6 6.8 1 23 1044 1066 1044 1066 0.99
38 42 7.2e-07 3e-05 23.6 4.5 1 23 1072 1094 1072 1094 0.98
39 42 1.3e-05 0.00054 19.7 3.6 1 23 1100 1122 1100 1122 0.99
40 42 2.5e-06 0.0001 21.9 5.5 1 23 1128 1150 1128 1150 0.96
41 42 0.13 5.3 7.1 1.2 7 23 1162 1178 1156 1178 0.85
42 42 0.14 5.8 7.0 1.2 1 16 1184 1199 1184 1201 0.93

Sequence Information

Coding Sequence
ATGGCCGAAAGTAGCACTTATAATTTTGGTGAAGTATGCAGTAAAACTTGCCAAACTAATGATGCTCTCAAGAAGAATGAACGTATCCATACAGAAGATAAGTCCTATATTTGCAAAGTATGTAACAAAGATTTTATCACTGAAAACTACTTAGTAGTGCACAAATGTATTTATACAGGTGATAAGCCCTACAGCTGTAAACACTGTTCAGAAAGTTTTAATCGGCAATTCAGTCTCAAAGTGCACGAGCAGACTCATTCGGGTGAAAAGCCCTACAGCTGTAAATactgttcaaaaagttttaatcggCAATTCAGTCTCAAAGTGCACGAGCAGACTCATTCGGGTGAGAAGCCCTACAGCTGCAAACaatgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCAAACTCATTCGGGTGAGAAGCCCTACAGCTGTAAATactgttcaaaaagttttgttcagAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCAAACTCATTCGGGTGAGAAGCCCTACAGCTGTAAATactgttcaaaaagttttgttcagAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCAAACTCATTCGGGTGAGAAGCCCTACAGCTGTAAATactgttcaaaaagttttgttcagAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCAAACTCATTCGGGTGAGAAGCCCTACAGCTGTAAATactgttcaaaaagttttgttcagAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAGTTGCAAACACTGTTCACAAAGTTTTGTTCAGAAATGGAATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAGcaatgtttaaaaagttttagtcGAAAATTCAGTCTCAAAGTGCACGAGCGGACTCATTCGGGTGAGAAGCCCTACAGCTGCAAACACTGTTCACAAAGTTTTGTTCAGAAATCGCATCTCATGCGGCACGAGCGAAATCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAGTTGCAAACACTGTTCACAAAGTTTTGTTCAGAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAGTTGCAAACACTGTTCACAAAGTTTTGTTCAGAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAGTTGCAAACACTGTTCACAAAGTTTTGTTCAGAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAGTTGCAAACACTGTTCACAAAGTTTTGTTCAGAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAGTTGCAAACACTGTTCACAAAGTTTTGTTCAGAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAGTTGCAAACACTGTTCACAAAGTTTTGTTCAGAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAGTTGCAAACACTGTTCACAAAGTTTTGTTCAGAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAGTTGCAAACACTGTTCACAAAGTTTTGTTCAGAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAGTTGCAAACACTGTTCACAAAGTTTTGTTCAGAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAGTTGCAAACACTGTTCACAAAGTTTTGTTCAGAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCGGACTCATACAGGTGATAGGCCCTACAGTTGCAAACACTGTTCACAAAGTTTTGTTCAGAAATCGCATCTTATGCGGCACGAGCGAACTCACTCTAGTGATAAGCCCTTCAGCTGCAAAcactgttcaaaaagttttgctgaTAAATCCAATCTCACAAAACACGAGCAAACTCATTCGGGTGATAAACCCTACAGCTGCAAGcaatgtttaaaaagttttagtcGGAAATTCAGTCTCAAAGTGCACGAGCGGACTCATACAGGTGATAGGCCCTACAGTTGCAAACACTGTCcaaaaagttttactaaaaaatctaATCTTACGAGGCACGAGCAGTTTCATTCGGGTGATAGGCCCTACAGCTGCAAATACCGTTCGAAAAGTTTTAACCAGCAATTCAGTCTCAAAGTGCACGAACAGACTCATTTGTGTGATAAGCCCTACAGCTGCGAACACTGTTTGACACGTTTTACTcaagaatcaaatttttctacGCTCGAGTGGACTTACACAGGTGGAAAGTCTCATGACTtgaaacagtatttaaaaaacaaatcatcgCTTATAAGGCAAAGTCACACGGAAAATTCACCAGGTATAAGTTTAGTGTTGCCTTCATTTTCCAGTACTTTTCAAAGTAAATTCTTTTAG
Protein Sequence
MAESSTYNFGEVCSKTCQTNDALKKNERIHTEDKSYICKVCNKDFITENYLVVHKCIYTGDKPYSCKHCSESFNRQFSLKVHEQTHSGEKPYSCKYCSKSFNRQFSLKVHEQTHSGEKPYSCKQCSKSFADKSNLTKHEQTHSGEKPYSCKYCSKSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHEQTHSGEKPYSCKYCSKSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHEQTHSGEKPYSCKYCSKSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHEQTHSGEKPYSCKYCSKSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHERTHTGDRPYSCKHCSQSFVQKWNLMRHERTHSSDKPFSCKQCLKSFSRKFSLKVHERTHSGEKPYSCKHCSQSFVQKSHLMRHERNHSSDKPFSCKHCSKSFADKSNLTKHERTHTGDRPYSCKHCSQSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHERTHTGDRPYSCKHCSQSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHERTHTGDRPYSCKHCSQSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHERTHTGDRPYSCKHCSQSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHERTHTGDRPYSCKHCSQSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHERTHTGDRPYSCKHCSQSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHERTHTGDRPYSCKHCSQSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHERTHTGDRPYSCKHCSQSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHERTHTGDRPYSCKHCSQSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHERTHTGDRPYSCKHCSQSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHERTHTGDRPYSCKHCSQSFVQKSHLMRHERTHSSDKPFSCKHCSKSFADKSNLTKHEQTHSGDKPYSCKQCLKSFSRKFSLKVHERTHTGDRPYSCKHCPKSFTKKSNLTRHEQFHSGDRPYSCKYRSKSFNQQFSLKVHEQTHLCDKPYSCEHCLTRFTQESNFSTLEWTYTGGKSHDLKQYLKNKSSLIRQSHTENSPGISLVLPSFSSTFQSKFF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-