Cflr006482.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- -
- Assembly
- GCA_000648655.2
- Location
- NW:1329056-1331748[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-09 1.6e-06 27.1 0.0 1 37 15 50 15 55 0.90 2 2 0.32 3.6e+02 0.3 0.0 13 27 550 564 550 568 0.92
Sequence Information
- Coding Sequence
- atggtTCGTACCTACATACctaaaggaaacaaaaataaatggacTGAGGAGCAGATGCAATTGGCTATTGAAAGTGTAAATAGTGGAAAAGCCATTGCaagtactgcaaaaaaatttggcatACCAAGGAGTACTTTGCAAAGAAAGATTCAATGTATCAATTCACCAGATTATGAGGAAAAGGTTCCAGGTTTTCGCAAAGCATTTTCAGACGAAGAAGAAGATTTACTTGCAAAATACTTGAAAGCACTGGAAGACAAACTATTTGTGTTCACACGCACAGACGTTAGAAGACTGGCGTTTCAATTTGCAGAAAGATACCAGCCTAATCACCGATTTAACAAGAAAGAAGGATTAGCTGGACAAGATTGGATGACCAATTTTATCAAACGGCATCCACAGCTATCCATCAAAAAAGCAGAACGAATATCAGGATCAGATCCCTTGGAGTTAAACGAAGAAGCtgtattagaatttttttctgttctcaATTCTGTGATGAAACAATATGAGTTTCCAGCCTCTAGAATCTACAATGCAGATGAAatgagtattattattgtaccGGATGAAATGCCAAAAATTACCCCAGCTACGAAAAACAAACGACTTACTGATGTTATCCCTCCAGATGAGGCAGGTGATACTGTAACTATCAAGGTATGCTTTTCAGCAAGCGGCGAGTACATGCCGATGATGATTGTGTTTCCTAGAATGACGATTGATGACACATATTTGCAAGGCACTCCTGAAGGTACATGGGCAGAATGTCATCCTAATGGTTGCATTCAGAGCGAAATTTTTTATCGTTGGCTGATGAAATTCATCGAGTTTTCTGGCTCAACCAAAGAAAATCCTGTTTTACTTATACTCAATGCACATGTCGGTTACATAAAATGCTTTGATGTAACAGATCTAGCTGAAGAAAATGGTGTTATTATAGTTTGTGTCTCTGCATTTATAAAGCATGAAATACAACCCATTGATATGTCTTTTAGTAAatcttttagtaataattacatCGCTGAAGTGAGACAGTGGCTACAACTGAATAGCCCCAAGACTGTGACGATCGATCGAATAGCAGAGTTGTTAGGAAATGCTTTTACGAAAACTGCCACATTGGAAGATGCTGTGAATGGATTTTCTAAATCAGGAATTTATCCGTTTAATACGGAAATCCATCCTTTCAATTCACATTTCATGGCAGAGGAGTTGGATTCAACCACAAGTGAAGTACTGGGTGAAGTACAAAACAATGAACAAGAATTAACATGCAGTGCTTCAAAAGAATTTATAgtgaacataaaaaaagaaatgtcttTGAATGAGAACTCAGAAACTAATAGAAATCCTTCAGAAAAGtctcaaaaaagaaataattctGTACAAAGGAAAAATATCCCACAATCCAGTGCTGAGCCTATTCGGCCTAAAAGATCTATAACAAAAGTACAGAAAGAATTCCCCCAACAAAATCAGCCATGGAAGAAGCGAAAACTTCCAGAACGAACGCGGAAAACGAAAAATTCCGTGGAAAGCGACGAAGATGCTTTTGAAGCAAATTTTATTGACAACACAGATGCCGAGTCTATTCCTGATAAACAATCATCTCCTGGTCAGTCGTTGtcagtaaaactaaaaaaacaatcaGGCAAGACTTCTAATTCTAAGTCAAGTGAAGAGTACGATTTAACTGATGGACagctatatttattgaaaaataacaagctCATTCCCGTTACATTAGATGTAGTCCTTAAAGCTGTAAAATAA
- Protein Sequence
- MVRTYIPKGNKNKWTEEQMQLAIESVNSGKAIASTAKKFGIPRSTLQRKIQCINSPDYEEKVPGFRKAFSDEEEDLLAKYLKALEDKLFVFTRTDVRRLAFQFAERYQPNHRFNKKEGLAGQDWMTNFIKRHPQLSIKKAERISGSDPLELNEEAVLEFFSVLNSVMKQYEFPASRIYNADEMSIIIVPDEMPKITPATKNKRLTDVIPPDEAGDTVTIKVCFSASGEYMPMMIVFPRMTIDDTYLQGTPEGTWAECHPNGCIQSEIFYRWLMKFIEFSGSTKENPVLLILNAHVGYIKCFDVTDLAEENGVIIVCVSAFIKHEIQPIDMSFSKSFSNNYIAEVRQWLQLNSPKTVTIDRIAELLGNAFTKTATLEDAVNGFSKSGIYPFNTEIHPFNSHFMAEELDSTTSEVLGEVQNNEQELTCSASKEFIVNIKKEMSLNENSETNRNPSEKSQKRNNSVQRKNIPQSSAEPIRPKRSITKVQKEFPQQNQPWKKRKLPERTRKTKNSVESDEDAFEANFIDNTDAESIPDKQSSPGQSLSVKLKKQSGKTSNSKSSEEYDLTDGQLYLLKNNKLIPVTLDVVLKAVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -