Cflr003095.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- lov
- Assembly
- GCA_000648655.2
- Location
- NW:894768-899712[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-13 1.8e-10 39.8 0.0 5 44 588 627 584 628 0.92
Sequence Information
- Coding Sequence
- ATGTTCGAGCAGCCGAGTCTCAGCATGAGAACCGGTAGTCCCGACGAGGACAGCGCTGCCAACGAGCTGGACAACTACTCGCTCAAGTGGAACAACCACTCGGCCAACTTCGTTCAGTCCTTCGAGGAGCAGTTTCGTCACGATTCCTACGTCGACGTGACTCTTGTTTGCCTAGACGGCATCATCAAGGCCCACAAAATCGTCCTCAGCACCTGCAGTCCATTTTTCGCGCGCATCTTTGCTGAATACGAATCCGACGAGCACGCGATGGTTGTGCTCAAAGACTTCAGCAAAGAGGACCTGAGCATCATCGCGTCATTCATGTACCGAGGCGAGGTCTTTGTCAACTGCGAAAACATGGCCTCAATCCTGGCGATCGCAAAGAATCTCGAGGTCAAGGGCCTCGTGCGCCTGATAAACGAGCACCTGGCTAGGCTCAATGGCCCAGTGACCATTGGATCCCCGGAACCACTGAACGCAGCCTCCCCGACAGAAGCCAAGGAGGAGCACACGAGCGAGATCACAAAAATGGACAGGGACGGCGCGATCAACTCCTCCGACGGCTCGAGTCCCCTCCAATTGACCACGCGTGACGCGCATGCGAGCCCCAGGGACCAGCAAACAGCGTCACTCCCAAGGCCTGGTACCAATCACCAACATCACCATCACCACAGCAGTTCCGAGAACGTCGCTGCGAATCTAATGCCCAGGCGCAAACAGGCCCGACCGAGGAGGCGCTCCGGTGAGGACGGGCCTCAGGACCTGAGCAGCTCGAAGCACGTGGTCAACCTCGAGGTCGGCCATCTCGGTTTGAACCACCATCAGCAAAGCCCCCAAAGAAGCAGCCCGGACCAGTCCAGGCATCGCTCGAGTCCGATCGGCCAACAACACCTATCCGAGGATTTGGAAGAGGAGGCCGAGAACCTTTCGATGAACAGGGACTCGGGACGATCACGCTCCTCATCGAGGTCTGCCCAGCCCACGGTCAAGTCAGAGGGTGAGGAGCCACGCAGCTGTCCGAGCACGCCCCGCACGGCTCACCAGCCCCACCCGAGCCCGAGCTTCGAATACCCCGCGAGCGGACTGCAGACCAGCGCAGCTGGAGTCCCACTCTCGCCACCGATGCACCACCCCAACGAGTACCTGAACAGCATAAACCAGCTGGTGTCCCAGTGGAGCCCGGCCCAGTCGCAGggccaccaccatcaccaccaccatcagcagcagcagcagcaccaacaCATGAGTGGCGTCCATCCACGCCACCCGAGTGACGCCCCTGCAggccagcaacagcagcaaccaCCCCAACCACAACAGCCTCGGACGGCTGCCCAGCCCTACTCGGCTAGTGCGGGCTACCCGGGCGCCTCACCGCCCCTCGTGCCCCTGCCTGCCCCCTACGTGGATGGGCTCAGCCAACAACCCGTGTTCTTTCATCCCGGCGTGCCGGAGAACTTTATCCAGAGCTTGTACGCCGTCGGTCCGCAGGGTCAGGCCCAGCTGCAGCTAGCCACGCCCCAGGGAGCGGCTCAGATGGTGACGCCGAGTATGCTCAGCGAGCAGGAGCAACCGATCTCCGGAACACCGAACCGTAGGCCGAAAAAGTCGGGCCGTCGGCGGCACAGCGAGGGTTACGCCCGCCGCTGGCACGCCGAGCAGTCCGAGCTGGATGCTGCAGGTGGTGGGCACGCGCGCCGCGCCAAAGGCCAACACAGCGCCCCCCGTGGCGGCCCACCGCGCTGCTGGACCAACTACGATCTTTGCAACGCATTGAGGCACGTCTGGGGCAAGAAGATGACCACCAGCCAGGCCAGCCGGACCTTCAGCATACCCTACAACAGCCTGCTCATGTACGTGCGCGGCAAGTACGGCAAGAGCCTCAGGCTGGATGAGCTCAGGGATCTCATCGAGCTCGAGAACAACAACAATGTCAACCTCCAGCGCGCCCAGCAACACCAACAGCAACACCACCATCcgcaccagcagcagcaacagatCAACGGCAAGCGCTCGCACGCCAGGGCTGGACGGGCGCATGCTCCTTCACCACCCCCCGCTCCTTCGgtgcagcagcagcaccaggTCGGTGCCCCGGCGACTACCCCGACCTCGGTGCCTCCGGCCGCGCATCCCTTCTATTTTCCGCCCGAGTTCGCCAACTACCACGTGCCGATGATGCAACACCTGATtcagcagcaccagcagcaacagcagcaggcCGACTGCGAGCTGGGCCGCCGGTCGCGGCGGGTCTCGCGCTCGCACAGTCGTTCGCGCAGTCGGTCGCGGCCCCGCAGCAATGGCCACCTACTCCCCACGTCGGCGCCACCGGCAAGGACATCGTCGACGCCCTCGGCGCAGCACTCGCAGCACCCCCAGCGGCCGTCCAGCCGGTCGAGCAACTCGAGCGACCGCTCGCCCCTTGCCCTCTCGCTGACGAGGCCGCACCTTCTGGTGCAGCATCAGCACCAGGAAGGGATCAGCGCCGAGGAGGAGCAGCTGCTGCGCCGGCGAATTTGCGAGCAGCTCGATTGA
- Protein Sequence
- MFEQPSLSMRTGSPDEDSAANELDNYSLKWNNHSANFVQSFEEQFRHDSYVDVTLVCLDGIIKAHKIVLSTCSPFFARIFAEYESDEHAMVVLKDFSKEDLSIIASFMYRGEVFVNCENMASILAIAKNLEVKGLVRLINEHLARLNGPVTIGSPEPLNAASPTEAKEEHTSEITKMDRDGAINSSDGSSPLQLTTRDAHASPRDQQTASLPRPGTNHQHHHHHSSSENVAANLMPRRKQARPRRRSGEDGPQDLSSSKHVVNLEVGHLGLNHHQQSPQRSSPDQSRHRSSPIGQQHLSEDLEEEAENLSMNRDSGRSRSSSRSAQPTVKSEGEEPRSCPSTPRTAHQPHPSPSFEYPASGLQTSAAGVPLSPPMHHPNEYLNSINQLVSQWSPAQSQGHHHHHHHQQQQQHQHMSGVHPRHPSDAPAGQQQQQPPQPQQPRTAAQPYSASAGYPGASPPLVPLPAPYVDGLSQQPVFFHPGVPENFIQSLYAVGPQGQAQLQLATPQGAAQMVTPSMLSEQEQPISGTPNRRPKKSGRRRHSEGYARRWHAEQSELDAAGGGHARRAKGQHSAPRGGPPRCWTNYDLCNALRHVWGKKMTTSQASRTFSIPYNSLLMYVRGKYGKSLRLDELRDLIELENNNNVNLQRAQQHQQQHHHPHQQQQQINGKRSHARAGRAHAPSPPPAPSVQQQHQVGAPATTPTSVPPAAHPFYFPPEFANYHVPMMQHLIQQHQQQQQQADCELGRRSRRVSRSHSRSRSRSRPRSNGHLLPTSAPPARTSSTPSAQHSQHPQRPSSRSSNSSDRSPLALSLTRPHLLVQHQHQEGISAEEEQLLRRRICEQLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00368912; iTF_00368045; iTF_00368198;
- 90% Identity
- iTF_00368912;
- 80% Identity
- iTF_00368912;