Cflr000607.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- bab1
- Assembly
- GCA_000648655.2
- Location
- NW:1122731-1302870[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-17 1.8e-14 52.5 0.0 1 43 401 444 401 446 0.95 2 2 1.7 1.9e+03 -2.0 0.6 6 15 525 534 521 536 0.87
Sequence Information
- Coding Sequence
- ATGGCGGACAGCAGCAATAGCAGCCAGCACCAGAGCGGGGCCGGCTCGCCCCAGCAATTTTGCCTTCGCTGGAACAATTACCAGACAAACTTGACGAACGTCTTCGACCAGCTTCTACAGAGCGAGAGCTTCGTCGACGTGACCCTCGCCTGCGACGGCCACTCCGTCAAGGCCCACAAGATGGTCCTCTCGGCGTGCAGTCCCTACTTCCAGGCCCTCTTCTTCGACAACCCCTGCCAGCACCCGATCGTCATTATGAAGGACGTCAAGTGGCCCGAGCTCAAGGCCGCCGTCGAGTTCATGTACAAGGGCGAGATTAACGTCTCGCAGGACCAGATCGGCCCGCTCCTCAAGGTGGCCGAGAGCCTCAAGATACGGGGCCTCGCCGACGTAAGCAGCGAGCACGAGCTCACGTCCCGGCCGAGCCTCGAGGAGAGCCTCAACCTCGCGGTCGCGGCCAGCGGTGGCTCGAGCGCGCCGGCCCGGGCGAGCAAGAAGCGCCGCATGACCTCGGGTGATCGTTCACCGAGCCAGACCGCGGTCGGCTGCAGTCCCGAGCGCAACGCCGGCAACGAGCGGGACGAGCAGGACTCGGCGAGCACGGGCCACGACAGCCACGGCCTGAACTCGTCCTCGACGCCGCGCAGCCTCGGCTCCCCCAGTGTGCCGAGCATCAGCGTGACGCCTCAGATCAGCCTGCACGAGATGCCCGTCAGTCTGTCCCTGCCACCGCCGCCCATGCAGCCCCCGACCCCGCACGGCCAGTCTGCCGGTGGCGCCGGTGGTGGCCACCACGTGTCGGTCGGCCACGTGGGCTCGGCCGGTGCTGGCTCGCACACGCCCGTCAACCACCTGAGCGCCCACTCGGTCGCCCAACAGCTCTCGGTCGCCCAGCACCAACAGCAGGCggcccaccaccaccaccaacagcagcagcaccaccaccaccagacCAACCAGGGGGGCCAGCCCTCCCTGACCGACGACGACATCAAGCCCGGGATCGCCGAGATGATTCGCGAGGAGGAAAGGGCCAAGTTGTTGGAATCGTCCCACGCTTGGCTCGGAGCCTCCACCTCCAGTATAGCAGCAGACAGCTACCAGTACCAGTTGCAGTCGATGTGGCAAAAGTGCTGGAACACCAACCAGGGATTGGTGCACCATCTTCGTTTTCGGGAACGCGGGCCTTTGAAGTCCTGGCGGCCGGAAACGATGGCGGAAGCGATATTCAGCGTGCTCAAGGAAGGCCTCTCGTTGAGCCAAGCTGCGAGgAAATACGATATTCCATACCCGACGTTCGTACTTTATGCGAATCGAGTTCACAACATGCTCGGACCGAGCGCCGACAGCGGAGCGGGTAAGTATCTGCGGCCGAAGGGCCGAGGGAGGCCGCAAAGGATCCTCCTGGGAGTTTGGCCGGACGAGCACATCCGCGGCGTGATTCGGGCGGTGGTCTTCCGCGACGGTCAGTCGCCGCACGTGGTCAAGGAGGAACCGGCCGCCATTTACCCGAGCCTCGCGAATTACGGCGCCTGCAACGGGCCCGAGGGAGCGGTCAGCCCGAGCGCCGCCGCGGCCGCGGTCGCTGCCGTCGCTCAAGGACTCAGAAACCAGATGTGCAGCATGGTGGCGGCGGCGCACTCACAGCAGCACGACATGCTGGCAACGAATCTATCCACAAACCTCTCGACGAGTCTCTCCTCCAACCTCCAAGCAGCGATGCAGCAGcagcagcaccaccaccaccatcacagcagcagcagcagcagcaacaacagcaacaacaacaACGACAACTCGCCGCTGAACCTCGGCCTCGGCAGCCCCGACACCGGTGGCCCACCCGACAGTCCCATCAGCGACAGTCCGCTCGGCTCGCTCATGGACCCGGGCCACCACCTGTCCTCGAGCGTCGAGGTCGGCATCGGCGTCAGCGGCATGACCTACAAGCCGACCCGCAGCTTCGTCAGCCCAAGGCCCGAGAATCTCTTCCAGGAGGACATAAGCGAGCTAGTCAAGAGCTCGCACGCCGCCCTCAAGGACAAAGAGAAGATAGCCGTCAAGCTCGAGCCCCTGGCGGACTCGCGGTGCGAATAG
- Protein Sequence
- MADSSNSSQHQSGAGSPQQFCLRWNNYQTNLTNVFDQLLQSESFVDVTLACDGHSVKAHKMVLSACSPYFQALFFDNPCQHPIVIMKDVKWPELKAAVEFMYKGEINVSQDQIGPLLKVAESLKIRGLADVSSEHELTSRPSLEESLNLAVAASGGSSAPARASKKRRMTSGDRSPSQTAVGCSPERNAGNERDEQDSASTGHDSHGLNSSSTPRSLGSPSVPSISVTPQISLHEMPVSLSLPPPPMQPPTPHGQSAGGAGGGHHVSVGHVGSAGAGSHTPVNHLSAHSVAQQLSVAQHQQQAAHHHHQQQQHHHHQTNQGGQPSLTDDDIKPGIAEMIREEERAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQGLVHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADSGAGKYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGQSPHVVKEEPAAIYPSLANYGACNGPEGAVSPSAAAAAVAAVAQGLRNQMCSMVAAAHSQQHDMLATNLSTNLSTSLSSNLQAAMQQQQHHHHHHSSSSSSNNSNNNNDNSPLNLGLGSPDTGGPPDSPISDSPLGSLMDPGHHLSSSVEVGIGVSGMTYKPTRSFVSPRPENLFQEDISELVKSSHAALKDKEKIAVKLEPLADSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00368888;
- 90% Identity
- iTF_00368888;
- 80% Identity
- iTF_00368888;