Cflr003344.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- bab2
- Assembly
- GCA_000648655.2
- Location
- NW:373269-375843[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.8e-09 5.5e-06 25.4 0.0 3 37 219 253 217 258 0.88 2 4 6.5e-14 7.4e-11 41.0 0.0 2 39 268 304 267 308 0.91 3 4 0.0043 4.9 6.3 0.0 7 34 325 351 321 358 0.84 4 4 3.3e-09 3.8e-06 25.9 0.0 4 37 382 415 379 420 0.93
Sequence Information
- Coding Sequence
- ATGGGTCCGAGTGCCAATAACGAAGACTTGGAGAAAGATGATGCTCCTACATTGTCCATAACAGAGGTAATCGCTGATGACGGTGAAGCCTGCAACAATGTCAGAAGTGAGGACTACGGCAGCCAGTTCGCAGGAGTCGTACGCGAACTTTTTCTCGATGAGTCCATGCTCGACATCACCCTCTGCGCTTCTGGCCACAAGATTCGCGCCCATCGCATGGTTCTCAGTGCTTGCAGTCAACTCTTTCAAGAGCTTCTGTCTGACAGTAACGAGGATCAGACAATTTTTATCCCTGACGTAAATCTGGATCATCTACAGGCTATTGTCTCATTTTGTTACAATGGAGAAATTAGGGTACCTTCTACAGAAATCACTGAACTGTTAACTTTGGCTCAGCAATTAAAGATCGAAGGTCTACGAGAAGTTGCTGGCTTAGTAGAGTCGGACGCATCGAATGATCAAGCTGAAGATGATGAACCATATTTTCAGGAATCTACTTTTGTATATGATGAAGATTCAGATGGTATTGAAGAAGTTACACTTGTCAGTAATACAACTgcaaataatagtaaaataacaaGTACTTATAGTACTCCAAATTCAAACAAGACTTTCAAAAGAAAGAGAAGTTCTAGCAAAAAAGAATATTCTGATAACCAATTAGCTGCTGCCATTAAGGATATATGTGCTGGTAAATCATTGTTAGAAGCAGCTGAAAAACATAGCATCCCCAAGTCTACATTGTACATGCGTGCAAAAGCTTTAGGTGTAAAGATAAATACCACCAAGGTTATCTACACAGCTGAAGATATGAAGGAGGCAGTTAAATCAGTGTCAGagggaTGTAGTCTTCAACAAGCTGCTGTTGTTCATGGAATACCAAAAACTGTTCTGTGGAGGAGAGTTCAGAAAGAAGGTGTTCCCATAACTAGTCgcgataaaagaaaaagttatggTAGTGAAAGGCGAGAAGCTGCGGTAAAAGCTTTAGAAAGAGGTGAAACTCTATCTAAAGTTTCCATGGAATATAAAATTCCAAAGACAACCCTTTTTAGAGACAAAACTCGTTTAATTAATCAAGGAAAATTGCCTAAATCATTTTGGAAAAGGCGAAAATCTCTAGAAGATGAGCAAAAACAAAACCGTTTGGAAAAAGCTGTATTGGCTTGTAAAACCGGAAGAATGTCGCAGGCTGCAGCTTCTTTAACTTATCAAATACCAAAGACAACTATATGGCGGCATCTACATAAAGAACTTAAAGAATGTTCTTCTCCGACACCTGTAAAAcctaataaaatagaaaatacgaTTTCTATTCGAAAAAGTCAAGCTGTCGTTAAATCAGAAGAATCAAATGAAGATGAATTTGAACCATATTGTcctGAGGAGACAGAAATGAATATAACATACattaatgaagaaaatatgGAAGAGCCAGTTATGATTCTTACTAGTGCTGATGGGGACGAGTTAAATCTATcatcagaaaaacaaaactACATAGTTGTACAGGATGGTACATCtggtgataattttataccCTCTGAAAtcggaaattttgaaaatccatCCTTTACGAAAAGTTAA
- Protein Sequence
- MGPSANNEDLEKDDAPTLSITEVIADDGEACNNVRSEDYGSQFAGVVRELFLDESMLDITLCASGHKIRAHRMVLSACSQLFQELLSDSNEDQTIFIPDVNLDHLQAIVSFCYNGEIRVPSTEITELLTLAQQLKIEGLREVAGLVESDASNDQAEDDEPYFQESTFVYDEDSDGIEEVTLVSNTTANNSKITSTYSTPNSNKTFKRKRSSSKKEYSDNQLAAAIKDICAGKSLLEAAEKHSIPKSTLYMRAKALGVKINTTKVIYTAEDMKEAVKSVSEGCSLQQAAVVHGIPKTVLWRRVQKEGVPITSRDKRKSYGSERREAAVKALERGETLSKVSMEYKIPKTTLFRDKTRLINQGKLPKSFWKRRKSLEDEQKQNRLEKAVLACKTGRMSQAAASLTYQIPKTTIWRHLHKELKECSSPTPVKPNKIENTISIRKSQAVVKSEESNEDEFEPYCPEETEMNITYINEENMEEPVMILTSADGDELNLSSEKQNYIVVQDGTSGDNFIPSEIGNFENPSFTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00368918;
- 90% Identity
- iTF_00368918;
- 80% Identity
- iTF_00368918;