Cflr011301.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- bab2
- Assembly
- GCA_000648655.2
- Location
- NW:237999-276250[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4e-12 4.5e-09 35.2 0.0 1 39 520 559 520 563 0.90 2 4 7.3e-12 8.4e-09 34.4 0.0 2 39 575 612 574 615 0.94 3 4 6.4e-19 7.4e-16 57.0 0.0 1 45 629 674 629 674 0.97 4 4 1.2e-18 1.3e-15 56.1 0.1 1 42 681 723 681 724 0.97
Sequence Information
- Coding Sequence
- ATGCGCGATGGTTACAGCGGAGGGATGGCCGGGCAGCACTACTGCCTGCGCTGGAACAACTACCAGTCCAACATGACGTCCGTGTTCCACCAGCTCCTCCAGACCGAAGCCTTTGTCGACGTGACCCTCGCCTGCAACGAGGCCTCCCTCAAGGCTCACAAGGTGGTGCTCTCGGCATGCAGCTCGTACTTTCAGAAGCTGCTGCTGTCCAACCCCTGCAAGCACCCGACCATCATCATGCCGCAGGACGTCTGCTTCAACGACCTCAAGTTCATCATCGAGTTCGTCTACAGGGGCGAGATCGACGTCTCGCAGGCAGAACTTCAGTCGCTCCTGAAAACGGCCGATCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCCGAGAGCCGAGAAGGAGGAGGCGGCAGTGTCGGCTCACCATCGGGAGTCGGAGGAGGAGGCGGTGGTCCAACAGTCGGGGGCCTTATCGAGGGGCCCTCGGTCAGCCTGAGCTCGCCACCCCGTGACTCGAGCACACCCCACAGGTTCAATTTCACAAAGCTCAAGAGCAGCAGGCACCACCACCCGCGCTACAAGAGGCCGCGCACGTCCTTCGACGTCGGCGGCAACAATCGGCTAGCCAACACGGACCGGCATCTGTTACTGCACTCGCagcaccatcaccaccaccaacaacaacaacaacaacgcaaTCATCACAATCATCTGCAGCaccagcatcatcatcatcatcatcaagttGACTCGGGCAAGTACAAGGAAGAGGACTTTGTCGAGAGCTACGTGAGGGATTGCAACAAGGAGAACCGCCGTGATTGTTGGCCGGTCGAAGATGAAGATTGCATGGAGACGACAACGACGAGCaccacagcagcagcagcagcaacagcagaagcagcagcagcagtagcaggaACAACAGTAGTCCTGGACTCGTGTCAGCGTAACAGCAGCGCCGGCGCCGGCGGTGGAAGTGGTGGCGCGGGAGGTGACGGCGGTGCCGGCGGAGCTGCTGCTGGTGGACCtgacaacaacaacatcagCAATACCAACAGCAACGGCAGTAACAACAGTAGCAACAGCAACGGGCCTGtcgccaacaacaacaataccCCCGCGGCGACTAATAACAACGGTGACGACATGTTCTGTCACACAGGTCTCGGCCATTACGGCCATCATCCGGATCCAGCTGAGGTCGATTTGCCGCCCGAGACGCAGCCAACGCCGCCCAGTGCGACCCTCGTTGGTACGACCATTACCCACCTCAGGGACGCCGAGCATCAGACGGCTGACATCCAGAGCTGCGACAGCGTGAAGATAAAGTTCGAGACGTTGCACACGATGGACTCGTCGGACACGATAGACATCGACAGCCACATGTCCGACCGTGCGAGCGTGAGCTCGAAAAACGCGGACGACaacatgatgatgataacaccCGAGCTCCTCGGTCTCATGCCCTCGAGCAGCTCGGTGCACTCCGACTCGGGTGAAAACAACTCGCGCAGTCACTCCGGCCAGTCGGGCGGACACCATCACGGCTCCAAGTCGTGGACCCAGGAGGACATGGAGGCAGCCCTCGATGCCCTCAGAAATCACGACATGAGCCTCACCAAGGCCTCTGCGACGTTTGGCATACCATCGACGACTCTCTGGCAGCGGGCGCACCGGTTGGGTATCGACACGCCCAAAAAGGACGGCCCGACCAAGTCGTGGAGCGACGAGAGCCTGAACAACGCCCTGGACGCCCTACGTACGGGTACCATATCGGCCAACAAGGCCTCGAAGGCGTTCGGCATACCCTCGAGCACCCTGTACAAAATAGCGAGGCGAGAGGGCATTAGGTTGGCGGCGCCGTTCAACGCGAGCCCAACTACCTGGACGCCGGCTGATCTAGACCGCGCGCTCGAGGCCATACGCTCCGGACAGACCTCGGTGCAGCGCGCCTCGACCGAGTTTGGCATACCCACGGGCACGCTATACGGCAGGTGCAAGAGGGAGGGTATTGAGCTCAGTAGGAGCAATCCTACGCCCTGGAGCGAGGACGCCATGACCGAGGCTCTCGAGGCTGTTAgactgGGACACATGAGCATTAATCAAGCGGCGATACACTATAATCTGCCGTACTCGTCGCTGTACGGGCGCTTCAAGCGGGGCAAGTACGAGGAGCCGGTGGTCAACGACATGTCGCAGGACGGCTCGTCGCAGCACTTCCACCAAAGTCCCACCCAGAATCACTCGTCCTCCCTTCCCGACCAGATGCCTTACCAGGGCAGCTGA
- Protein Sequence
- MRDGYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESREGGGGSVGSPSGVGGGGGGPTVGGLIEGPSVSLSSPPRDSSTPHRFNFTKLKSSRHHHPRYKRPRTSFDVGGNNRLANTDRHLLLHSQHHHHHQQQQQQRNHHNHLQHQHHHHHHQVDSGKYKEEDFVESYVRDCNKENRRDCWPVEDEDCMETTTTSTTAAAAATAEAAAAVAGTTVVLDSCQRNSSAGAGGGSGGAGGDGGAGGAAAGGPDNNNISNTNSNGSNNSSNSNGPVANNNNTPAATNNNGDDMFCHTGLGHYGHHPDPAEVDLPPETQPTPPSATLVGTTITHLRDAEHQTADIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSSSSVHSDSGENNSRSHSGQSGGHHHGSKSWTQEDMEAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNDMSQDGSSQHFHQSPTQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00368901;
- 90% Identity
- iTF_00368901;
- 80% Identity
- iTF_00368901;