Basic Information

Insect: Copidosoma aretas
Gene Symbol: ush
Assembly: GCA_030522625.1
Location: JAPYYV010018323.1:1-8462[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.057 8.4 8.1 0.6 3 21 174 192 172 197 0.91

2 8 4.5e-05 0.0067 17.9 1.4 1 23 240 262 240 262 0.98

3 8 0.092 14 7.5 2.2 2 20 306 324 305 326 0.93

4 8 0.015 2.3 9.9 4.4 2 21 570 589 569 590 0.94

5 8 0.071 11 7.8 0.0 3 20 617 634 615 636 0.91

6 8 0.0064 0.95 11.1 0.0 2 23 675 696 674 696 0.96

7 8 0.0094 1.4 10.6 1.4 1 23 702 724 702 724 0.99

8 8 0.23 34 6.2 0.5 3 21 847 865 846 866 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.057	8.4	8.1	0.6	3	21	174	192	172	197	0.91
2	8	4.5e-05	0.0067	17.9	1.4	1	23	240	262	240	262	0.98
3	8	0.092	14	7.5	2.2	2	20	306	324	305	326	0.93
4	8	0.015	2.3	9.9	4.4	2	21	570	589	569	590	0.94
5	8	0.071	11	7.8	0.0	3	20	617	634	615	636	0.91
6	8	0.0064	0.95	11.1	0.0	2	23	675	696	674	696	0.96
7	8	0.0094	1.4	10.6	1.4	1	23	702	724	702	724	0.99
8	8	0.23	34	6.2	0.5	3	21	847	865	846	866	0.92

Sequence Information

Coding Sequence: CCCCCGCGGCCGAGTTCGGTGCAAGACCTGAGCCCAAAGTCGACGGGCCGAGGAGGCCCCGATCCCGGCACTACCGACGAGGAGATGACGGTGCGCGAGGACGAGGCCTGCGGTCGAGCCTCGACGTCCTCGTCGGCCTCGACGACCGGCTCGGGCCAGCAGCGCAGGAGCCAGGAGCAGGAGAGGCGCGCGGGCTCGTCCTCCTCGATGGACGACGCCGCGGCCCAGGAGCCGAAGAGGCCCAGACTGAAGGAGGAGGCCGGGGCCGTCGCCGCCACGACGCCCAGACTGAGACTCAATGCTAGTCTGGCGACGGATCCGGCGCTCAGGCCCCAGGCCGTCGCCGCCCTCACCATCAAGCCCGAGAACCCGGCCTCGCCCCCCAACCCGACGCCGCCGCTCTCCGTCGGTCTGCAGAATGCCATAGCCTCGGGCCGCCTCTTCGTCCTGCCGAACGACGCGAGCAAGGACCCGGGCCTCGTCGAGGCCGCGGTGGCGCCGCGCCCGGCCGGCCTGTTCTGCCCGCCCTGCGGCATCAGGTACAGCTCGGCGAGCACCCTGGACGCCCATCGCAGGTACTACTGCTCGCACCGGCCGCGGCTCGAGAGCGAGGCCGAGAACAACGAGGAGGACGAGGACGGCAACCGTATGACCGGCTCGGCGACGGGGAACGGCGGCGGGGGCGCGAGGGCCGAGACGGCGCCGCAGCGCAAGGCGTACGCCTGTCCGCACTGCACCTACAGCGCCGACAAGAAGGTCTCGCTCAACCGGCACATGAGGATGCACGCGGCCTCGCCGGTGCAGCCGGCACAGACGGCCAGCAACTCGGCCCAGTCGCCGGCTCAGCACAACagcggcgtcgtcgtcgtcgtgcagGGCGCCTCGAACGGGGCCCTCAACGAGGAGGCCGAGAAATACTGCCGGAACTGCGACATCAGGTTCAGCTCGCTGAAGACGTTTCGGGCGCACAAGACGCACTACTGCAGCACGAGGCACGTGGTGAAGGACACCCTACCGTCAGGGGGCGCGCCGGCACAGGCGGCGATGGCAGCCTCGACAGCGCCCGCCTCCTCCCTGAAGGGCTCGCCCCCGACGAGCTCGAGCCCGGGCGACTCGCCGCCGCCCCTGCACTGTCTCGCCCTGCCGACCAACCCGATCCTCATAGTCCCCTACTCGCTGGTGCGCACCGCCTCGTTCCTCGCGGCGCCGGGCCTGCCCGCCCCGGACTCGCCCTGCTTCCTACTGCCCAACGGCACGCTGCAGCCGATGACGAGGAGCCTGACGGCCACCACGACGACcggcccgacgacgacgacgacggtcgCGCAGATACCCGCGCCCGTCCAGCTCGAGCACACGAATAGCGTCCTGAGGGCGGCCAACAACAAGCTCGGCGCGCCGCTCGGCCTCGGACCGGCCGGCTCGCCCAACTCGGCCGGCTCCTCCACGCCGCTCGACCTCAGCGTCAGGAGGTCACCGGATCACGAGAAGGAGAACCGAGTCTCGCCCGTGTCGACGTCCCTGCCGTGCGCCCCGCCGACGGCGAGCAGTCCCCGCTCCCGGGGCAGCGCGAGCCCGCGCGCCCGATCCCTGCCCGGGGCCCAGGCGCCCGGAGCCCCGCCCGCGTCGACCACCGAGCTCGCGCTCAGGCTCGCCGAACTGCCGCCCCCGCCGGTCCCCGGCGTCCTCGTCAAGCAGGGAGTTTCAAGGTGCAAAGAGTGCAACATAGTGTTCTGCCGGCACGAGAACTTCGTCGCCCACAAGAAGCACTACTGCCAGGCGCGCGAGAGCAGCGTCACGAGTCCGCCCTCCCCGGGCACGCCCTCGCCGCCCCTGGTCCAGCTGATTTGCGCCGCCTGCGGCATCAAGTTCGCCTCGATGGACAACCTCGTCGCCCACCAGGCGTTCTACTGTCCGAAGCGGCCCGAGTCCCAGGAGCATTACTCCCGGTGTCCCAAGTGCAAGTGCGTCACCGAGCCGGGCGTATCCCATGCGTGCGCCGGCGGACAAACCGGCGGTTGGCGGTGCCCGGTGTGCGGGGCGGTGAGCCCGACCGCCGGCGCGGCCCAGCGGCACATGGACTCGCACCAGGGCGTCAAGGCCTTCCGCTGCACGATCTGCCGGTACAAGGGCAACACCCTCCGGGGCATGAGGACGCACATAAGGATGCACTTCGACAAGCGCGGCGCGGATCTGCAGGAGGAGAACTACATCACGTGCGTGCTGGAGGACGACACGACAGCGCCGACCGCGGAGCCAGTCCCGGCGACCACGCCCGAGGAGACAATCCCGGCGGatccccagcagcagcagcagcagctgaacGGCAAGGGCGAGTCGGCGCGCAAGCAGAGCAGTCCCCCGGCCGGCCTGTCGCCCGCCGCCTCGCCCGCCCCGAGCGCCCCCTCACCGGCACCGTGCGCCGGCAAAGTCAAGCTGGAGCGCGAGGACAGTCCCCCGGCCCAGCCGGTCGCCGCCGCGGCGGCGGCCACCACCGCGGAGGAGAGCCCCGAGGCCGGGAAGTCCGGGCCCCGCTACTGCCGCTCCTGCGACATAAGCTTCAACTACATGAGCACCTTCATCGCCCACAAGAAGTTCTACTGCTCCAGCCACGCTGGCGAGGctagcaacaacaacaacaacagcaacagcaacaacaacaacaacaatacgACATTTTAA
Protein Sequence: PPRPSSVQDLSPKSTGRGGPDPGTTDEEMTVREDEACGRASTSSSASTTGSGQQRRSQEQERRAGSSSSMDDAAAQEPKRPRLKEEAGAVAATTPRLRLNASLATDPALRPQAVAALTIKPENPASPPNPTPPLSVGLQNAIASGRLFVLPNDASKDPGLVEAAVAPRPAGLFCPPCGIRYSSASTLDAHRRYYCSHRPRLESEAENNEEDEDGNRMTGSATGNGGGGARAETAPQRKAYACPHCTYSADKKVSLNRHMRMHAASPVQPAQTASNSAQSPAQHNSGVVVVVQGASNGALNEEAEKYCRNCDIRFSSLKTFRAHKTHYCSTRHVVKDTLPSGGAPAQAAMAASTAPASSLKGSPPTSSSPGDSPPPLHCLALPTNPILIVPYSLVRTASFLAAPGLPAPDSPCFLLPNGTLQPMTRSLTATTTTGPTTTTTVAQIPAPVQLEHTNSVLRAANNKLGAPLGLGPAGSPNSAGSSTPLDLSVRRSPDHEKENRVSPVSTSLPCAPPTASSPRSRGSASPRARSLPGAQAPGAPPASTTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARESSVTSPPSPGTPSPPLVQLICAACGIKFASMDNLVAHQAFYCPKRPESQEHYSRCPKCKCVTEPGVSHACAGGQTGGWRCPVCGAVSPTAGAAQRHMDSHQGVKAFRCTICRYKGNTLRGMRTHIRMHFDKRGADLQEENYITCVLEDDTTAPTAEPVPATTPEETIPADPQQQQQQLNGKGESARKQSSPPAGLSPAASPAPSAPSPAPCAGKVKLEREDSPPAQPVAAAAAATTAEESPEAGKSGPRYCRSCDISFNYMSTFIAHKKFYCSSHAGEASNNNNNSNSNNNNNNTTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00369169;
90% Identity: -
80% Identity: -