Care013871.1
Basic Information
- Insect
- Copidosoma aretas
- Gene Symbol
- RREB1
- Assembly
- GCA_030522625.1
- Location
- JAPYYV010014178.1:22718-29164[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0052 0.77 11.4 0.0 1 23 87 109 87 109 0.97 2 13 0.00059 0.088 14.4 0.3 1 23 145 167 145 167 0.98 3 13 8.1e-06 0.0012 20.2 0.7 1 23 173 196 173 196 0.98 4 13 3.1 4.7e+02 2.6 0.2 1 19 344 362 344 364 0.85 5 13 0.91 1.3e+02 4.3 0.1 1 23 526 548 526 548 0.97 6 13 0.00035 0.052 15.1 1.4 1 23 557 579 557 579 0.98 7 13 0.00031 0.046 15.2 2.1 1 23 585 608 585 608 0.97 8 13 0.00049 0.073 14.6 4.1 1 23 1042 1065 1042 1065 0.96 9 13 0.00023 0.035 15.6 0.1 2 23 1361 1382 1360 1382 0.97 10 13 0.14 20 6.9 4.7 1 23 1388 1411 1388 1411 0.96 11 13 0.028 4.2 9.1 1.9 1 23 1519 1543 1519 1543 0.92 12 13 0.019 2.8 9.7 0.4 3 23 1723 1743 1721 1743 0.93 13 13 0.073 11 7.8 4.5 1 23 1749 1771 1749 1771 0.98
Sequence Information
- Coding Sequence
- ATGCGTGATACAAAATTTGACTCGCGGTATACGCAGGAGACAAGGGAGTTTCGGAAGAAGGAGCCGCACCGCAGACATCCGGCTACGGTGGGATCGGATGCTGCTTGCGTGACAGCGGAGACCGGTCCTGATCACCATCGCGGCGACAGcagccaccaccaccagcagcaccTGCAGTCGGACGTTGCATCAGCCACGCTCCGTTTCAAGCTCGAACAGGCCGTCGACGACCAGCAGCCGGAAACAACCAGCGGCAGCTACGCGTGCCCGGCCTGCCCGGCCGTTCTGTCGAGCCCGCGCGAGCTGACGAACCACCTGCGGGGCCACAACTCGCCGCACCGCgtcagcagcaccagcagcaccgGCACCACagctgcgacgacgacgaccggcGCCACCTCGGACGGGGGCAGCGGGGCCGAGGACGCCGACTACGTCTGCGGCGTCTGCCACAAGCAGCTCAGCTCGGCGAGCTCGCTCGACCGCCACGTTCTCGTGCACTCGGGCGAGCGGCCCTTTCGTTGCGGCCGCTGCGACATGTCCTTCACGACCAACGGCAACATGAATCGGCACGCCCGCACGGCCCACGGCTCCTCGTCCCTCTCGCCCTCCGAGATCGGCTGTCACAGTTGCACCGACTCCGGGGGCAACGACGACAGCGGCAACGAGCGACAGCCCCTGACATTCAACGGCTGCGCGGCCCTCGACGCGTACAACAACAACGAGACGGGCGACAAGAAGCGCAAGCGCTACAGGCTGGCCGATGACAATTATCACCATTACCGCgtcaacgacgacgacgaggacgccGAGGACGAGGACATGGGCATGGACGTGGacgtggaggaggaggaggaggaggagtcgAGGAGAAAGCGCAAGCCGGCCCACTACTACGGTAGCCGACGCTCCGTCGTTGGATTCGCCGATCTCGTCCACACGGACTTCTCGTGCGGTAATTTTCCGCGAATAGCGCGCTACGAGTGCGAGAGGACCCTCCACAGGCCGGCCTCGAACGAGCTGTCCAGGTACATGTGCGCCAATTGCCCGAGGGCCTTTCCCTGCCGCTCGGCCCTCGACGACCACGAGACGGATTGTCTGCGGTCCACCTCCTCCTCGTCCCCGTCGCCGGACAAGCGCTCCtcctccgccgccgccgccgccgccgccgccgcctccgCGACCTACGCGCAGTGCCGAAGCACCAACAACGGCCAGGAGGACTTTTTCGCCATGCTGAATCTGCGGAACAGGTCCGCGGCAGCCAGCCTCGCCGCGGCGGCCGAGAgtcacaacaacaacaacaacaactgccAGGGCGAGCTGGCCGACATACAGAGCATACTCAACGTCACGGCCCACGGCTCGAGTATACTGCAGTTGCGCAACAAGGCCGGGACGCCCGACAATTGTCCGGTCAGACAGCGCGCCTCGTCCCAGGCCTCGGGCTCCTCGGGCTCGTCGAGCACGCCCCATCACTCGGCCGCGTCGGCCGCGGACCACAGCGGCGGCCTGGAGGAGGAGGACCAGGACGCCTTCGCCGCCGAGTTTCGCAAGATGAAGCTCAAGGGCGAGTTTCCCTGTCGGCTCTGCGCGAGCATATTCCCGAATTTGCGCGCCCTCAAGGGCCACAGTCGGGTTCACGTCAACACGATACCCGGCAAGCCGTTTCCCTGCAACGTATGCACGTACGAGTGCATCGACAAGAACGCCCTGATGAAGCACATGAAGTCGCACAACGGGCCGAGGCCGTACGAGTGCTCGTTGTGCGGCTACGCCTTCACGACCAAGGCCAATTGCGAGAGACACGTGAGAAACAGGCACGGGAAACTGAGCCGCGAGGAGATCAAGGGCGTCCTGATCTATCATCCGAGCGAGGACTCGGCCAACGATCCGCCGATCGCCGAGCCgatcgcctcctcctcctcctcctactcgcCCCGGGCTAGCAGCAGCGCCGCCGCGACCGCCGTTagtcaccaccaccaccaccaccaccacgttCGGGACGAGGTGCGCAAGTCCCTGGTGTACCAGGTAGAGGCCGAAGATCTTTTGCAGCAGCCGCCCGTCGTGGCGGTGTACAATAGCCACGTCGAGGTCTTTCAGAGGCCGTCGCCGAGCGCGCAGCAGCCCCTAGAGCTGACCTACGGCAGGGCCGACGAGCTGCGCCGGCATAACAACATTGACGAGGAGAACAACGGcggcgatgacgacgacgaggacgacgaggacgaggacgacACGGATTCGACTCTGTCTGACGGTAGTCTGGTGAAGCGCGACGGCAGCGGTAGTCCCCGGGCGCTCGAGAACGGCTCCGCCGAGCCCCTCGATCTCACGGTGGACCACGCCGTCCTGGACCTCAGCCAGAAGAGCTCCCCGAGCGCGGCCGAGAGGCCGAAGAACAGCAACGCCAGCACCAACACCAGCGCCACAATCACAATACCCGAGGACAACAACAACACGAGCATCAAACAGCAGCGCCACGAGGAAGCCATAATGTACGGTTCGCAcaaacagcaacaacaacaacaacaacaacaacaacaacaacaacaacagcagcagcagcaagagtTGCTGCTCGCCCAGGCGTACATGAAGGCCAACCAGATGACGGCCCAGCCGGCCCTGCTCGAGAGCCTCTACCCGGGCGCCCAGCTGGCCTACCCGAACGCCTTCGCGGCCTTCCCGAGCGCCGGGGGCCTGCTCCAGCCGTTCGGCGGACTCTTTAGCCCCCACCCGCACCACCAGCTCTTCGCCGGCCACGCGCCGGACATGACGATCAACGGGCCCCTCTACAAGGAGCTCGTCCGCGGTCTGCGCACCAGCGGGGGCAGTCTGGTCGAGTCGCCCGGGGCGAGCATCGGCACCGGCAGCAGTTACCCGCCCTCGTCGGCGGCAACGGCGGTCGTCGCTACGGCCGGCCCCACTCCCAGCACGAGCACGAGCAACGGCGGTGGCTGCGGGACCGGCAACAAGCCCTCGACCTTATCCTCGACCGcgatcaccaccaccaccaccaccaccccctcctcctcgtcgtcggcGAAGCTCGTCATGAAGAACGGGATGCTGATGCCGAAGCAGAAGCAGCGTCGCTACCGGACCGAGCGGCCCTTCAGGTGCGAGCACTGCGGCCACGGGTTCACGCTGCGCAGCAACATGGAGCGCCACGTGAAGCAGCAGCACCCGCAGTACTGGTCACAGAAGCCCAGGGGCACGCACTCGACCCGCGGTAGGCCGCCGgccaatcatcatcatcaacagcacaATCACCACCAGCCGCCCACCTTGCTGCAGAGCCTGAGACAGCCACCGGCGAGGCAGCTGATGTACCAGCCGTATCACGCGGGGGTGCACCGAACAGAGCATCAGGCGCCTGTTAGCCAGGACGTCCCGGAAAGGCTCCCGACCATATCCCCGCAGGTGAAATTTGCCATCCTCGCGCAGCAGCACAAGGCCATCGGCATAAAGACCGAGGAGAACGAGTCcgccgagcagcagcagctcgtgATCGACGAGGGGGCCGTGAGAGAGATGCGCGCCGGGGGCAAGGTCATAAGTCTGCTCAGGGACAAGCTCGAGGCAAAATTCGAGCCCCACGAGAGGCAGAACAGTAACAGCAGCTGCGCCAAGCAGGAGGACAGGATCGTCAAGTCCGAGGACAACGACGCGGACGGCGATAACGAGggcgacgaggaggaggaggaggaggaggacgaggccGAGGAAGATGGCGCCGACGAGGAGAACAGGGACCAGCGCCAGGCCATAGATCCGATGACGGTTGTAAAGACCGAGCTCCAGGTGGTCGACTGCAAGCGTGAGAACGGCAACAACGAGAGCAGCGAGGAGCTGTCCAGCATCTCGGTGATGCTGAGCAACGCGTCCCACAACTACCAGCAGCACTTTCACACGCAGTACATGAGCGAGGAGGAGGGCCTCGTCGCCCCCCTGAGCGACCACTCGGGCAGCGACTCGGTCAACTCGTTGACGGCTGCGCCCACCttcaagaagaagaaaatgaagaagaagaagaaaaagtccGCCTACTCGCTGGCCCCGAACCGGGTCACCTGTCCGTACTGCTCGAGGCCCTTCCCCTGGGCCTCGTCGCTCAACCGCCACATTCTCACCCACACCGGACAAAAGCCCTACGAGTGCCGCTTCTGCCCCCTCTTCTTCACGACAAAATCCAACTGCGACCGCCACCTGCTCAGGAAGCACAAGAAGCAGGCCACCGAGGCGGGACTCACGCGGGCGGCCAGCGTCTCGTCGCCCGAGCTCCTCCAGGCCCCGTCGCCGCCCATCGAGGCTCCTGCTGCCCTTACTGCCACCTGCAACGAACTCCCCGCCGTCATCAACAAAAACAGCCCGCCCACTCAACACCACGACCAGTTTGTCGTCCTCGTCAACGGAACAACGAACGCCTACGCTCCGGCCACAACTGCAGCTGCCACCGTTGCCACGATAAGCAATagtatcagcagcagcagcagcagcagcagcaacaaccaATTCGCCATGAGAAACGTTCCCGAGCGGCCGTACAAGTGCAAAAAGTGTCCGAGCTCGACCTTCTCGACCCTGGACAACCTCATGAAGCACAAGTCAGCTAAGCACGCGGCCGGCTCGGCGACCAACTCCGGCTCCGAGTCGGCCTCCTCGAGCGAGCCCCAGCAGGACTGCAGCCCTTCCTCGCGGAAGAGCAGCACGCAGCACCGGGACTCCTGCTCGTCCCCCCAGCAGCCGGACGAGCCCAAGAACAGCCAGAGCGGCTCCGAGAGCCCGTCCTCCGGCGTCTCGGAGGCGGCGAGCGCCtctaacaacaacaacaacaacaacaacaacaaccacacCAGCGCCACGGTCAAAAAAATGTCGCCGAGAGCGTCCCCGGGCCCACCGACCAGCGAGGCGCCCTACAAGTGCCACATGTACATGTGCGACAGCGGCTTCGCCGAGCGGCAGGACTGCCTCGACCATCTCAAGGCCTGCCACGAGGAGGCCTACAACAGACTGGTCGACAGGGGCGCCCTCGAGAAGGACTACGACGGCAACGATCCGAGCGACGTCGAGGATGCCGCCTCGACGGCCACCAGCAATGGTAACAGCGCGAGGCGCGTGCGCGTCGCAGATTACGccaatcgaaaggtaaTCTGTGCCTTCTGCATGCGCCGCTTCTGGTCGGCGGAGGATCTGCGCCGGCACATGAGGACCCACACGGGCGAGCGCCCGTACTTTTGCGACGTCTGCGCGCAGCGGTTCACCCTGAAGCACAGTATGCTGCGTCACCGAAAGAAGCACGACTCGCCCGACTCGGCGATGTACGTGGGCACGAGCGGCGACGACGAGGACAGCGCGCCCGTCGTCGCGGCCCAGCCGCCCACGATAGCCCAGCGCGcgcgccagcagcagcagcagcagtcgatGCTCACGGTGCCCCAGGTGGCGAGCGTGGCGACGCTGACGTGCGTCGAGGCCGGGGAGAGCAACGGCCACGGGGATTTGATCTCGAATCTGCTGGGCATCGGGGGTAGCGTGGTCGACAAGGCGCTGCAGTTGTCACCCGACGACGCGGCGAAGCTGCTCGGTATCAAGGCCAGCCAGGAATGA
- Protein Sequence
- MRDTKFDSRYTQETREFRKKEPHRRHPATVGSDAACVTAETGPDHHRGDSSHHHQQHLQSDVASATLRFKLEQAVDDQQPETTSGSYACPACPAVLSSPRELTNHLRGHNSPHRVSSTSSTGTTAATTTTGATSDGGSGAEDADYVCGVCHKQLSSASSLDRHVLVHSGERPFRCGRCDMSFTTNGNMNRHARTAHGSSSLSPSEIGCHSCTDSGGNDDSGNERQPLTFNGCAALDAYNNNETGDKKRKRYRLADDNYHHYRVNDDDEDAEDEDMGMDVDVEEEEEEESRRKRKPAHYYGSRRSVVGFADLVHTDFSCGNFPRIARYECERTLHRPASNELSRYMCANCPRAFPCRSALDDHETDCLRSTSSSSPSPDKRSSSAAAAAAAAASATYAQCRSTNNGQEDFFAMLNLRNRSAAASLAAAAESHNNNNNNCQGELADIQSILNVTAHGSSILQLRNKAGTPDNCPVRQRASSQASGSSGSSSTPHHSAASAADHSGGLEEEDQDAFAAEFRKMKLKGEFPCRLCASIFPNLRALKGHSRVHVNTIPGKPFPCNVCTYECIDKNALMKHMKSHNGPRPYECSLCGYAFTTKANCERHVRNRHGKLSREEIKGVLIYHPSEDSANDPPIAEPIASSSSSYSPRASSSAAATAVSHHHHHHHHVRDEVRKSLVYQVEAEDLLQQPPVVAVYNSHVEVFQRPSPSAQQPLELTYGRADELRRHNNIDEENNGGDDDDEDDEDEDDTDSTLSDGSLVKRDGSGSPRALENGSAEPLDLTVDHAVLDLSQKSSPSAAERPKNSNASTNTSATITIPEDNNNTSIKQQRHEEAIMYGSHKQQQQQQQQQQQQQQQQQQQELLLAQAYMKANQMTAQPALLESLYPGAQLAYPNAFAAFPSAGGLLQPFGGLFSPHPHHQLFAGHAPDMTINGPLYKELVRGLRTSGGSLVESPGASIGTGSSYPPSSAATAVVATAGPTPSTSTSNGGGCGTGNKPSTLSSTAITTTTTTTPSSSSSAKLVMKNGMLMPKQKQRRYRTERPFRCEHCGHGFTLRSNMERHVKQQHPQYWSQKPRGTHSTRGRPPANHHHQQHNHHQPPTLLQSLRQPPARQLMYQPYHAGVHRTEHQAPVSQDVPERLPTISPQVKFAILAQQHKAIGIKTEENESAEQQQLVIDEGAVREMRAGGKVISLLRDKLEAKFEPHERQNSNSSCAKQEDRIVKSEDNDADGDNEGDEEEEEEEDEAEEDGADEENRDQRQAIDPMTVVKTELQVVDCKRENGNNESSEELSSISVMLSNASHNYQQHFHTQYMSEEEGLVAPLSDHSGSDSVNSLTAAPTFKKKKMKKKKKKSAYSLAPNRVTCPYCSRPFPWASSLNRHILTHTGQKPYECRFCPLFFTTKSNCDRHLLRKHKKQATEAGLTRAASVSSPELLQAPSPPIEAPAALTATCNELPAVINKNSPPTQHHDQFVVLVNGTTNAYAPATTAAATVATISNSISSSSSSSSNNQFAMRNVPERPYKCKKCPSSTFSTLDNLMKHKSAKHAAGSATNSGSESASSSEPQQDCSPSSRKSSTQHRDSCSSPQQPDEPKNSQSGSESPSSGVSEAASASNNNNNNNNNNHTSATVKKMSPRASPGPPTSEAPYKCHMYMCDSGFAERQDCLDHLKACHEEAYNRLVDRGALEKDYDGNDPSDVEDAASTATSNGNSARRVRVADYANRKVICAFCMRRFWSAEDLRRHMRTHTGERPYFCDVCAQRFTLKHSMLRHRKKHDSPDSAMYVGTSGDDEDSAPVVAAQPPTIAQRARQQQQQQSMLTVPQVASVATLTCVEAGESNGHGDLISNLLGIGGSVVDKALQLSPDDAAKLLGIKASQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -