Care011945.1
Basic Information
- Insect
- Copidosoma aretas
- Gene Symbol
- -
- Assembly
- GCA_030522625.1
- Location
- JAPYYV010011377.1:4081-6985[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.74 1.1e+02 4.6 0.0 2 22 115 134 114 134 0.90 2 14 0.016 2.3 9.9 4.4 1 20 140 159 140 162 0.95 3 14 0.00053 0.079 14.5 0.6 1 23 168 191 168 191 0.94 4 14 6.6e-06 0.00097 20.5 0.8 1 23 197 219 197 219 0.98 5 14 2e-06 0.00029 22.2 0.5 1 23 340 362 340 362 0.98 6 14 0.0029 0.43 12.2 0.3 2 20 372 390 371 392 0.94 7 14 8.6e-05 0.013 17.0 2.3 1 20 410 429 410 432 0.92 8 14 0.0044 0.65 11.6 0.7 1 23 437 460 437 460 0.96 9 14 1.8e-06 0.00027 22.3 0.3 1 23 466 488 466 488 0.98 10 14 0.00078 0.12 14.0 5.4 1 23 495 517 495 517 0.98 11 14 0.00036 0.053 15.1 0.4 3 23 525 545 523 545 0.97 12 14 1.7e-05 0.0025 19.2 0.5 1 23 551 574 551 574 0.96 13 14 0.075 11 7.7 0.1 1 23 588 610 588 610 0.97 14 14 0.0059 0.87 11.2 0.1 2 23 777 798 776 798 0.96
Sequence Information
- Coding Sequence
- ATGGAAACCAGCGAGGGCGAGCACTACGTCACCTTCACACTGGACGAGAGTATACAGAACAACGTCTCGCACGAGGAGATATGCGAACCAGCCGACGACGAATGCGTGCTCACGGAGCACATCAACGAGGTTACGGTGGAAGAGGTGAGCCATGAGGATTTGGGCGAGACGCCCCTGGCCGTAGAAATCATAACGGAAAACTCCGAGGACGGTGAGGAGCAGGGGGcctatatttacataaaaaaagaggCTTCCCAGCAGTTCACCACGGGCGACGAGTCCATGGCTGTCGAGGCTCTGCGACAGCTCGGTGGCATGTACTGCTTCGAAGAAAAGAAGATTCCCTGCCCAACTTGCAAGAATACCTTTGCAGCTGGTGAATTGGCCAAGCATCAGAGCACGTGCTCGTCTACCAAGCACATTTGCACCTTCTGCCGAGAAAAGTTCGAGAGAAAGAACGACCTGACCAATCACATGGTGTGTCACCAGGTCAATAGGCCCCATGCGTGCAGGACGTGTGGAAATCTATTCAAGTCCAAAGCGAGCTTGCAGGCACACATGATGGAGGTTCATCAAGTCGATAGGCCTCACAAGTGCTCGGTTTGCGGAGCTGACTTTCAGAGGCCATCCAGCTTGTCCAATCATATGAAAATTCACAGCTACGTGGCCGGCAGGGCACTGATGCAAGCCAATCATGTGGTTGCTAGTATTGAAACTGTCAAAGAGGTATCTGAAAGTCAAGATAGTCCCATTTTGACCTCGGTTCAATCCATTCAAAGCATTGAATTGCCTCAGGGTCAGTGGACAGCTGTGGAGATTGCTACTGATCAGGGCGATATCGAGGGCCTAGCCATACAACAGGATAAAATTGATTCTGTACAAGAGTACGCTGTATTACCCACTGGAGAAGTTGCACAGCTTACAGAATATACTGCACAAAGTGCTATGgaagacgatgatgaaaatgatgaggGTGACAAAACttacataaaaattgatatacaAGAAAATAAGGGGCACACTTGCAATGTGTGTGGAGTTTCATTTGCGCGTGCAGCTTCTTTAACTATGCATTTGAAAACTCATCCAAAAAGTGAATCTGCTTCACCCGTTGAATGCGAGTATTGCGACAAACAGTTTCAAGATGCTAACTGCTTAGCAAATCATCAAAGTGGCTGCacgaagaaaataatgaaaaattcagGAGCCAAAGAGAAATGGGGCAAGCACGCATGCTCAGACTGTGGTAAAACATTTACgacgaaacaaaaaatgttcagGCATCAGTGGATTCACAGGAGAAAAACGTTTTCCTGCGAAGTTTGCGGCTCTCAGTTTGAAAAACAGACGCAACTCGACACGCACAGACTGTCGTCTCATCCAGCGGGCACGCCTTTTACTTGTCAAGAATGTGGCAAAAGTTTTGTGTCTCGTCAGGGTCTCTGGGAGCATGGCAGAACTCACGCGGGCAGCCCAGCTCATTTTCACTGTGATGTATGTTCTAAGACCTTCTCCTCTAGACAAGGATATTTAATACACCACCGCACTCACACTGGAGAACGACCTTACGGTTGCAAATTTTGTTGGAAGGCTTTTAGAGACGGTGGCACATTGAGGAAGCATGAGAGGATACACACTGGTGAAAGGCCACACGTTTGTCCCCTGTGTCAAAAGTCATTTAATCAAAAAGTAGTTTTGCGCGAACATATCAGGTGGGTTCACGCTGCAGGAAAAAATGAACCTGAACTAACGGGACCGCCGTTTCCGTGTCCACTGTGTGAAATTTTGACTCAAGATCGAGAGGAATTATGTGCCCATATCGTCAAACACTCGGATCAAATGATTGCTGAAGCTAAAGCCAAATCGAATACCTTGCAAGGATCCAGTGGATCGATCAATTTGATAACAATTGCAAAGTCTGAAATCAGTAAAGGAAATAATAGGAAGGTGAACGTCAGTGCtgttgacaatgatgacaatACCATGCATTTGATACCAATTAGTACTGATTCTGGAGAAACGGTTTACATTGCTGATAAGCAGAATAATACTTTGCACTTAATATCAAAACAGAATGAAAATTTGCCAGTTTTGGCAATACCAAATCCAGAAactgatgacaatttttctaaCGAAATATCGAATATCAGTAATAACGAGACGTCGATTGGAATTGATATCAATGATTTACAACCAACTCAAGAAGAAAGTGAAGAGGAGCACAACGAGACAATGATTATTGAACCTGTAACGATGATTAAAGAAGAAATTTCCGGAAATGAAAATATGACAAATGAaagtgatagtgatgatgaaagTGAAGAAATGGTGTGTGGCATATGTGGGCATGAATTCGGTGATAAAAATGTACTAATGGAAcatgtaaaaattcatatataa
- Protein Sequence
- METSEGEHYVTFTLDESIQNNVSHEEICEPADDECVLTEHINEVTVEEVSHEDLGETPLAVEIITENSEDGEEQGAYIYIKKEASQQFTTGDESMAVEALRQLGGMYCFEEKKIPCPTCKNTFAAGELAKHQSTCSSTKHICTFCREKFERKNDLTNHMVCHQVNRPHACRTCGNLFKSKASLQAHMMEVHQVDRPHKCSVCGADFQRPSSLSNHMKIHSYVAGRALMQANHVVASIETVKEVSESQDSPILTSVQSIQSIELPQGQWTAVEIATDQGDIEGLAIQQDKIDSVQEYAVLPTGEVAQLTEYTAQSAMEDDDENDEGDKTYIKIDIQENKGHTCNVCGVSFARAASLTMHLKTHPKSESASPVECEYCDKQFQDANCLANHQSGCTKKIMKNSGAKEKWGKHACSDCGKTFTTKQKMFRHQWIHRRKTFSCEVCGSQFEKQTQLDTHRLSSHPAGTPFTCQECGKSFVSRQGLWEHGRTHAGSPAHFHCDVCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCQKSFNQKVVLREHIRWVHAAGKNEPELTGPPFPCPLCEILTQDREELCAHIVKHSDQMIAEAKAKSNTLQGSSGSINLITIAKSEISKGNNRKVNVSAVDNDDNTMHLIPISTDSGETVYIADKQNNTLHLISKQNENLPVLAIPNPETDDNFSNEISNISNNETSIGIDINDLQPTQEESEEEHNETMIIEPVTMIKEEISGNENMTNESDSDDESEEMVCGICGHEFGDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -