Care013604.1
Basic Information
- Insect
- Copidosoma aretas
- Gene Symbol
- -
- Assembly
- GCA_030522625.1
- Location
- JAPYYV010013787.1:1340-5733[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.1 7.6e+02 2.0 0.7 2 23 314 335 313 335 0.90 2 16 0.09 13 7.5 1.6 2 23 381 402 381 402 0.94 3 16 7.9e-06 0.0012 20.3 1.2 1 23 503 525 503 525 0.99 4 16 0.0031 0.46 12.1 0.6 1 21 546 566 546 570 0.91 5 16 0.023 3.4 9.4 2.7 3 23 654 674 652 674 0.95 6 16 2.8e-05 0.0042 18.5 2.3 1 23 707 729 707 729 0.98 7 16 0.00056 0.083 14.4 1.3 1 20 734 753 734 755 0.94 8 16 0.0039 0.57 11.8 0.8 2 23 766 787 766 787 0.97 9 16 5.2e-05 0.0077 17.7 0.7 2 23 825 846 824 846 0.97 10 16 8.9e-05 0.013 17.0 2.1 1 23 851 873 851 873 0.94 11 16 9.6e-05 0.014 16.9 3.0 1 23 879 901 879 901 0.99 12 16 8.2e-06 0.0012 20.2 0.4 1 23 919 941 919 941 0.95 13 16 4e-07 5.9e-05 24.4 0.6 1 23 947 969 947 969 0.99 14 16 4.2e-05 0.0063 18.0 0.2 1 23 975 997 975 997 0.97 15 16 0.003 0.45 12.2 6.4 1 23 1003 1025 1003 1025 0.96 16 16 0.075 11 7.8 3.1 1 21 1031 1051 1031 1056 0.89
Sequence Information
- Coding Sequence
- ATGTCGTCACCTGTCGTTGGTGACATGTCGAAATTTGAGGGTGCAACTGCAGATCAGCAGGAAGTTTCTCGGATGGGCGTCTGCCGCGTGTGTCTTGTAGAAGGTGCCGCTATGAGGGGCCTATTTCAGAAAGACATCGTGCCGTCGCTCGCTGACAAGCTGATGGTTTTGGCGAGTGTTAAGatgCAGCCTGCTGATGGATTACCTTCACAAATATGTTGTGACTGTGGAGAAAAGCTGGATTTATCATACAAGTTCAAACTACAAGTAGAAGAGTCAGATGTGATTCTAAAGCAAAAATTAGACTCTTTTAACATAAaagaggaattatttttcaatgatgtaGATGTTAATTTGGCTCTTAACAAGAGTGTTGAAGTTATAATAGATGATGACATAGTTTTTCAAGCAGAACAAGCAGAAAATAGAATAAGTAAAACTGGGATAGAGGAATTTGAAGTAGAAAAACATGAAgatcaagaagaaaagtattcAGAGTCTATTGAAAATCAGGAAAATCAAGAGATGAAGAAAACTACAGAGGGTATGCAAGAGGTGCCGAAACAAGATCAAGAAGTGCAGCATGAATTCCAAGAAATAATCATGGGCGAACACAATCACCATAAAAAAATGCAAGAGGATTCAAGTCAAATTCAAAAAGCGGCAATACATGAGCATGATTACGTTGAATCGCAGTCGTGTAATAATATAAAGGATACTAATGGTGATGAAAATAAAACGGTTAAAGAGAAAGTTGGAGAAGACAATGTGCAGGAAGAACGTGTTTTCAATGAATCGATTCGAAGAAGTAAACGTAAATTAGTGCAGCAAAAATCTCTACCTCGCATATCTTCTGATGAGGAGagttactttgaaaatttaaacctCAGCTCTAGATTGAAAAGAGTTCAAtcagaaaaatctgaaaaagtatattttttatgttactgGTGTGATAAGCAATACTTGTCGAGAGAAATCTTAAGAGAGCATATGTTCTCTCACGAAGAAGTAAGAAAAACTCTCTCTTTAGTTGGTAAGTCCGCGGAAAAAACACAACAAAAAACACCAGAAAAATCGGCAAGCATAACAACTAGTCCTACTTCGATAAAACCACCATCAAGTGGAAAACAAGCTAATACTTGTCCTCACTGTGGAAAGGAGTATCTGTACATAATTTCGTATAAGAAACATTTGAAACAGcatagaaaagaaaagaaagctTCGAAAGAGATTTCAATGCCCCTGGAAGTTACTTTCCGTGAGAAAGAAGATGCTTTGGATTTTCATGGTTACGATGACACTTGTGCCATTGAATCTGATAGTGAAAATGAAGAAGTGAAGgcggaaaaagaagaaatatacataaaaacagaAATAGATATTCATTACGAGCATGAGGAAAAACAGGTTGAAAATGTTCTTACGAGACCGAAAGCAATGAAAGACTTGTCAGCAGTTGAAGGTACTAGCAAATCAGAGCAAAAAGTTGAATCGATTACAAAATACAGGTGCCTGTATTGTCCGTACACTTTTAAACAACAAAGAGCCTTAAATTTGCATCTTAAGATTCACAAAGAACATTACAATGTAGACGACAAAACTGAGGCGCCAGGCCGCTGTGAACCTAAAAGTTATTGCTGCAGTGAATGCGGCAAGAGTTTCGGTATGGAACTCACGCTTCGAAATCATTTAATTGCAACTGGCCATAAGACAACTGTTGAGGGTGAACAGTATGATTTAAGTAAGAGAATCAAAAGAGTAGCTGCTAAGGTTGCTCTTAAGGtcattgataaaatcaaaacgGATTTAAGTTTTGAAGACTCGGACGATGagagaattaataaaaatgacgcTAAGGACGCGGACTTTGACGAAGTCACGGAGAAACTGAAAATAAAAGCAAAACAAACGAATCCCGAGCCAATGGTGTCCAAAAAGATCTTTAAAGCGCTGTTTTGCGCCACTTGCAGCCAGAAGTGCTCGTCCAAGCAGGCCCTAATGAAACACATGGAACAACATGCAAGGGAAGATGATTCCGAAATAAAAGAAGATGCCGAAGACGGGGAAATAAAAGACGACGAGGATTATGGTATTGATGACTGGCCCATGGACACCTACGAATGCTCGACCTGCGAGAAAAAATACAGCACCAAGAAGTCGCTGTTGCGTCATCAGCTGCTGCACGAGGAACCTAACTTTGAGTGCGACATTTGTAATATAAAGTTTCATCGAAAGGACAAGCTCAAAGCCCACTATGACAAGTGCTCGGAAAAGAATCCAGACCAAGTGCGAAAGTGCAACATTTGCAACGACGTCTTCGAGAACAATGAGCTCTTGAAGGAACACCGTACCAAGCACGTGTCCGAGGGCATCCTCACGGAAGAAGACCTCGTGGAAATGGGCCCTAAATCCGAGGACAAGAGCGAAGACAAGGGAACCCGCAAGAGGCGCACCGACATTGTCGGCCTCGAATGCACCGAGTGCAACAAGCAGTACACCTCGAGAAAAGGACTTCTGCGGCACCTGCAGGTGCACGAGGGCAAAAAGTTCCTCTGCGACATGTGCCCAAAGAAGTTCTACAGGCGAGAACACCTCAAGATCCATGTGGCAAAGCACAACGTGGTCAAACCGTACAAGTGTCACAAGTGCCCAAAGCGCTTCATCAAAGACGAGCTGCTGAACAACCATCTGCTAAAGCACGACCGGATAACGAGGAAGCCGAAGGAGAGTTCGAGCGACGGCACGAAGCGCTTCCTCTGCGAAATCTGCTCCAAGAGCTTCACGCAATCAACAACCCTGGTCGCCCATCTGCGCGCCCACAACGGCATCAAGCCCTACGTCTGTGATGTCTGCTCGAGGCCCTTCACCACCAACGCCTATCTGAAAATGCACATGCGCACGCACACTCAGGAGCGTCCATACATCTGCCAGTACTGCTCGAGGGCCTTCGCCCGAGCCGACACCCTGGCCAACCACTTGACTTCCCATACGGGCGAGGCCAAGTACCACTGCAAGTTCTGCCCGAAGCACTTCAGGAGGCTCAAGTCCCTCAAGGAGCACGTCTTCATCCACACGGGTCAGCGGCCCTACGCCTGTCCCACCTGCGAtcgcaagtttaataataacgGCAGCAGGTACGCGCACAGCAAGCGTTGCAAACAGCATAACGGGCAGGCCTCCCTGGCGCAGGAGTCGGAGGAACAAGTCGCGATGGAGACCGAGGAGCAGGATagggaggacgaggaggaggaggaggaagaggaagtGGCCCAGCTGGAGCTGATCGACCAGGCGGACATGCAGACGGGCCAGGTGGTGCAGAGGATTGGCGCGGTTACCGCGGCGAGCGGGCAGATCATCAAGCCGCAGAGCATCAAGACCATAACTCTGGCGAGGCCCGTCGATGGTGCGCTCGGGCAGCAGCATGTCGTGGGACAGGAGATACTTATGCCCTTGATACTGCCGTTCACGGTCACGCTCGGCGACGAGGTTATTCTGTCCGAGAATACGAAGATCTTCACAACATAG
- Protein Sequence
- MSSPVVGDMSKFEGATADQQEVSRMGVCRVCLVEGAAMRGLFQKDIVPSLADKLMVLASVKMQPADGLPSQICCDCGEKLDLSYKFKLQVEESDVILKQKLDSFNIKEELFFNDVDVNLALNKSVEVIIDDDIVFQAEQAENRISKTGIEEFEVEKHEDQEEKYSESIENQENQEMKKTTEGMQEVPKQDQEVQHEFQEIIMGEHNHHKKMQEDSSQIQKAAIHEHDYVESQSCNNIKDTNGDENKTVKEKVGEDNVQEERVFNESIRRSKRKLVQQKSLPRISSDEESYFENLNLSSRLKRVQSEKSEKVYFLCYWCDKQYLSREILREHMFSHEEVRKTLSLVGKSAEKTQQKTPEKSASITTSPTSIKPPSSGKQANTCPHCGKEYLYIISYKKHLKQHRKEKKASKEISMPLEVTFREKEDALDFHGYDDTCAIESDSENEEVKAEKEEIYIKTEIDIHYEHEEKQVENVLTRPKAMKDLSAVEGTSKSEQKVESITKYRCLYCPYTFKQQRALNLHLKIHKEHYNVDDKTEAPGRCEPKSYCCSECGKSFGMELTLRNHLIATGHKTTVEGEQYDLSKRIKRVAAKVALKVIDKIKTDLSFEDSDDERINKNDAKDADFDEVTEKLKIKAKQTNPEPMVSKKIFKALFCATCSQKCSSKQALMKHMEQHAREDDSEIKEDAEDGEIKDDEDYGIDDWPMDTYECSTCEKKYSTKKSLLRHQLLHEEPNFECDICNIKFHRKDKLKAHYDKCSEKNPDQVRKCNICNDVFENNELLKEHRTKHVSEGILTEEDLVEMGPKSEDKSEDKGTRKRRTDIVGLECTECNKQYTSRKGLLRHLQVHEGKKFLCDMCPKKFYRREHLKIHVAKHNVVKPYKCHKCPKRFIKDELLNNHLLKHDRITRKPKESSSDGTKRFLCEICSKSFTQSTTLVAHLRAHNGIKPYVCDVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKFCPKHFRRLKSLKEHVFIHTGQRPYACPTCDRKFNNNGSRYAHSKRCKQHNGQASLAQESEEQVAMETEEQDREDEEEEEEEEVAQLELIDQADMQTGQVVQRIGAVTAASGQIIKPQSIKTITLARPVDGALGQQHVVGQEILMPLILPFTVTLGDEVILSENTKIFTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -