Basic Information

Insect: Copidosoma aretas
Gene Symbol: SCRT1
Assembly: GCA_030522625.1
Location: JAPYYV010002285.1:7481-10563[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0015 0.23 13.1 0.4 1 23 288 310 288 310 0.92

2 12 7e-05 0.01 17.3 1.2 1 23 318 340 318 340 0.98

3 12 7.1e-06 0.0011 20.4 0.3 2 23 348 369 347 369 0.97

4 12 0.0016 0.24 13.0 2.4 1 23 375 397 375 397 0.98

5 12 1.9e-05 0.0028 19.1 1.6 1 23 404 426 404 426 0.99

6 12 2.5e-05 0.0037 18.7 0.2 1 23 432 454 432 454 0.96

7 12 1.9e-05 0.0028 19.1 0.2 1 23 460 482 460 482 0.98

8 12 7.3e-07 0.00011 23.5 1.2 1 23 488 511 488 511 0.96

9 12 3.8e-06 0.00056 21.3 0.5 1 23 517 540 517 540 0.96

10 12 1.6e-06 0.00024 22.4 2.2 1 23 546 568 546 568 0.99

11 12 9.4e-05 0.014 16.9 0.4 1 23 574 596 574 596 0.94

12 12 0.0019 0.28 12.8 0.1 1 23 602 626 602 626 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0015	0.23	13.1	0.4	1	23	288	310	288	310	0.92
2	12	7e-05	0.01	17.3	1.2	1	23	318	340	318	340	0.98
3	12	7.1e-06	0.0011	20.4	0.3	2	23	348	369	347	369	0.97
4	12	0.0016	0.24	13.0	2.4	1	23	375	397	375	397	0.98
5	12	1.9e-05	0.0028	19.1	1.6	1	23	404	426	404	426	0.99
6	12	2.5e-05	0.0037	18.7	0.2	1	23	432	454	432	454	0.96
7	12	1.9e-05	0.0028	19.1	0.2	1	23	460	482	460	482	0.98
8	12	7.3e-07	0.00011	23.5	1.2	1	23	488	511	488	511	0.96
9	12	3.8e-06	0.00056	21.3	0.5	1	23	517	540	517	540	0.96
10	12	1.6e-06	0.00024	22.4	2.2	1	23	546	568	546	568	0.99
11	12	9.4e-05	0.014	16.9	0.4	1	23	574	596	574	596	0.94
12	12	0.0019	0.28	12.8	0.1	1	23	602	626	602	626	0.92

Sequence Information

Coding Sequence: ATGCCGGAGGGACATGAAAAATTCAAGCACAACTGTCTACTTTGCAATGGCAAGCTTGGAGCTGCATCTAGAAATAGCATCAGTATTTTTGGAGAAAATGCTCTTACAAGTTCAGCAAATTCTATTGTGGACGTTCTGTTCGACATTTTGCAACGATCTATCAACAAAGAAAGTTCTCATTCCTCGGtgatgtgtaaaaagtgtttaaagCTTGTGAATGAAGTTGATGAATTAAACAGCAGGATAAAAGAGTTGAAGCAAGAAATTTGTAGTTCATTTAAGAAAACATTAGATAGAGTATTGGATATTAATACCAAAAATGAATCCATAGATCATGATTGCATTGAGAAAGTAGAAAATTTGGAAACATTGCCAGTAGTCAAGTTGGAAAAGTTTACAGAtacgaaaaagaaagaaaaaaaacttgcgCTTTCAGAGCCTATAGAAGACATTATAGAAAAAGTAGTGAAAGACAATGGAGAACAAATAAAATCTTCTGATAAACAGAAAGAGAATAATGAACAcctcgaaaatatttttgatggtaatgataacgattttagtaatgatttacgcaacaatgatgatgatgatgacgacgatgatgatgatgatgaggatgaaggAAATGTTGGAAACAATGCAGATGCTGATTTTTCCAATAGTGGAGGAGGGTTTGAAGAAGTTTTGgttgatgaaaaaagttttaagaaagtaataaaaaaggagaaaatagaAGATATTTCTGagTTGGCTGTGAAGTTAGAAGATAGTTATAAATGTATCAAGTGCAAAAGCGACGAAAAAAGAGACGCTAAAGATATTATTGcccatttaaaaaatgaacatgaCGCACGGTTGTACATATGTGATGTCTGTGGAGAAATGTTTACCAAGAGAACAGTTTTATCAAAGCACTTTGATGAGCACTGCGCAAACGAAGCGGGCGATTTCCAGTGCGAAGTTTGCAATCGAATATTCAACAATTTGCGGCTTTTCCGCATTCACAAACGTATTCATTATCCACAAATAAAATCATGGTCGTGTGATGTTTGTGGCAAACGCTACAGCTCTAAAAATTTGCTGGACGAGCACATGAATACTCATACTGGAAACCGTCCATACGTTTGTCAAGTATGTAATAAAGATTTTGCATCCAAATATACACACCGTGCACATGTAAAAACTCATGAAGTTAGACCGAGGCCTTACAAGTGCACTAAATGCCCTAAAACTTTCCTCAGTCAACAAAATCTAGCTCAGCATGTAAAAACGCATAATGGCGTAAAAGATTTCGTTTGTTCAACCTGCGggAAAGCATTTGGTTCAGCACACAATTTGGAAGTTCACAACATTGTTCACACGGGTTACAAACCATATATTTGTCGTACGTGTGGCAAAGCATTCGCGCGTAAAGCAGAGATTCGCGATCATGAAAGAACACATACAGGCGAAAAGCCATACCAATGTGAATTTTGTGGCGCTACCTTCAGccAAAGATCAAATCTGCAGTCTCACAAAAGAGCGACTCATTACAACGACAAAAGATACAAGTGTGACGACTGTGGAAAAGGTTTTAAAAGGAGAAGGTTGTTGGATTACCATATTAAGGCTGCTCATACTGGAGAACGACCGTACAAATGTCCGACATGCTCTGCAACGTTTGTTTATCCAGAGCACTTTAAAAAACACATGCGCATTCATACAGGAGAAAAGCCTTATTTGTGCGAGGTTTGTGGAAAAGCCTTCAACAGTAGAGATAATCGCAATGCTCATAGGTTTATTCATAGCGACAAAAAGCCTTACGAATGTTTAGTTTGTGGTGCAGGATTCATGCGAAAGCCATTGTTATATTCCCACATGCAATCACAAGGGCATTTGAATGATACTATCGTTGTCAATCAGCCAAGACTGACCACGGAAGATGAGATGATACTTCAGGACAATAGAGTCCACTTAGTTATGCAGGGCGATGAAAGTCAGtCGAGCGAAAACACACAGTTGATTCTTGCTGAACTGAAGGACAACCAAGTAATAATCCAGGATGGATATagacaaaaaattgtgaatttggCACAAACAAATGTTAATCGCGATGAGCTGAGCCAACTTGTTGTCGATGGAGAGatGTCCTTTGAGGAAGAAGGAGATTCCAATACAATGAAGTGTGAAGACGAGGAAGAGAACGAAAATATGGATGAAGTTTATGGCTACCAGGACGACGAGGGCAACACCGTTATTTTGCCACGGAACACCGACATCAAACAGCTTCTCGCACAGGATAGTAAAGGACTACAATTAGTGCAGATCCGCGTACCAACTGGAAGTAATATCGAGGGTAGGAACTGGCTGAACATGTTACAAAGTTCTTGA
Protein Sequence: MPEGHEKFKHNCLLCNGKLGAASRNSISIFGENALTSSANSIVDVLFDILQRSINKESSHSSVMCKKCLKLVNEVDELNSRIKELKQEICSSFKKTLDRVLDINTKNESIDHDCIEKVENLETLPVVKLEKFTDTKKKEKKLALSEPIEDIIEKVVKDNGEQIKSSDKQKENNEHLENIFDGNDNDFSNDLRNNDDDDDDDDDDDEDEGNVGNNADADFSNSGGGFEEVLVDEKSFKKVIKKEKIEDISELAVKLEDSYKCIKCKSDEKRDAKDIIAHLKNEHDARLYICDVCGEMFTKRTVLSKHFDEHCANEAGDFQCEVCNRIFNNLRLFRIHKRIHYPQIKSWSCDVCGKRYSSKNLLDEHMNTHTGNRPYVCQVCNKDFASKYTHRAHVKTHEVRPRPYKCTKCPKTFLSQQNLAQHVKTHNGVKDFVCSTCGKAFGSAHNLEVHNIVHTGYKPYICRTCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCPTCSATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGAGFMRKPLLYSHMQSQGHLNDTIVVNQPRLTTEDEMILQDNRVHLVMQGDESQSSENTQLILAELKDNQVIIQDGYRQKIVNLAQTNVNRDELSQLVVDGEMSFEEEGDSNTMKCEDEEENENMDEVYGYQDDEGNTVILPRNTDIKQLLAQDSKGLQLVQIRVPTGSNIEGRNWLNMLQSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -