Care014707.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Copidosoma aretas
Gene Symbol
-
Assembly
GCA_030522625.1
Location
JAPYYV010015659.1:604-8569[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 37 0.00056 0.083 14.4 0.1 1 20 79 98 79 99 0.96
2 37 0.0071 1.1 11.0 0.4 1 21 117 137 117 138 0.95
3 37 0.0012 0.18 13.4 1.2 3 23 181 202 181 202 0.97
4 37 0.012 1.8 10.2 0.5 2 23 207 229 206 229 0.94
5 37 0.047 6.9 8.4 1.4 3 23 237 257 236 257 0.95
6 37 4.6e-05 0.0068 17.9 2.6 2 23 265 287 264 287 0.92
7 37 0.043 6.4 8.5 5.5 1 23 296 318 296 318 0.98
8 37 0.17 25 6.6 0.3 2 23 325 345 324 345 0.95
9 37 0.0053 0.78 11.4 0.2 3 23 353 373 351 373 0.96
10 37 2.5e-05 0.0037 18.7 3.8 1 23 379 401 379 402 0.96
11 37 0.15 22 6.8 2.9 2 23 567 588 566 588 0.96
12 37 4.3e-05 0.0063 18.0 0.8 2 23 622 643 621 643 0.97
13 37 0.014 2 10.1 4.3 1 23 664 687 659 687 0.93
14 37 0.061 9.1 8.0 3.0 1 23 695 717 695 717 0.98
15 37 0.11 16 7.3 0.0 2 23 724 744 723 744 0.94
16 37 1.3e-06 0.0002 22.7 1.1 1 23 750 772 750 772 0.96
17 37 0.0036 0.54 11.9 0.3 3 20 780 797 778 799 0.94
18 37 0.17 25 6.6 0.6 1 23 885 908 885 908 0.91
19 37 0.00025 0.037 15.6 2.4 1 23 913 935 913 935 0.98
20 37 0.98 1.5e+02 4.2 0.8 2 23 947 969 946 969 0.74
21 37 0.00093 0.14 13.8 5.8 1 23 973 995 973 995 0.98
22 37 0.017 2.5 9.8 0.1 1 23 1000 1022 1000 1022 0.97
23 37 2.1e-05 0.0031 18.9 2.1 1 23 1027 1049 1027 1049 0.98
24 37 2.1 3.1e+02 3.2 5.2 1 23 1055 1078 1055 1078 0.92
25 37 1.9e-05 0.0029 19.0 0.5 2 23 1091 1112 1090 1112 0.95
26 37 1.1e-05 0.0016 19.8 1.8 3 23 1121 1141 1120 1141 0.99
27 37 3.2e-06 0.00047 21.5 0.1 1 23 1147 1169 1147 1169 0.98
28 37 1.3e-06 0.0002 22.7 0.3 1 23 1175 1197 1175 1197 0.98
29 37 0.0018 0.27 12.8 4.4 1 21 1203 1223 1203 1224 0.95
30 37 0.0049 0.73 11.5 0.2 2 23 1257 1279 1256 1279 0.95
31 37 0.0044 0.66 11.6 4.2 1 23 1283 1305 1283 1305 0.99
32 37 0.0031 0.46 12.1 1.4 1 23 1310 1333 1310 1333 0.94
33 37 0.0048 0.7 11.5 1.1 3 23 1342 1363 1340 1363 0.95
34 37 0.00024 0.036 15.6 1.6 1 23 1402 1424 1402 1424 0.98
35 37 0.003 0.44 12.2 0.2 1 23 1428 1450 1428 1450 0.97
36 37 0.0084 1.2 10.7 3.5 3 23 1456 1476 1454 1476 0.96
37 37 1.1e-05 0.0017 19.8 3.3 1 23 1482 1504 1482 1504 0.99

Sequence Information

Coding Sequence
ATGCGAGTACCGGTGATCCTACAGCGCAAAAGAAAGGCCGAGCGCACCCCGAGTCCAAAAGCGCCGCCCACGCTAGGCGTAATGcccagcagcaacagcagccgGGGCATCGAGTCCGTCCTGACGGATCTCGATAGAGAGCGCCGCGTCTTTCTCGTCCCGCCAAGCGCCTCCTCGACAGACCCCGCCACCGACGACAAAGCCAGAAGGCCCTTAAAAAGTGAGGCGAGCACGTACCAGTGCGACTCGTGCGACGAGAGCTTCGACAGCCAGTCGGCCCTCATAGTCCACAAGACCGAGCGGTCGATCGTCCGCACGAGAGCGGCCCTCCGGGAGCCCATCGTCAAATACTCCTGCGACATCTGCCACCGGGCGTTCAATGCCAAGGGCGTGCTCCTCCGCCACTACAAGAACTGCGGCGCCGTCGAGCTCGACTTACTGCCCAAGGCCACGGCTACGATCCAGCGCAAGCAACGCCGCAGGTCGCCCCAGCCCAAACCTGCCGTTGACAGCGAGACCGGGGAGGAAAAGCCCGTAGGCTGTGGAAAGTGCAACAAGGTCTTCAAGAAGTACAAGTACCTGCGCGTCCACGAGTCCACGGCCCACGGTGAGCAGGTGGTCTGCCAGCTGTGCAAGCTAATGCTTAATTCAAAGGCCGAACTGAAGAAGCATTTGAAGGAGAAACACACGGACGACTACACCGAGTTTTGCGGTATCTGCAACAAAGGCTTTCACCTTCGGCAGTCGCTCAAGGTCCACCTGACGGCGCACGCGCGCGACGACAAGCCCTGCGTCTGCGAGCAGTGCGGCAAGGAGTTTCGACACGAGTCCTACCTGCGCAAGCACGTCCAGGCCGTTCACGTGGAGATGCGGGAGCGCAAGAAATACGAGTGCGACATTTGCGGCTACGTGACCCACTACAAGACCTGCTTCCGCGAACACATGTACAAGCACACGGGCGAGGACCAGGTCGTATGCGAGCTGTGCGGTAAGAGCATGCGCCGAAGTTACATCAAGATCCACAAGAGGATCCACAGCGGCGAGAAGCCGATAATCTGCGAGTTTTGTGGCAAGGCCTTTACCGCCGGCAAGTATCTGTCCAAGCACCGAGTCACCCACACCGGGGAAAAGCCCTACCAATGTCAGATCTGCGGGAAAAAGTACACCCAGCGTGGCACCCTCACCCTGCACTTTCGCAATCACCATCCCCTGGACACTGCCCCGACCAAGAGGCAGCTGGCCAAGGCTGCTGCTAcggctgctgcagctgctgctgctgctgctgctgctactgcggCTACTGCGGCTTCGCTCGAGGAGAAAAGTGCTGTCTTGAAGCTGGAGGGGGATCCGAGGGTGCACGTGGTCAGCGAGGACGGGACGCTCGTCGAGATAATAAGACTGAACGAGGGGGACGAGGTGTTCGAGGAGATCGTCATAGGGAACGTGGAGAGAGAGGAGGGCGAGGTAACGGAGGAGGATATTAAAGTCTTCCAGGAGGACGAGGTAAAGATAGAGGCGGAGGACTGCAAGCTCGTCATCAACGACGTGGACGTCGTTGAGGAGGAGCTCGCCCTGTCCCGTCACCGGCTGGCGCCCACTGCGACCGCGTCCGCTCCAACTGCCCCGAGTGCCGCGAGGTGCGAGGCAACCAACGAGGCACCCGGTCGTCCACGTCCCCGGCCGAAGCAGAGGCTCAAGTGCCACCACTGCTCGCGACTCTACGTCTCGAAGCTCGTGCTCGCGCGCCACATCGACAGACACGCCGGCCGTAGCGTGGACTGCAAGCTCTGCGGCGAGGCCCACTGGTCCCGGGACAGTCTCGACCGGCACCTGAGCACCCGCCATCCGGATCTGAGCTCGTCCTGCGCCCACTGCGGCCGGGCCTTTGCCAGCGAGCGTAGTCTCAAGATGCATCTCAGGGTCCACGGGGAGAAGCCGTTCGCCGGTACGACAGGCCGTGTCTACGAGCACTACAAGTGCACCGAGCACACGTGCCTGGTCTGCTCGGCTACCTTCAAGTCGCTCTACTATCTCAAGGCCCACGAGAGACAGAAGCACGGGGACCAGCAGCGGGTCTTGTACCAGTGCGACAGGTGCGACTTTGCCACCTGTTACAGGACGAACGCGCTTAAACACCAGCGCGGCCACACCGGCGAGAACACCGTGCAGTGCGAGATCTGTGGCAAAGCGATGGACAGATCCTACCTGGCGGCGCACGCGGCCATGCACAGCGGCGTGAAGCCGCACGCGTGCCTCGTCTGCGGCAAGAGTTTCACTGTCGCCAAGTATCTGAAGGTCCACATGCGCACCCACACCGGGGAGAAGCCCTTTGGGTGCAAGGTCTGCGGAAAATGGTTCAGCCAAAAGACGTCGCTCAACACCCacctgctgctgttgctgctggtgGGAAGAAACTTGTGTCCCTTGGTTCCCTTGGTCACTATCCACCGCCAGCCGTTTATGCCGATCCTACTAATGGGCCTCGCTGTCGTAGGCGATCAGTCTTCGCAGAGCGTGCCCGTGATAACTAAGAAAAAGCAGCAGATGCTCAAACTCGAAAGCCCTCCGCTGGTAAAACCCAAGCAAGAGAACCCCACGAGCGCcgaccacgacgacgacgacgacgacgacgacgacctcCCGCTCGCCTATTTCTGCAAGCCCTGCTCGAAACTCTTTGCGTCCCAGAAGCTCCTCAACGACCACCGAGCACAAGCTCACCCGCGCAGGCGCTACGAGTGCGCCCACTGCGGCAAGGTCCGCGACTCCCGGCGAAACATGCGCCGGCACCTGAATCGCCACGGCGACGACGATCCGCCGCCCCTCGTCTTTGTCACGTGCGAGACTTGCGGGGCGAAGTTCAAGAACCACGGCGAGGAGTACCAGAGGCACCTGCAGGACCACGTCGACAAGTACGCCTGCAAGCACTGCTCGCGGCGCTTCCGTCTGCTCCGGGACCTCAAGCGCCACAAGAAGACCCACTTTTTACCGAGCTTCACGTGCGACGTGTGCGGCTACGAGACGACGGTCTTCACGGCCCTCAGGATCCACGTGGCTTCGCACGCGAAGCGGTCCTTCAAGTGCAGCGAGTGCGACAGGCGCTTCCACCGTGCCGCCCAACTCCAGGAACACTACAACGTCCACGCGAACGAAAAACCGTTCGCTTGCAAGCTCTGCTCGCGCGCGTTCCACCTGCGCAAGCAGCTCTCGGCCCATTGCAGGAGCAGGCATCCCAAGCTGCGCAGAAAGTCGGGGAACAATAGTACAACGTGCAGCATATGCGGCCGGGTCCTGTCGACCAAGTCCTCGCTGCGTCGTCACGAGGCGAGTCACAACCCGACGAAGACCGATAATCTTTGCGACATTTGTGGCAAGAGCTCCGCGAGTAGGGATCACCTCAAAAGGCACAGGAGGATTCACACGGGGGAAAAGCCCTACGTGTGCGAGGCCTGTGGCAAGGGGTTCGCGAATTCGGAGAATTTAAAAATGCACAGACGCGTCCATACGGGCGAAAAGCCGTACGTCTGCGATCTGTGTCCCAAAGCGTTTAGTCAGAGGTCAACGCTAACCATACACAGGCGCGGCCACACGGGCGAAAAGCCATACCACTGTAAGTTCTGCGGCAAGAGCTTCACGTGCCAGGGGAACCTCACGGTGCACCAGAAGAATTGTGACTACCTGACCAAGGAGTACCAACAACCTGAGAAACGCAGACGCCGGCGCAGCCGTCACCAGATAAAGGACGAGCTGGACGAGCTCCGGGACACCTGTCCCATCTGCCAGAAGCGCTTCGCCGACTACCGGCGCGTCGCCAACCATGTACGCAACGTACACCGCAAGCCCTTCAAGTGCGACCTTTGTCGCAGGCAGTTCTTCAGCCAGAAGACCCTCGACAATCATCGCAAAACCCACGGTGGCTCGCACTTTGAGTGTAGCGTCTGCCACCTGAAGTACAAGCGCGAGGAGACCCTGATGGCCCATTATGTGCGCCTGCACAGCGACATCGAGGCCAACTTTGGCTGCGACCACTGCGGCAAGCGGTACAAGCTCAAGCAGGACCTGCTGCTGCACGTGCAGCAGGTACACATGTGCCCCTATCAGATCTGTCGGTTCTGCGGCAAGACCGTTAAAAACGTCAAGGCCCACGAGTGGAACCACGAGAACAAGATCCGACTGGCCGAGCAGGGGGGCAAGGAGCTCTATCCGTGCAGCCTCTGCTTCAAGCAGTTCCGGACCGAGACGAAGCTCGAGAACCACCTGATGCGCCACGTCCAGACCTACGAGTGCGACAAGTGCGGCGAGACGTTTTTGGGCCCTGGGCAGCTCATGAACCACAAGTCGAAGCACAGGCCCGGGGTCAACTGCTTCTTCTGCCAAAAGTTCTTCTCGTCGCACAGCAACTATTACCAGCACGTGCTCATGCACGCCAAGGTGCGCCCGTACAAGTGCGGACTCTGCGAGGAGACCTTCACCCAGCGCTCGACCCTCGTCAGGCACCACAAGACCCACGCCGAGCCGGTGCCGGATGATTTTGAGCAGGTGCCGATCGCCTATCTGGCGAGAAAGGTGCTCAAGAGTTTCCACGACATGTCGCCGAGCGAGGCCCGCGAGAAGCTCGCCTACGTCGCCGACTCCCTGTGA
Protein Sequence
MRVPVILQRKRKAERTPSPKAPPTLGVMPSSNSSRGIESVLTDLDRERRVFLVPPSASSTDPATDDKARRPLKSEASTYQCDSCDESFDSQSALIVHKTERSIVRTRAALREPIVKYSCDICHRAFNAKGVLLRHYKNCGAVELDLLPKATATIQRKQRRRSPQPKPAVDSETGEEKPVGCGKCNKVFKKYKYLRVHESTAHGEQVVCQLCKLMLNSKAELKKHLKEKHTDDYTEFCGICNKGFHLRQSLKVHLTAHARDDKPCVCEQCGKEFRHESYLRKHVQAVHVEMRERKKYECDICGYVTHYKTCFREHMYKHTGEDQVVCELCGKSMRRSYIKIHKRIHSGEKPIICEFCGKAFTAGKYLSKHRVTHTGEKPYQCQICGKKYTQRGTLTLHFRNHHPLDTAPTKRQLAKAAATAAAAAAAAAAATAATAASLEEKSAVLKLEGDPRVHVVSEDGTLVEIIRLNEGDEVFEEIVIGNVEREEGEVTEEDIKVFQEDEVKIEAEDCKLVINDVDVVEEELALSRHRLAPTATASAPTAPSAARCEATNEAPGRPRPRPKQRLKCHHCSRLYVSKLVLARHIDRHAGRSVDCKLCGEAHWSRDSLDRHLSTRHPDLSSSCAHCGRAFASERSLKMHLRVHGEKPFAGTTGRVYEHYKCTEHTCLVCSATFKSLYYLKAHERQKHGDQQRVLYQCDRCDFATCYRTNALKHQRGHTGENTVQCEICGKAMDRSYLAAHAAMHSGVKPHACLVCGKSFTVAKYLKVHMRTHTGEKPFGCKVCGKWFSQKTSLNTHLLLLLLVGRNLCPLVPLVTIHRQPFMPILLMGLAVVGDQSSQSVPVITKKKQQMLKLESPPLVKPKQENPTSADHDDDDDDDDDLPLAYFCKPCSKLFASQKLLNDHRAQAHPRRRYECAHCGKVRDSRRNMRRHLNRHGDDDPPPLVFVTCETCGAKFKNHGEEYQRHLQDHVDKYACKHCSRRFRLLRDLKRHKKTHFLPSFTCDVCGYETTVFTALRIHVASHAKRSFKCSECDRRFHRAAQLQEHYNVHANEKPFACKLCSRAFHLRKQLSAHCRSRHPKLRRKSGNNSTTCSICGRVLSTKSSLRRHEASHNPTKTDNLCDICGKSSASRDHLKRHRRIHTGEKPYVCEACGKGFANSENLKMHRRVHTGEKPYVCDLCPKAFSQRSTLTIHRRGHTGEKPYHCKFCGKSFTCQGNLTVHQKNCDYLTKEYQQPEKRRRRRSRHQIKDELDELRDTCPICQKRFADYRRVANHVRNVHRKPFKCDLCRRQFFSQKTLDNHRKTHGGSHFECSVCHLKYKREETLMAHYVRLHSDIEANFGCDHCGKRYKLKQDLLLHVQQVHMCPYQICRFCGKTVKNVKAHEWNHENKIRLAEQGGKELYPCSLCFKQFRTETKLENHLMRHVQTYECDKCGETFLGPGQLMNHKSKHRPGVNCFFCQKFFSSHSNYYQHVLMHAKVRPYKCGLCEETFTQRSTLVRHHKTHAEPVPDDFEQVPIAYLARKVLKSFHDMSPSEAREKLAYVADSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-