Care028493.1
Basic Information
- Insect
- Copidosoma aretas
- Gene Symbol
- -
- Assembly
- GCA_030522625.1
- Location
- JAPYYV010057292.1:1-4343[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-10 1.6e-07 32.0 0.0 1 39 409 448 409 452 0.90 2 3 1.2e-11 1.9e-08 34.9 0.0 2 39 464 501 463 504 0.94 3 3 6.5e-13 1e-09 39.0 0.0 1 32 518 549 518 549 0.97
Sequence Information
- Coding Sequence
- TCGCTCCTGAAAACGGCCGACCAGCTGAAGATAAAGGGCCTGTGCGAGGTGCCGGAGAGCCGCGACTGCGCAGGCGGACCGGGGcccggagcagcagcagcatcgtcCCTCGGGGGCCTGTTGGccgaggagggggaggagggccaggaggaggacgaggacgaCCCCTCGGTGGCCCCGAGCCTGGGCTCCTCGCCGGGCCGCGGCGGTGACCACCAGACGAGCGCGCCCCATCATCAGCACCGGCTCGGCTACGCGAGGCTACTCAAGCGCCACCGTCACCCGCGCTACAAGAGGCCGCGCGCGTCGTACGACGCGGCCGGGCACAGAGCGACCAACACGGATCATCACCGCGGCCATCTGTtcttgcagcagcagcagcagcatcgggCCCATCACAATCATCCGCAGCGTCGCGCCAAGTACAGGGAGGAGGACTTTGCCGAGAGCTACGTGAGGGACTGCGACAAGGAGAACCGCCGAGACTGCTGGCCGGCCGAAGATGACGATTGCATGGAGACGACAGCGCCGAGCAGTACCAACACAGCGGTCCCAGCCACAGGAGTCCCAGCCACGGCAGTAGTCCTGGACTCGTGTCAGCGTAACAGCAGCGCCGGCGCTGTTGGCGGCGCGGGGGGTGCCGACgctggaggaggaggaggaggaggaacggGCCTCGTTGGTGCCGGCGGTGccgacaacaacaacagcaacaacagcaacggcGTCAACGCTACCGGCGGTCCCGCCAACGGCAGCggcaacgacaacaacaacactGCCACGGCGGCGAACAACAACGGTGACGACATGTTCTGTCACACAGGTCTCGGCCACTACGGCCACCACCCGGACCCGGCCGAGGTCGATCTGCCGCCCGAGACGCAGCCGACGCCGCCGAGCGCGACCCTCGTCGGGACCACCATTACCCATCTGAGGGACGCGGAGCATCAGACGGCAGACATCCAGAGCTGCGACAGCGTCAAGATAAAGTTCGAGACGCTGCACACGATGGACTCGTCGGACACGATCGACATAGACAGCCACATGTCCGACCGGGCGAGCGTGAGCTCGAAGAACGCCGACGacaacatgatgatgataacccCCGAGCTGCTCGGCCTCATGCCCTCGGGCAGCTCGGTCCACTCGGACTCGGGCGAGAACAACTCGCGCAGTCTGTCGGGCCAGTCGGCCGGCCACCATCACGGCTCCAAGTCCTGGACGCAGGAGGACATGGAGGGGGCCCTCGACGCCCTCAGGAACCACGACATGAGCCTCACCAAGGCGTCCGCGACCTTCGGCATACCATCGACGACGCTCTGGCAGCGGGCGCACCGGCTGGGCATCGACACGCCCAAAAAGGACGGGCCGACCAAGTCGTGGAGCGACGAGAGCTTGAACAACGCCCTGGACGCCCTGCGGACGGGCACCATATCGGCCAACAAGGCGTCCAAGGCTTTCGGCATACCCTCGAGCACCCTGTACAAAATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCCTTCAACGCGAGCCCGACCACCTGGACGCCGGCCGATTTGGATCGCGCCCTCGAGGCCATACGCTCGGGCCAGACTTCGGTGCAGCGCGCCTCGACCGAGTTCGGCATACCCACGGGCACGC
- Protein Sequence
- SLLKTADQLKIKGLCEVPESRDCAGGPGPGAAAASSLGGLLAEEGEEGQEEDEDDPSVAPSLGSSPGRGGDHQTSAPHHQHRLGYARLLKRHRHPRYKRPRASYDAAGHRATNTDHHRGHLFLQQQQQHRAHHNHPQRRAKYREEDFAESYVRDCDKENRRDCWPAEDDDCMETTAPSSTNTAVPATGVPATAVVLDSCQRNSSAGAVGGAGGADAGGGGGGGTGLVGAGGADNNNSNNSNGVNATGGPANGSGNDNNNTATAANNNGDDMFCHTGLGHYGHHPDPAEVDLPPETQPTPPSATLVGTTITHLRDAEHQTADIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSLSGQSAGHHHGSKSWTQEDMEGALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -