Care016890.1
Basic Information
- Insect
- Copidosoma aretas
- Gene Symbol
- bab2
- Assembly
- GCA_030522625.1
- Location
- JAPYYV010019700.1:5502-7692[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.4e-11 1e-07 32.6 0.0 2 38 224 259 223 264 0.90 2 4 2.9e-13 4.7e-10 40.1 0.0 3 38 275 309 273 314 0.91 3 4 0.0037 6.1 7.7 0.0 8 35 332 358 330 365 0.77 4 4 3.1e-11 5e-08 33.6 0.1 3 39 387 423 385 426 0.92
Sequence Information
- Coding Sequence
- ATGGGTCCGGGTGGTAAGAGGGATGAGCTCGGAAAACAACCACAAGTGACGTTGCTGTCAATTACAGAGAATATCACCGATGACGGCGAGCCCAACAACTATGTCAAAAGCGAGGACTACGGCAACCAATTCACCGGGGTCGTGCGTGAGCTCTTCCTCGATGAATCCATGCTCGACGTTACCCTCTGCGTCAATGGGTGCAAGATCCGCGCCCATCGCATGGTCCTCGCTGCTTGCAGCACACTTTTTCAGGAGCTTTTGTGCAAAAGTAGCGAAGAGCAGACTCTTTTTATACCTGACGTGAACTTGGAGCATCTTCAGGCTATCGTCTCGTTCTGTTACAATGGAGAGATCAGAGTCCCTTCAACAGAAATCACTGACATGTTAGAACTGGCTCAGTATTTGAAGATTGAGGGTCTAAGAGAAGTTGCTGGTCTAGTAGAATCAGAAACATCCAATGATCAAGTTGAAGATGAAGAATCGTACGTTCTTCAGGAATCTAATTTTATGGAGGATGACGATTCAGAAGGTATGGAGGAAGTGACCATCGTCAGTACCCCAAAGaataataaagttgaaaaaagaaataatatttcgcATTCGAATAATGTTCAAAGTTTAAACAGCattggaaaaagaagaaaaagcgTTTGCAAAAGAGAATATTCTGATGACCAACTAGCTGCTGCCATCAAAGATATATGTTCAGGTTGCTCGTTGTTAGAGGCagctacaaaatttaaaattcctaGGTCTACATTGTATATGCGAGCCAAAACCTTGGGTGTGAAAATAAATAACACCAAATTTATCTACACCATTGAAGATATGAAAGATGCAATTCAAGCAGTATCAGAAGGATGTAGTCTTCAACAAGCTGCTGACATTCATGGAATACCAAAAACCGTTTTGTGGAGGAGGATGCAAAAAGAAGGTGTTCAGATACCTAGACGCGATAACAAGAAATCTTATGCTAGTGAAAGGCGAGAGGCTGCTGTAAAAGCTTTGGAAAGAGGTGAAGCTCTTTCTAAAGTTGCCAGTGAATACAGAATCCCAAAGACAACTCTTTTTAGAGATAAAACTCGCTTGATTCATCAAGGAAAGTTGCCCAAATCATTCTGGAAAAGACGAAAATCTGATGAAGACGGTCAGAAAGAAAGCCGTTTAGAAAAAGCTGTTTTGGCTTGTAAAAATGGAACAATGTCGCAGGCTGCCGCTGCTGTAACTTATCAAATACCAAAGACAACTATATGGCGACGTTTACAAAAAGAACTTAAAGGGGGTTCGACTACTCCGCCAATGTATAAATCTAGAAATAGAGTACCAAATTcaatttctgataaaaatagCCAATCAGTTGTCAAGATGGAAGTTTTGACTGATGATTTTGAACCATATTGTCCAGATGAAGCAGACATGAGTATAACATACATCAGTGATGAAAACATAGGGGAAGAACCTGTCATAATTCTTGCTAGTGCTGATGGAGATGAGGTAGATCTACAATCAAACAAACACAATTTCGTGGTTGTAGAAGATgGTACATctaatgataattttgtatcATGTGAAATGGGAAGCTTAGAAAGTTCATCCtacgcaaaaaattaa
- Protein Sequence
- MGPGGKRDELGKQPQVTLLSITENITDDGEPNNYVKSEDYGNQFTGVVRELFLDESMLDVTLCVNGCKIRAHRMVLAACSTLFQELLCKSSEEQTLFIPDVNLEHLQAIVSFCYNGEIRVPSTEITDMLELAQYLKIEGLREVAGLVESETSNDQVEDEESYVLQESNFMEDDDSEGMEEVTIVSTPKNNKVEKRNNISHSNNVQSLNSIGKRRKSVCKREYSDDQLAAAIKDICSGCSLLEAATKFKIPRSTLYMRAKTLGVKINNTKFIYTIEDMKDAIQAVSEGCSLQQAADIHGIPKTVLWRRMQKEGVQIPRRDNKKSYASERREAAVKALERGEALSKVASEYRIPKTTLFRDKTRLIHQGKLPKSFWKRRKSDEDGQKESRLEKAVLACKNGTMSQAAAAVTYQIPKTTIWRRLQKELKGGSTTPPMYKSRNRVPNSISDKNSQSVVKMEVLTDDFEPYCPDEADMSITYISDENIGEEPVIILASADGDEVDLQSNKHNFVVVEDGTSNDNFVSCEMGSLESSSYAKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00368200;
- 90% Identity
- iTF_00368200;
- 80% Identity
- iTF_00368200;