Cnas003674.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- grn
- Assembly
- GCA_009176525.2
- Location
- NW:398583-469061[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-19 3.7e-16 58.0 4.7 1 35 344 377 344 378 0.98 2 2 7.9e-19 1.8e-15 55.9 6.8 1 35 403 436 403 437 0.97
Sequence Information
- Coding Sequence
- ATGATTATGGATATGACATCGGCCGAATCGAGATGGTATGACAATCCGCGTCTGAGTGGGTCACCGAATGCTGGGACAAGTCATCAATCTACTGGCTCGAGTGGTACTGCCAATGCCAACAATGGAGGCATCGTCGACGCATCCGATATGGGTGCATTCTATTCACTCGAAAATGCTGGCCATCGACGATACTACTCCACTGGATACGGACCACATGCATCAAGAATGACAACTTCGCACAGCACACAACAGATTTGTAGGCCACATTTTCATGCGCCATTACATCCTTGGCTCAGCGAACCAAAATCATTAGCACCAGGCAGTCCATGGGGTAGCCCATTTGCTTGTCCTCAAGAGCCACAAGACAAAGTTGGTCAAGTAGTACAAAGTCATCAAACAGGTCAACACTTGTTTTCATTTCCGCCAACACCACCAAAAGATTCAACACCTGATTCAGTACAAACAGGACCTTCCGAGTATCAAGCCGCAGTGAATGCGTTTATGCATCAAGCTCAAGCATCATCGACTACCTCATTATCAACTGACAATTGTTCATCGTTAGATATAAAACCTTCGATACAACAAAATGGTACAAGTCAATCATCGGCACCGAAACAACGTGAAGGTACGACATCATCAAGTGGCAATACCAATAcacacaataacaataacagtTCGaatagcaataataataacaatacgAATAGTAGTAGTAATCAAAGTAGTTCCTTAAATGGTGGAATTTTCGATAATGCACAAAGTGTATATGGAAACAGTGGAAGCGGCTATGAGAATAGCTACCAAAGCTATCATCAAGCAGGCAATGTACCCACAGCGTCTGGATCATTTCACAGCGCAAATGCGTCCAGTGCTGGTGGTACAAATATTGGCAATATGCGATCGAATTTAAGTCCGCCAATTCATtcccatcatcatcatcatcatcattcgtCGTCActgtcatcgtcatcatcggcCGGCAATAAACCACAAAGGACCAAACCGCGGACCAGTGCTGAGGGTAGAGAGTGCGTAAATTGTGGTGCAACATCAACGCCATTATGGCGACGAGACGGCACTGGTCATTATTTGTGTAATGCATGTGGACtttattacaaaatgaatggaCAAAACAGACCTTTAATTAAACCGAAAAGAAGACTGCTTCAGTCACTTCAGAGTGCAGCACGACGTGCGGGGACATCATGTGCAAACTGCAAAACGACCACAACAACCCTTTGGAGGCGGAACCAAAGTGGTGAACCAGTATGCAATGCCTGCGGATTATACTATAAACTACACAATGTAAACCGACCATTGACCATGAAAAAGGAAGGAATTCAAAcaagaaatcgaaaattatcatcaaaatcaaagaaaaagaagggAATGGCCGGTGGATGCTTACCAATTGGCAGCCATTTGGGAATGAGCGATTTGATGAAACCACTAGATCCTTCGAAAGCATTTTCAGGAGGTTTCCCCACTTCAATGGGTCAACATAGCCATCTATCTGGTTCGTTGCATCCGGCACATGCGCATATGCACGGCGGATGGTATGCCAGTGGAATGGGCGCTCTTGGCGCATCCAGTGGCTTACAAAGTGGATTTTCGTCAGGCGGATTGGGCGGTGGAGTTGTGCCACATTCGCAGTCTTATCATCTGATGgGTGCGACATGGGGACGTGACTACGCGTGA
- Protein Sequence
- MIMDMTSAESRWYDNPRLSGSPNAGTSHQSTGSSGTANANNGGIVDASDMGAFYSLENAGHRRYYSTGYGPHASRMTTSHSTQQICRPHFHAPLHPWLSEPKSLAPGSPWGSPFACPQEPQDKVGQVVQSHQTGQHLFSFPPTPPKDSTPDSVQTGPSEYQAAVNAFMHQAQASSTTSLSTDNCSSLDIKPSIQQNGTSQSSAPKQREGTTSSSGNTNTHNNNNSSNSNNNNNTNSSSNQSSSLNGGIFDNAQSVYGNSGSGYENSYQSYHQAGNVPTASGSFHSANASSAGGTNIGNMRSNLSPPIHSHHHHHHHSSSLSSSSSAGNKPQRTKPRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLLQSLQSAARRAGTSCANCKTTTTTLWRRNQSGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGMAGGCLPIGSHLGMSDLMKPLDPSKAFSGGFPTSMGQHSHLSGSLHPAHAHMHGGWYASGMGALGASSGLQSGFSSGGLGGGVVPHSQSYHLMGATWGRDYA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01351311;
- 90% Identity
- iTF_01351311;
- 80% Identity
- -