Cnas002519.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- ZNF219
- Assembly
- GCA_009176525.2
- Location
- NW:1060352-1103279[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.2 1.9e+02 2.4 1.2 3 23 352 374 351 374 0.90 2 11 0.017 0.64 10.3 0.1 2 20 572 590 571 592 0.93 3 11 0.053 2 8.7 1.8 1 23 610 633 610 633 0.95 4 11 0.0024 0.089 12.9 0.2 1 21 705 725 705 726 0.97 5 11 0.00094 0.035 14.2 0.7 2 23 853 873 852 873 0.97 6 11 1.1e-06 3.9e-05 23.5 1.2 1 23 879 902 879 902 0.98 7 11 0.0031 0.12 12.6 4.8 3 20 940 957 938 960 0.94 8 11 0.17 6.2 7.1 0.2 1 23 969 993 969 993 0.98 9 11 0.0024 0.089 12.9 2.3 1 23 999 1024 999 1024 0.95 10 11 0.00045 0.017 15.2 5.2 3 23 1033 1053 1032 1053 0.99 11 11 3.7e-05 0.0014 18.6 0.2 1 20 1059 1078 1059 1080 0.95
Sequence Information
- Coding Sequence
- ATGCTTGAAGATTTGGATGAAGATACACATTTGTGCATAAAATGCAGTCATACCATAGTCGGTTTGGAAAACTATGTTCGTCATAGAAAAAGTCAATGTAACAAAAGTGTTTCGTCCGCTGCCTCGTTGAACCGTGAAATCGACACCAATCATTCGTATCGATCTTTTGAATTCACTGAACCGCCATCTGTTAAGCACGATAAGCAATTTAACTTTAATTATGAGATTGAATCCGTACACCCCGACCATGAAGATTCACACGATGTTGTATCAAATACAGGCATACTACCATCGCCAATGCATCAATCGGAAAAAGCCAGCGATTACAAAATCGATCCAAATAAATCGCTTTCCGAAAGTTATGACTACAACTATGGTCTGGGTGCTGATGTGTTCTTCTCTTTGCTCAATCTGCAGAGtagcacaaaatcaaaaacacaaaccGTTGCAACAAATGTTTCGGCCGATGGAAGTACTTCTGCATCTTCATTAATAAAAGGCACCGATAAAATGTTACAGCGAAAGCAATCGGATCCGGGTGGTTTGTCGCACAGTGAGCACATGGACGATTGGATCAATACTGGTGCATCGACGAGTGGAACTGATAAGCTTATGAAAGCAGTGAATGCCATTAGCggaaataaaaaacatgtcTACGATTCACCGCAATACAATTATGAGTACACCCATGGTTCGCCGCCCGACCACAATtttgacgatgacgatgatgaaatcGTTGAAGATTTAGTTGAAGATGTGGAAGACATTCCACCACATACCGGAGGCAAATGGAAACCATCGGAAAGACATCACCGTTCAATGCAATCCGCATCACGATGGTACGAACGTTGGGACATTCCCgaagaaaataatcaattagCACTAGGTTCAGTGACAACAGGATCGCATGAAGAATTGGTTGACAATTCAGACGAATATAATCCACCGCCGACTCATACAAAGGGCAAATGGGTTCCTGgcacaaaaatcatcaaattagATTACAAGCACAAAGAACGGCACGATTCAGAAACATTTTCCGAACAATTTTGGTGTCGATCATGTAATCGAAAACTTTCGTCAAAAATCGTTTATGAACgacatttaaaatcaaaattacacACAAAACGCTCTCAAccagaaaatgaattggaacAAGTGTCACTGCCATTGCCGAGCATTGAACACATTGTTGGAAAGAAATCCACGAattttgaaacacaaacaaaccgaaaGCGGAAACGAAAGGATGAAATTGCATACATCACAGAGCATTCGTTTGATGCGAACAAAAAACGTACTCGCAAACGTAATTACATCAAATGTGGTGTGTGTAAAATGCGATTACGAACATTCCTTTACGGCAAGCACCTTATTAGTCATTATCATTACAGACGAATGTTTAAAAATCCAACCGAATCCTATGCCACCATTTTGGATAATATGAATCGCATTGTGCTTCAATCACCTTATCAATGTCAGCCATGTAGATTCTATGCAAATACTGAGGAAATGTTTTTGCGTCATTGGGATTCAAATGAGCATTTGGTAACCGTTTCTGATCTTAATGGTAGATTTTGGTGTGCTTTCtgcaaatttcaatgcattacTAATGATGAAATGCGCTTACACTTGGTCGGCATGGAACATCAGGAAGTAGTAATGGCAATTAATAGGTCGGTACCAATTATTTGtcgtaaaaaatgtttaattcaatgtgaaaaatgcaaagaagaGTTTTCTTTAAACATTGAACTACGAAAACATGCAATGAACTGCACGGATTCACGTGCAGTCGGTACGGCATCAGATCAATATCAAGGAAAGTATTATTGCTCCGATTGCAACGAATATTACTGCTCGAttgttgcatttcaaaaacaCACGACAATTGTTCATTCAACGAAATCATATTTCTGTGGTCCGTGCGAGCTATCGTTCAGTGAATTGGAAGCGGCCAAACGACATCGTGTCTCTGTTGAACATAAAGTCAAAGCTGCTCgtataaaagcaaaaaaatcattaaaacgTAAATGTATTGTATGCGGTGAAATGCAAGATGACTTACTTCTGCTCaaagaacatttaaaatttgtgcATCCGGATCACAGTTATTCGTGTTATTTTTGTGGACAAAAGTTTATTTTACCACAAGAGTTAAGTCGGCATATACGCGACAAAGTGTGCAAAACGGATGATAGAACTCCAAATGAGGATATGTGCCATGAAAGCGATAGCTTAAATCCAATGTCACTTCTAGAGTTGCCTATAATAACTGATATTACACAAGACGTTGAAGTGACAAAATTGGTAGTTGCACAGCAAAATGATCAAATGACGGTCGATACATCTGTGACGGTAGAGTCTTTGGTGCCAGATGATTATGTGATCATTGAGCATGGGGCCGAATTGAATCTAGACGAAGACCCAAGGGGTGAGGCCGAACATTCAGTTCTATGGGGTTGTAAACAATGTGATTTTCGaACACAATACCAGGCCGAATGtatatttcatgaaatgcTGCATAAGTGGAATATATGTAATGACAGTAAAATGCCATGTCCAATGTGTAATCgaacatttggaaaaaattcacTTCGAATGCACCTACGTATGCATACGAATGaacgaattttcaaatgcGATCAATGTGACATGAAATTTACTCGCAAAGCCAATCTAAAAGAGCACATTCAACGCATTcatttgaagatgaagaaatcCAAACCGAACAAGCCGTCATCAACGGCAGCGGCGAATCGATTAAAGCAGAAAAGTTCATCGTCGCCATACAGTAATGAACAGCAATTGTTTGGTTGTTCGATATGCGAGAAAAGATTTCGAAAAAAGAGTTTGCTTGAACAACACATGCATTGTCATCGTGAGATGATAACCGTTAGAAGTTTCAAATGCCCGGAACAAAATTGCTTATTTAGCGGACGAAGTGCAGCTGAATTACGAGTTCATAAAAGCACCCACTCGAATGAAAAGAACTATTGCTGCACCGTGGAAAATTGTGATTATAGAACAAAAACGAACGCATTACTCAACAGaCACATCAAGTCTCAGCATCAAACAGATGTCATTCAGTTGTTGTGTCCACATTGTGACTTTCgtacaaaaatttcaagtcaTTTAAAACGGCATATTCGCACGCACACCGGTGAGAAACCATATCAGTGCCCACATTGTGATTATGTCTCAAATAATCCGGAAAATTTGCGAAAACACGTAATCAATACCAATAAGCACCCAGGTAGATTCCTCTACGAATGCAAATTATGCACAGAAACAAATGAAGACCAACCGTTTGCtacaaataatacaaaagaaTACAAATGTCATCTTGTTTCCATACataatcaaaagaaataa
- Protein Sequence
- MLEDLDEDTHLCIKCSHTIVGLENYVRHRKSQCNKSVSSAASLNREIDTNHSYRSFEFTEPPSVKHDKQFNFNYEIESVHPDHEDSHDVVSNTGILPSPMHQSEKASDYKIDPNKSLSESYDYNYGLGADVFFSLLNLQSSTKSKTQTVATNVSADGSTSASSLIKGTDKMLQRKQSDPGGLSHSEHMDDWINTGASTSGTDKLMKAVNAISGNKKHVYDSPQYNYEYTHGSPPDHNFDDDDDEIVEDLVEDVEDIPPHTGGKWKPSERHHRSMQSASRWYERWDIPEENNQLALGSVTTGSHEELVDNSDEYNPPPTHTKGKWVPGTKIIKLDYKHKERHDSETFSEQFWCRSCNRKLSSKIVYERHLKSKLHTKRSQPENELEQVSLPLPSIEHIVGKKSTNFETQTNRKRKRKDEIAYITEHSFDANKKRTRKRNYIKCGVCKMRLRTFLYGKHLISHYHYRRMFKNPTESYATILDNMNRIVLQSPYQCQPCRFYANTEEMFLRHWDSNEHLVTVSDLNGRFWCAFCKFQCITNDEMRLHLVGMEHQEVVMAINRSVPIICRKKCLIQCEKCKEEFSLNIELRKHAMNCTDSRAVGTASDQYQGKYYCSDCNEYYCSIVAFQKHTTIVHSTKSYFCGPCELSFSELEAAKRHRVSVEHKVKAARIKAKKSLKRKCIVCGEMQDDLLLLKEHLKFVHPDHSYSCYFCGQKFILPQELSRHIRDKVCKTDDRTPNEDMCHESDSLNPMSLLELPIITDITQDVEVTKLVVAQQNDQMTVDTSVTVESLVPDDYVIIEHGAELNLDEDPRGEAEHSVLWGCKQCDFRTQYQAECIFHEMLHKWNICNDSKMPCPMCNRTFGKNSLRMHLRMHTNERIFKCDQCDMKFTRKANLKEHIQRIHLKMKKSKPNKPSSTAAANRLKQKSSSSPYSNEQQLFGCSICEKRFRKKSLLEQHMHCHREMITVRSFKCPEQNCLFSGRSAAELRVHKSTHSNEKNYCCTVENCDYRTKTNALLNRHIKSQHQTDVIQLLCPHCDFRTKISSHLKRHIRTHTGEKPYQCPHCDYVSNNPENLRKHVINTNKHPGRFLYECKLCTETNEDQPFATNNTKEYKCHLVSIHNQKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -