Cnas000891.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:1388-2976[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.9e-05 0.0018 18.3 3.8 1 23 158 180 158 180 0.98 2 10 2.3e-06 8.7e-05 22.4 1.8 1 23 186 208 186 208 0.97 3 10 0.0011 0.04 14.0 5.4 1 23 240 262 240 262 0.98 4 10 0.17 6.2 7.1 7.7 1 23 268 290 268 290 0.99 5 10 0.065 2.4 8.4 0.2 1 19 296 314 296 316 0.90 6 10 0.011 0.42 10.8 3.9 1 23 323 345 323 346 0.89 7 10 2.1e-05 0.00078 19.4 1.4 1 23 352 374 352 374 0.98 8 10 3.7 1.4e+02 2.9 0.2 3 19 382 398 380 399 0.91 9 10 3.8 1.4e+02 2.9 4.4 1 23 407 429 407 430 0.90 10 10 0.019 0.72 10.1 1.1 1 23 436 459 436 459 0.96
Sequence Information
- Coding Sequence
- ATGAATCCGTATCGAAACAAAGGAACATTGGGTGCGAGGGCCAAAAAGCACAAGTGTAAGTGGCAGCAAAAAGAAGCacacattaaaatcaaacaagaAATAAAGGAAGAGCCAAGTGACGGTGCCTATTTGATTCAGGACACGCCGACATCACCTCAAATTGCGACGAATTCAATCATAAAATCGGAAAGCGAGAGCGATAGTGAGCTAGACTTGGGAAGTAAGCCGAGTTATTTGAAGAAAGAGGTCAAAAGCGAAGACGAGTGTTCGAAGAAGGAATGTGACCCGACGAAGGATagaaatggaatggaaaacGTTGATCGGAATGGGGAAAGCTTAAGCAGTTTGAGACCAAATTCGAAAGGCGGTCAGAACAAAAAACGTCaagcaaaacgaaagaagTCAAAAGGCGTAAAGAATGACAGAATGGCCAAAGGGCCAAAGAAGCCGGTTTCGAAGCATCAGAAGCAACACAAATGTAATTTCTGTAATTATGTGACATCGCAAAAAGGACACCTCACAGTACACATTCGTGCTCATACCGGCGAAAAGCCGTTCGCATGTGAAATATGTGGCATAGCTTTTGCACACAAGCCACATTTGAATCGTCATAAGAAAACGCATGAACCAAAActtcaattttgttcaaagtGTCGTCGAGGTTTTGCAcatgaaatcgataaaatcaaCCACAAAAGCGAATGTGAACATCGTCAATATGTCTGTCATCTATGCAAGAAACCAACTCATACTTTCAAATCTCTCAAACGGCACATGCTAATCCACAATGGTGTGAGACCATTCAGATGCCATGTTTGTGCCAAAAAATTTGCATGCAAATCTCATGTCATCACTCATTCACGCACCCACATTAAAGAACTTCCATTTGATTGCGCACAATGTGGTCGACGATTCGCCAATGAAAACGAGAAACAATCGCATGAGGATCATTGCAAAGGCCGACGATACGATTGTTATCTTTGTCCATTCAAACGATTtcgaaaatatgaattgaagCAGCACATGCAAATCCATCACACTGGCGAGAAACTATTCAAATGTGGTGTTTGCGGAAAGAAATTTCTTCACAAAGGTAATCTCAAGCAACATTTGGCtatacatttcaaacaaaaaccgGTCCATTGCTCCAAATGCCTTATGCCATTCGCAAACGAAGACGATAAGAATGCACATGAAGGATGCTGCAAGCGTCGCCTTTATCAATGCTACGTATGCAAAGTTTTAAAGCATCAATCATCACAATTAAAGGGTCACATTCGAAACCACCACACTGGCGAAAAGCCATTTCCATGCAAACTATGTGGCGGCCGTTTTTCACTACTTTGTCTTGCCAATcgacacatgaaaaatgttcatggTTTAAAGAAATGA
- Protein Sequence
- MNPYRNKGTLGARAKKHKCKWQQKEAHIKIKQEIKEEPSDGAYLIQDTPTSPQIATNSIIKSESESDSELDLGSKPSYLKKEVKSEDECSKKECDPTKDRNGMENVDRNGESLSSLRPNSKGGQNKKRQAKRKKSKGVKNDRMAKGPKKPVSKHQKQHKCNFCNYVTSQKGHLTVHIRAHTGEKPFACEICGIAFAHKPHLNRHKKTHEPKLQFCSKCRRGFAHEIDKINHKSECEHRQYVCHLCKKPTHTFKSLKRHMLIHNGVRPFRCHVCAKKFACKSHVITHSRTHIKELPFDCAQCGRRFANENEKQSHEDHCKGRRYDCYLCPFKRFRKYELKQHMQIHHTGEKLFKCGVCGKKFLHKGNLKQHLAIHFKQKPVHCSKCLMPFANEDDKNAHEGCCKRRLYQCYVCKVLKHQSSQLKGHIRNHHTGEKPFPCKLCGGRFSLLCLANRHMKNVHGLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -