Cnas006132.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:4848115-4850817[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 4.4 7.6 0.1 2 23 210 232 209 232 0.94 2 12 0.038 1.4 9.2 4.5 1 23 265 287 265 287 0.98 3 12 0.18 6.6 7.1 1.0 2 23 299 320 298 320 0.94 4 12 0.035 1.3 9.3 3.2 2 23 342 364 341 364 0.95 5 12 0.0041 0.15 12.2 0.5 2 23 398 419 397 419 0.97 6 12 0.18 6.7 7.0 0.7 3 23 427 448 425 448 0.91 7 12 0.00073 0.027 14.6 0.7 1 22 455 476 455 478 0.90 8 12 0.00022 0.008 16.2 4.6 2 21 486 505 485 507 0.94 9 12 3.7 1.4e+02 2.9 1.1 2 23 519 540 518 540 0.89 10 12 0.25 9.4 6.6 0.1 2 23 546 568 545 568 0.96 11 12 0.00011 0.0039 17.2 0.5 1 19 573 591 573 593 0.96 12 12 0.0001 0.0038 17.2 4.5 1 23 601 624 601 624 0.98
Sequence Information
- Coding Sequence
- atgtcattcacaAATTCGTGCCGGTTGTGTTTGACCATAAACAATGGCAATCACCTGGATATATTCAGTGTCAAtggaatggaaatgaaaatgtgcgaaaTTATTGccgaacattttaaatgcgaGGTAAATGTGTTGGATTCATTACCGAATTTCATATGTCAAGTGTGTTGGCATTTAACGGAAGCATTTCATGAATTATATCAAAAGTCGAAAGTCACACTTGAAAATCTATTGAATCGATCGATTAAAATTGAGCCAGAGGTGAATGAGTCGTGGCCAAGTTACCATGCAGTCCAGTATATTGAAGATTCACAACCAGAAATTGGTCTGATAAAAGTCGAAACGATTTTGAAAAcggaacaaaattcaaataattcgaAAACGATCGAAGAATCAGATTCAAATGGTGTTGATCCCattgatttcgatgaaaatacgGATGAATCAGATGATGATAGTAACAATGCAGAGAATGTTGAATCAGATGTTGAAGAATCAGCAAAAGAAAAGGCAGTAATACCCACTGAAACTATAGATAAACCAAAACGAAAGCGAACTAAAGCGAAGCAACTTAAGGCCAACTTTGAAAAGCAATTTGCCGAAAATAAGCAGTTGTTTGATATGTCATGTGATTTATGTCCAaccatttttgaaacactATACGAAGCTCAAGAACATTATGCAAAAGAGCACAAAAATCCACGTGGATATATCAAATGTTGCAATCAACGGCTTATTTATCCGTGCTTCGTGTTGAAACACTTAGAACGACATATCAATCCAAATAAGTATAGATGCTCGCAATGcgaaaaagtatttttgtgCAATATTCAACTCACtaaacacatgaaaaaacacaccgaaaaaatcgttccgaaagaaaaaaatctaccaTGCAACATATGTATGCAACTGTTTCTCACACAATCTGGTCTCGACCATCATATGCGACGACACCAGGAACGAGATGAATCCGAGGATGGTCCTGTGATGAAGTTTATAGCCGAAAATTTTGATATGAAATGTGATCATTGCGATACAATATTCAGCGGATTTCACGATGCACGCCGTCATTACAAAGAATTACATAACGACGAGAAAGGCTATATTAAATGCTGTAATATAAAATTAAGGGAATTATGCCGTGTTCGGGAGCACGTATTAtCACACTTGGATCCAGATTGTCTGAAATGTGATATATGTGCAAAGAGTTTTCCAACGGGACTGAGGTTGGCTCGACATAAACGCCGCCATAAGATGAAGAAAAGATTCCTTTGTGATTGCTGTGGGAAATCTTATGGGGATAAACTTGCAATCACTCGTCATCTTCTCAGTATTCATGTCAATTCGAAACCGAAATACGAATGCGACATATGCCAGAAAAAattCCGGTTAGACTCACTATTGAGAAATCACAAATATGCCGTGCATCGAGAGAAGAACCGTTTTTCTACGTGTGAGGTATGCGGAAAATCTTTCTATACGAAATTCCACTTGGATAAACATATGCTTTGCCATATGGATAAATCCGAACGATTGTCGGAACGAATACAGTGTCAATATTGCGGCGAATGGCTTATGACGAGAAGTGGTGTCTTTTATCATCACCAAAAACACACGAGTGGCATCCAAAAATGTGGTCAATGTGAAATGGAACTACCAAATCGAGTTTCACTACTTGGACACATTCGACAATACCATCGAgaacataaatttaaatgtagcTATTGTGATAAAAAATTTCCCACCAGAGGAACCATGAagGCTCACGAAGAATGTCATACACGGCATAAAACTTATGAATGCGAATTTTGTCCGAAAACgttcaacaacaaacattccataaaaacacacacacgcagaAATCATGGCGAAGaagttaaaattaaaaaaatgtatttgaataaaaattaa
- Protein Sequence
- MSFTNSCRLCLTINNGNHLDIFSVNGMEMKMCEIIAEHFKCEVNVLDSLPNFICQVCWHLTEAFHELYQKSKVTLENLLNRSIKIEPEVNESWPSYHAVQYIEDSQPEIGLIKVETILKTEQNSNNSKTIEESDSNGVDPIDFDENTDESDDDSNNAENVESDVEESAKEKAVIPTETIDKPKRKRTKAKQLKANFEKQFAENKQLFDMSCDLCPTIFETLYEAQEHYAKEHKNPRGYIKCCNQRLIYPCFVLKHLERHINPNKYRCSQCEKVFLCNIQLTKHMKKHTEKIVPKEKNLPCNICMQLFLTQSGLDHHMRRHQERDESEDGPVMKFIAENFDMKCDHCDTIFSGFHDARRHYKELHNDEKGYIKCCNIKLRELCRVREHVLSHLDPDCLKCDICAKSFPTGLRLARHKRRHKMKKRFLCDCCGKSYGDKLAITRHLLSIHVNSKPKYECDICQKKFRLDSLLRNHKYAVHREKNRFSTCEVCGKSFYTKFHLDKHMLCHMDKSERLSERIQCQYCGEWLMTRSGVFYHHQKHTSGIQKCGQCEMELPNRVSLLGHIRQYHREHKFKCSYCDKKFPTRGTMKAHEECHTRHKTYECEFCPKTFNNKHSIKTHTRRNHGEEVKIKKMYLNKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -