Basic Information

Insect: Contarinia nasturtii
Gene Symbol: ush
Assembly: GCA_009176525.2
Location: NW:1402927-1446997[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.038 1.4 9.2 0.1 1 20 220 239 220 241 0.93

2 9 0.0016 0.06 13.5 0.7 3 23 283 303 281 303 0.98

3 9 0.01 0.37 11.0 0.6 2 20 342 360 342 361 0.93

4 9 0.072 2.7 8.3 3.3 2 21 718 737 717 738 0.94

5 9 0.0045 0.17 12.1 0.0 3 20 784 801 782 803 0.91

6 9 0.018 0.66 10.2 0.1 1 23 840 862 840 862 0.98

7 9 0.0011 0.04 14.0 0.7 1 23 868 890 868 890 0.99

8 9 0.00018 0.0069 16.4 1.1 1 23 947 970 947 970 0.97

9 9 0.018 0.66 10.2 1.0 2 21 1098 1117 1097 1118 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.038	1.4	9.2	0.1	1	20	220	239	220	241	0.93
2	9	0.0016	0.06	13.5	0.7	3	23	283	303	281	303	0.98
3	9	0.01	0.37	11.0	0.6	2	20	342	360	342	361	0.93
4	9	0.072	2.7	8.3	3.3	2	21	718	737	717	738	0.94
5	9	0.0045	0.17	12.1	0.0	3	20	784	801	782	803	0.91
6	9	0.018	0.66	10.2	0.1	1	23	840	862	840	862	0.98
7	9	0.0011	0.04	14.0	0.7	1	23	868	890	868	890	0.99
8	9	0.00018	0.0069	16.4	1.1	1	23	947	970	947	970	0.97
9	9	0.018	0.66	10.2	1.0	2	21	1098	1117	1097	1118	0.93

Sequence Information

Coding Sequence: ATGTCCCGAAGGAAACAATCAAATCCAAAACCACTGCTAAAAAACGAAAGCGAAAATTCAGTACGAAACATGGCTATATTACAACAAGATCCAGAAAGCATTTCAACCGAAATAGACGACGAACAGAGTACAGTGGCCAGCGACGATAACACATTAGCGCGGTCACAATCAATTAGCGAAAGTGATAAAAAAGATACGCCTGCGAATGATGCATCGCCATTATCATTAGAAACGAGTTCGCACAGCAGCACTCCTGCCACATCGACAACACCCATTGCATCACCAAACTTACCGATCGATATAAAAATTGAGACGAAAACCACTGGCTCAACTGAATTGAATAGTACCAATATTGAACTACCAAAATTGCGATTGAATATAACGCTTGCATCGGATCCAGCATTGCAGCCAGAAGCAAAAGATATACAAAGTATACGAGCGAATACGGTTGAAAATTACGAAACTGAATCAAACTGTGATGATGAAATACAAGAAGATTCCATATCACCGCCCATACTTTTGCACGAAGATAATGGACCACCACCTGAAAAGATTCGTAGACGACATGATTCAACGTTTCGGCCATCtggaaataaatttgttgttaaTTTGCAACAAAACATTAACCCAGCCGACATCCTTCCACGAGTGCCAGCATTCATTTGTCAACCGTGTGGCATTAAATTCTCATCCATTTCAACACTGGAGGCTCATCAAACATTCTACTGCACTCACAACAAAAAAGATACCGAAGACTCGAATAATCCACTGAAAGTGATATTAGTCGATGACGGCAGCAGCACTGAATCAGCAACAAAAACTGTTCGCACCACCAAACAATATGGATGTAATCAATGCTCGTATAGTGCTGATAAGAAAGTTTCATTAAATCGTCACATGCGAATGCATCAAACATCACCAACCTCCAGTTCGGTCACATCGAATGGTGATGATTGTTCTAGTCAaaTTCAACCATCTCTACAGCAACCACAACAACCAATACAGTTGCATCAAGTCGACCGATACTGTACGGATTGTGacattcgattttcaaatacaaaaacatttcgTGCTCACAAAGAATTTTATTGTGGTAATAGACATCGAGATGGACCGGGTCCACCCACTTCTTCTACAAAAAACGTCACCCAAAAAACCGTTCAACCGAAAACCACGGAGGAGAATAACAAATTTCCAGAAACGATCGGACCAACTCAACCCTTTTTGGCACTACCTACAACGCCCATTATTATCATACCATATTCTTTGATTCGAGGAGCAAATGTATTGCCAGGACCTTtGAGTGTATCGGCTGGAATAGCGAATCCCGATTTGAATTGTTATGTTTTGCAAAATGGATCATTGCAACCAATAGCTCAAGCCATTTCAGTACCAAGTGTAAGTAAGGGGCAATCGACAAGACCACAAACACCCGTCGCCAAGACATCGACACAACCAAGCGATTCAGAAGTTAGTCCAAATCATCTAGAAACAACATCGAAAGTTGCTAAACGAAACACAAATAGCcgAGAGGGAAATACAACGCCATTGGACTTATCGGTACGACGGTTATCTGTCGACCGTTCGTATAGAGAACGTTCGGCATCAATTTCATCTTCTATATCGGGTGACTTACAGCGAACAAATATTGATGCTCTAAATGATGGCAAAGAGAACCTATTACTAAACAGCAGTAACTCTGCATCGCCGGAGCAAATTGTTTGTGCACCATCATTGCCCGGATCTCCACCCCCATTGACTCCATCACCAAAACGTAGCTCGAGCAGTCCACGTGGTATTCTAACGCTGTCACCAAGCTCTCTTGCTTCTAGTCTTCATTTGAATCAACCAAATGCGCAGACAGCTTCAACTATTCTTCGACCATTATTGGTCAATGAATTAACGGCACGTATGGCTGATTCGAATTCGGTTGCTGCAGTTTTAAATTCTTCAGCACAGCACTTGCTTGATGGTCAAAACTTCGATTTAGCTCTAAATATCGCaacaaatgtaaacaatgttCCGTTACCAATTGCAAAAACAACATCACCAATTGCAGTAGCGGCTGGcattacaaaaaaacaaattgttggTGCATCAACCGCATTGCCGCTGGTTCAACCACAAATTTTTGTAAAGCAAGGTGTATCAAAATGCAAAGAGTGTAACATTGTGTTTTGCAAATATGAAAACTATTTGGCACATAAAAAACACTACTGTTCGTCaagaaatattgaagaaaatacaGAAGGAAAAGTAAAACCAAGTCCACCCACATCCCCACTGGCAGCAGCGAATCAAACTGGAAACTCGGCTGGAACAATACACGGTGCATATCAACAATTAATTTGTGCGGCTTGTGGAATTAAATTTACATCACTTGACAATTTAAAGGCGCACCAAACATATTACTGCACAAAAAGAATTGAAGTTCCAGCGGTGGTCAAGGATAAATGTaccaaatgcaaaatgttcCATGATGCATCGCAAACGTGCGCTACTACGAATCAGAATCTTTTTAAATGCCCTGTGTGTGATGTGGTCAGTGCAAATTCAACTGAATCTCGTAAGCATTTAGAAACGCACGCTGGTGTCAAAGCATTTAGATGCACAATCTGTGGATACAAAGGCAATACATTGCGTGGAATGCGCACACATATTCGAATGCATTTCGATAAAAAGACAAACgatttcaatgaagaaaattacatATCATGTACCTTGGATGACGAAAATGCTGAAGCTGCTGCAACTATATTACCTTCACCTACACTATTGAATCAAGCTGCATCACCTGAGAATGCTCAGCCAGCGACCACAGCTGCTATCGCACAAACATATCACTGTGAAAAATGCACCTACACATCAATATCTAAGGGAAATTTGATTCGACACATAAAAATTGCACACTCAACTGATGAACAAATTCCGTCGTCTATAATTTCGTCTCCTTTAATTGGGGAAGGTGACGAGAGCTTATTGTGCGATGCTGAAACTGATACACAAAATTCAGCTAGAGTAATTGTGAAAACGGAACCATCAGAATCAAAATCTTCGGATCGATCACCAATTCTTATTCCAGAATCAAATGATATTGTCATGAATACcataaaaattgagaatgTCGAAATCTCGGACAACGAAGATGACGAAAAGAGTTCCGATATCGCCGATTCTGATTCGGCTCGAACATTCCAAAGAAGTTCACACGTAACGAGAACACTTTTAAGTGGTGTAACAACagccaattcaatttcattaaatgcaTCCACATCTGGAGACGACAATAAATATTGTCATGTTTGCGACATCAAGTTTAAGTATATGAGTTCATATATTGCTCATAAAAAATCGTATTGCCGAAATGTTCCAAATGAATTGGATATTGGACCAGTCACACCAAATCCACCAAGATCGTCACCAAACCAGACATCAGTCGTTACATAA
Protein Sequence: MSRRKQSNPKPLLKNESENSVRNMAILQQDPESISTEIDDEQSTVASDDNTLARSQSISESDKKDTPANDASPLSLETSSHSSTPATSTTPIASPNLPIDIKIETKTTGSTELNSTNIELPKLRLNITLASDPALQPEAKDIQSIRANTVENYETESNCDDEIQEDSISPPILLHEDNGPPPEKIRRRHDSTFRPSGNKFVVNLQQNINPADILPRVPAFICQPCGIKFSSISTLEAHQTFYCTHNKKDTEDSNNPLKVILVDDGSSTESATKTVRTTKQYGCNQCSYSADKKVSLNRHMRMHQTSPTSSSVTSNGDDCSSQIQPSLQQPQQPIQLHQVDRYCTDCDIRFSNTKTFRAHKEFYCGNRHRDGPGPPTSSTKNVTQKTVQPKTTEENNKFPETIGPTQPFLALPTTPIIIIPYSLIRGANVLPGPLSVSAGIANPDLNCYVLQNGSLQPIAQAISVPSVSKGQSTRPQTPVAKTSTQPSDSEVSPNHLETTSKVAKRNTNSREGNTTPLDLSVRRLSVDRSYRERSASISSSISGDLQRTNIDALNDGKENLLLNSSNSASPEQIVCAPSLPGSPPPLTPSPKRSSSSPRGILTLSPSSLASSLHLNQPNAQTASTILRPLLVNELTARMADSNSVAAVLNSSAQHLLDGQNFDLALNIATNVNNVPLPIAKTTSPIAVAAGITKKQIVGASTALPLVQPQIFVKQGVSKCKECNIVFCKYENYLAHKKHYCSSRNIEENTEGKVKPSPPTSPLAAANQTGNSAGTIHGAYQQLICAACGIKFTSLDNLKAHQTYYCTKRIEVPAVVKDKCTKCKMFHDASQTCATTNQNLFKCPVCDVVSANSTESRKHLETHAGVKAFRCTICGYKGNTLRGMRTHIRMHFDKKTNDFNEENYISCTLDDENAEAAATILPSPTLLNQAASPENAQPATTAAIAQTYHCEKCTYTSISKGNLIRHIKIAHSTDEQIPSSIISSPLIGEGDESLLCDAETDTQNSARVIVKTEPSESKSSDRSPILIPESNDIVMNTIKIENVEISDNEDDEKSSDIADSDSARTFQRSSHVTRTLLSGVTTANSISLNASTSGDDNKYCHVCDIKFKYMSSYIAHKKSYCRNVPNELDIGPVTPNPPRSSPNQTSVVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01351124;
90% Identity: -
80% Identity: -