Basic Information

Insect: Contarinia nasturtii
Gene Symbol: ZIPIC
Assembly: GCA_009176525.2
Location: NW:8224-11564[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.8e-05 0.0018 18.3 1.7 2 23 570 591 569 591 0.97

2 8 9.4e-08 3.5e-06 26.8 1.1 1 23 597 619 597 619 0.99

3 8 1.4 52 4.2 0.4 1 20 625 644 625 646 0.88

4 8 0.045 1.7 8.9 2.3 1 23 652 674 652 674 0.98

5 8 0.0011 0.039 14.1 2.4 1 23 680 702 680 702 0.99

6 8 0.8 30 5.0 0.3 1 20 708 727 708 729 0.90

7 8 0.033 1.2 9.3 1.8 1 23 735 757 735 757 0.98

8 8 1.4e-06 5.4e-05 23.1 7.2 1 23 763 785 763 785 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.8e-05	0.0018	18.3	1.7	2	23	570	591	569	591	0.97
2	8	9.4e-08	3.5e-06	26.8	1.1	1	23	597	619	597	619	0.99
3	8	1.4	52	4.2	0.4	1	20	625	644	625	646	0.88
4	8	0.045	1.7	8.9	2.3	1	23	652	674	652	674	0.98
5	8	0.0011	0.039	14.1	2.4	1	23	680	702	680	702	0.99
6	8	0.8	30	5.0	0.3	1	20	708	727	708	729	0.90
7	8	0.033	1.2	9.3	1.8	1	23	735	757	735	757	0.98
8	8	1.4e-06	5.4e-05	23.1	7.2	1	23	763	785	763	785	0.99

Sequence Information

Coding Sequence: ATGATTGGAAATTGGCGCCAGACTTTATCCAACTACTGGACGAATACTCAAGTTGCGACGGAGAAAACGCTGCAATCGGTGAAAGATGATTTCGAGTGCAGCGGAATGGTGTTTGACGACAAGTTTAAGGAATACTTTCTACGTACAACGAATGCTCGAGTCGTTCAAGTGTATGAAGGATTCATCTTGGAAGTTCAATTCAATCCCGAGCCAACCAACAAAAAGACAACCACCGATGCAAGCGGTGAGactgaaataaatcaatcgcATAATTGCCAGCAGACTGACTCAATTCTACCAACAATAAGTCAAGAGGTAAATGCACTCGGCGATCGGCCACgaaatttgccatttttaacACCCTTTTATGATGAAACAAATGGATCTGAAGAACGCGTGCCGAACAATAAAACGTTCCAAGTACATTCCACATTTGTGGATGAAAACATCGATCCGAAAAATGCCACTGAATCGATCGAAGCAATGATTGGCAACCAACCAATTTCGACCGTTCAACTCAACGAGTCTCAAGCGACTATTCTGAGTGAAAATGGTCTGAATGGAAACGAAATTGACAGGGATAATCCAATCGAAACATCGAACAAAATACTGACAATGGCTTATCAAAATTCTGTGCATCCAACCGATCCGATTGTACAAGGGGTAGATCCAGAGACAAATGGAGTCACCCATTGCCTAGAAATGAATAATTGTATAAATGAACATCAAGCAATGTCAGCTTTGACCCCAATCCATGAATTATCTGCAATACAATTCCCAGGCGATGAAACACTTCAACGATTTGTGTCGTTTGTGAGCAACAACATTGATGAGAACAATGACACAGCATCGGTCCGAGAGATGCTCGGCAGTGAATCATTTTTCGCTCAAGTCAACGTAATTCAAGCGAAtgctttaaatgaaaatagccTGAATGGAAACGAAATTGGCAGTGACAATCCAATCCAAGCTTCGAATAAAGAAATAGCAATTGATAGTCAAGCACAGAGCATTTCTATGCAGCCAACCGTCGATTTGATTGCATCATCGGTGGCGCCAGAATTAAATGACGGAGCCAATCTTCCTGGCGTGAATGAACATCAATCAATGCCAGTCATAACAACATTTCATGAATTATCTCAAGCACACATCCTAGTCACAGCTCCGCTTGGAGTAATACTCGGCAACGACATGATGTCCGTAGAATTTGACGAGCCTCAAGTCACTCTCACGGATAAAATTGGCATTAGTGAAGATGATATACGAAATAGCACAGCTGTCAATGGAGTAACAAAGACAAACGTTCAACCAGATTCAGCCATCAGTGAAAGTGACGACATTATTGTAACGAATGCCTCAGAACTGGAGGTGATACACGTCGATCGACCAAATAATCTACCAGTTGTTGatttaataattgaaaatgccGAAGTACCTCCAGAAAAGGCAAGCAATCAAGCCAATCGAAAGGACGTAAAGCAAGTGAAGGCGAAccaacgaaagagaaaaattgctAGCGAAACGACATCGAATGACAATTCGAAGAAGAAACGGAAGATTGAACCACTTTCAGAATCAACACTGATTGATGTGGCGTCAATGGGAGAAACAAAGAGTTCGAAACAATCAAAGAAAGTACAACGGAATGAAACCAAATCAGTTGGTGTACAACTGAATGGATCGACATCAAATGGGAAAtctaaaacaaaatgtgagtTTTGTAATTATGTGACTACACGTCCGTCACATCTGATAATACATAGACGCATTCACACTGGCGAGaaaccatttgaatgcaaaatttgTGTAAAAGGATTTACTCGTAAAGATGCTCTGAAAACGCACATGCGAACTCACGCAAATCAATTTCCATTCCATTGCTCGATTTGTCGACAAGGATTCGCGGTGAAATGGGAAAAGGAGACGCACGAGAAAAATTGTGATCAACGGCGATTTGAATGTTACGTGTGCAAATATGCTACATTATACAAAACACACTTAGTCACACATATGCGCATTCATACCGGTGAATTGCCctttaaatgcaaaatttgtGCAAAAGGATTTGCTCAAAAGGGTGTTCACACAAGGCACATGAGAACTCACGCAAATCAATTCCCATTCCATTGCTCGATTTGTCGACAAGGATTTGCGGTGAAATGGGAAAATGAGACGCACgagaaaaattgtaatcaacgacgatttgaatgttatttgtgCAAATATGCCACATTGAACAAAGGACACTTAGTCACACATATGCGCCTTCATACCGGAGACAAACCATTCCGTTGCTCTCATTGCCCAAAACGATTCGTCACAAAATCTCATTTGAAATGGCATCAAAAACGTCATCAGATCAAAACCAAATGA
Protein Sequence: MIGNWRQTLSNYWTNTQVATEKTLQSVKDDFECSGMVFDDKFKEYFLRTTNARVVQVYEGFILEVQFNPEPTNKKTTTDASGETEINQSHNCQQTDSILPTISQEVNALGDRPRNLPFLTPFYDETNGSEERVPNNKTFQVHSTFVDENIDPKNATESIEAMIGNQPISTVQLNESQATILSENGLNGNEIDRDNPIETSNKILTMAYQNSVHPTDPIVQGVDPETNGVTHCLEMNNCINEHQAMSALTPIHELSAIQFPGDETLQRFVSFVSNNIDENNDTASVREMLGSESFFAQVNVIQANALNENSLNGNEIGSDNPIQASNKEIAIDSQAQSISMQPTVDLIASSVAPELNDGANLPGVNEHQSMPVITTFHELSQAHILVTAPLGVILGNDMMSVEFDEPQVTLTDKIGISEDDIRNSTAVNGVTKTNVQPDSAISESDDIIVTNASELEVIHVDRPNNLPVVDLIIENAEVPPEKASNQANRKDVKQVKANQRKRKIASETTSNDNSKKKRKIEPLSESTLIDVASMGETKSSKQSKKVQRNETKSVGVQLNGSTSNGKSKTKCEFCNYVTTRPSHLIIHRRIHTGEKPFECKICVKGFTRKDALKTHMRTHANQFPFHCSICRQGFAVKWEKETHEKNCDQRRFECYVCKYATLYKTHLVTHMRIHTGELPFKCKICAKGFAQKGVHTRHMRTHANQFPFHCSICRQGFAVKWENETHEKNCNQRRFECYLCKYATLNKGHLVTHMRLHTGDKPFRCSHCPKRFVTKSHLKWHQKRHQIKTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -