Cnas007487.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:1417430-1421920[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00035 0.013 15.6 3.1 1 23 231 254 231 254 0.97 2 14 0.88 33 4.9 0.3 1 23 256 278 256 278 0.96 3 14 0.83 31 5.0 0.1 2 23 316 338 316 338 0.89 4 14 0.0014 0.053 13.6 1.4 1 23 371 393 371 393 0.98 5 14 0.00041 0.015 15.3 0.9 1 23 403 426 403 426 0.91 6 14 0.02 0.76 10.0 0.3 2 23 432 454 431 454 0.96 7 14 0.038 1.4 9.2 1.2 2 23 472 494 471 494 0.95 8 14 0.035 1.3 9.3 5.0 2 23 528 549 527 549 0.97 9 14 2.9e-05 0.0011 19.0 1.5 1 23 553 576 553 576 0.95 10 14 1.8 68 3.9 0.3 1 10 583 592 583 596 0.94 11 14 2.2e-06 8.2e-05 22.5 1.4 2 23 616 637 615 638 0.94 12 14 0.16 5.9 7.2 0.1 2 23 682 704 682 704 0.95 13 14 0.00021 0.0078 16.3 0.8 1 19 710 728 710 730 0.96 14 14 0.047 1.7 8.9 0.3 1 23 738 761 738 761 0.98
Sequence Information
- Coding Sequence
- atgggttCAAACTTGGGCGAAAAGTGTCGTCTGTGTTTTTCTACTggattttttcacataaatttattcacaacATCGCAACGTGTGATTGAGTCCATTCGTGAAATATTCCGTAGTGAGGTCGATGAATTTGATGCACTGCccaattttgtatgtgtggATTGTTGGTTGAAGATGAAGACATTCtatgaattttatcaaaagGTGATTGCCGCACAGAGACAATTTCTTTCGGATGGCATAGTTCCTATTAAGATCGAATCGGACCATGAAGAACCGGTATTTAATGAAACCAATTATGACGATCTCTcAATTCCGGAAACACcaaacgaaatcgaaatgaagTACGATGAAATTGAGCAAAATACGGAGAGTGTTGTGTTTCACGAAGAATTGAGAACTGATCGTTTTGGTAGTGATAACggagatgatgatgaagaagatgGTGACAGTGATGCCGATTTTCAAGAAGATCATTCGGACAGCGATGAATCATTCAAAGACGATAGCGAAACCATTGAAGATGCCGATGAGGCCGATGAATATACACCGACGAAAgcatacaaaagaaaagatttAGACACCGAACAACCGAAACGAAAGCGAGGCCGACCAAGAAAGTATCGAACACAAGAAGAACGAAAAGAAGCCAATAGACGAAAGGCGCTCAATTGGAGAGCAGGCAAAATTTACAAGTGTCCACATTGTGTGAAAACATTTACTCGTCGAACTCGGATATCCGTTCATATAAGACTACGGCATGGATTCGAATGTGCTGCATGTAATCTCAAGCTTCCGTCTGAACAAAAGCTAaagcaacattcaaaaattcatgaaacagaTTTCGATGCTAAACTTCGTCAAAAACTTAATGAAATAAGTTCGATCGACACGAACGATGTGGAAtcagatgaaaaagaaaagatatgGCAACAATTCGATCGAAAATGTGATGAATGTCCGACTGAGTTTAACGCACTCAATGAAGCACAAGTGCATTACCTAAACgagcataataataataggGGATATATCAAGTGCTGCGACATGAAATTACGCGAAGAACACATGGTGAAGGAGCACATTGCTTATCATAAGAATCCAGAAATATATTACTGTTTCGTGTGTGATTTATCGATCAAAGTGAAATCATATTTGCGAAATCATCTCAAGAACCATATTGTTGATCTGTTGGAAAGTCCAAAATATGTTTGTGATATTTGTAATAAACATTTTGCCACTAAAGCGAATGTAATGTATCACAAGGCTGAAACGCACACAactgaaaaaatcaaatgtgaaatttgtgCGAAAACACTATTTAACGAAGCTCAGAAGGAAAAGCATATGCGAAATATACACGAAACAATGTCTCAACAGCAGCTGGACTATGTGATCAATCATTTTGATATGTCATGTGATCAGTGCGAGGTGATGTTTGAATCGTTTTCACATGCAAAGCGACACTATTTAAGTGAACACAGTGAACCAAAAGGCTACATTAAATgctgtaataaaaaaatgaaaacattggCCGCAATAGACAGTCACATCCAATGGCACCATCATCCAGAGAGTTTAAGGTGTCCAATTTGtgataaattattcaatcTCAAGGATCATTTCAAATGCCATGTTCGCCGTCACAACAAAGTATTTACCTGTGAAGTGTGCGgtaagAGTTTTAAACGGCATACAACACTTGTTGGCCACCGAAAAGCCGTACATGAAAGTGGACCAAGAGATTTTCAATGCAACTTTTGTGGTTTACGGTTCTTAACCGAAGAAAAACGTGATGGTCATGAGCAATTGATTCACTATGGGAATACAACGGGTGCTCGCATTGTTTGTGATGTTTGCGGTAGAGGATTTTCACAAACGAGCCACttacaaaaacacattcaGGCACATCACTCGGATGATCCACAAAAGCGTGCGAAAAAAGATGAGAACAAAAGTGAAATGTGTACAATTTGTGGTTTATGGTTAAGCAGTCGATATCGTTTGAAATTGCATCGCAAATGTCACCCGATCGAACTGAATAGATGTCAAGAATGTGGATTAGAAGCACCAAATCATGACGCGCTACTCGGCCATATCCGAGCATTCCATGAAATTCGGCGCAAACATAAATGCCGATTATGTGACAAATCATTTAATAATGCCGACGAGTTGCAgGAACATTCAACATGTCATGCAACGGAAAAACTCTATCGATGCGTTTATTGCCTGGAAGCATTTGTGTGGAGAAGGAGTCTGGATGCACACATGAAAAAATTACATCCACTTGAATGTGAAGGTGAAAAAGCGACCGAAAGCAAAATTGAAGATCAATCGActtga
- Protein Sequence
- MGSNLGEKCRLCFSTGFFHINLFTTSQRVIESIREIFRSEVDEFDALPNFVCVDCWLKMKTFYEFYQKVIAAQRQFLSDGIVPIKIESDHEEPVFNETNYDDLSIPETPNEIEMKYDEIEQNTESVVFHEELRTDRFGSDNGDDDEEDGDSDADFQEDHSDSDESFKDDSETIEDADEADEYTPTKAYKRKDLDTEQPKRKRGRPRKYRTQEERKEANRRKALNWRAGKIYKCPHCVKTFTRRTRISVHIRLRHGFECAACNLKLPSEQKLKQHSKIHETDFDAKLRQKLNEISSIDTNDVESDEKEKIWQQFDRKCDECPTEFNALNEAQVHYLNEHNNNRGYIKCCDMKLREEHMVKEHIAYHKNPEIYYCFVCDLSIKVKSYLRNHLKNHIVDLLESPKYVCDICNKHFATKANVMYHKAETHTTEKIKCEICAKTLFNEAQKEKHMRNIHETMSQQQLDYVINHFDMSCDQCEVMFESFSHAKRHYLSEHSEPKGYIKCCNKKMKTLAAIDSHIQWHHHPESLRCPICDKLFNLKDHFKCHVRRHNKVFTCEVCGKSFKRHTTLVGHRKAVHESGPRDFQCNFCGLRFLTEEKRDGHEQLIHYGNTTGARIVCDVCGRGFSQTSHLQKHIQAHHSDDPQKRAKKDENKSEMCTICGLWLSSRYRLKLHRKCHPIELNRCQECGLEAPNHDALLGHIRAFHEIRRKHKCRLCDKSFNNADELQEHSTCHATEKLYRCVYCLEAFVWRRSLDAHMKKLHPLECEGEKATESKIEDQST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -