Cnas008925.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:783906-787688[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.3 2.3e+02 2.2 1.2 2 21 232 250 231 251 0.92 2 15 2.4 91 3.5 1.7 1 23 294 316 294 316 0.92 3 15 6e-05 0.0022 18.0 0.0 1 23 420 443 420 443 0.96 4 15 0.82 30 5.0 0.1 1 10 449 458 449 464 0.94 5 15 0.073 2.7 8.3 0.5 1 23 503 525 503 525 0.98 6 15 3 1.1e+02 3.2 1.3 3 20 531 547 529 549 0.89 7 15 0.0026 0.095 12.9 2.6 3 23 556 576 554 576 0.96 8 15 5.3 2e+02 2.4 0.8 1 23 582 605 582 605 0.83 9 15 8.6e-05 0.0032 17.5 1.7 1 23 611 633 611 633 0.98 10 15 0.00036 0.013 15.5 1.0 3 22 641 660 639 663 0.88 11 15 5.3e-05 0.002 18.2 6.0 1 23 669 691 669 691 0.98 12 15 0.26 9.8 6.5 0.1 1 23 696 718 696 718 0.97 13 15 0.0005 0.019 15.1 0.3 1 23 727 749 727 749 0.97 14 15 0.0017 0.064 13.4 3.1 1 23 755 777 755 777 0.96 15 15 0.0012 0.044 13.9 1.4 1 23 783 805 783 805 0.91
Sequence Information
- Coding Sequence
- ATGGAATCTTCTGAAACAACTCTCAAAACACGTATGAGATATTGTTGTGTGAAATCTTGCCCGAATTTTCGTGGAACAACTGACcaacatatttatttcttcaaTCTGCCAATTCGCAACTCACCGGAAGTTCGTGCCCAATGGGAATTGGCTGTTACTGGCAAGCAAACTGGCAACTTTTATTGTGGCAGGATTTGTGAACGTCATTTCAGACCCGAAGATATCCATTCCTACGGACCACGAAAAAACTACTTGAAAGATGGAGCTATTCCCGTGTATCATATCCATGATAATAGCTCAAACGATACACCAGCGGCCCAATTGAAACTTGTCaatattgaaacaattaaaaacaaaacgaatgatACCGAATCGGTTGATGGCATAGTACAAAATCCACCGAAGGATAAATTAAATATAGTCGATATTAATGCGACCACAAACCAAACTAATGGACCCAATTTGGCTAGTAACAAAGTCTCCAAACAGTCGagtttttgtgtaaattgcGCTCAGAAAAACGTACAACTACAAGCggccaaaataaaaattgaatcgttaAAAGCGAAAATACACGATTTGGAaacgaaaaaccaacaacTTCGGAATCAAACCAAAAGACTTGAACCAGGGCCAGCTAATAATAGTATTAGAGAGGACAATCCAATGGAACCGGAGAGTATTGCCACTAAAAAGTGTAGCCTTTGCAAGGTGGTGCTAACACCATCTGAATTCTATAAACATTTATGCCTTGATCAAGATACAATTCAATGTACATTTTGTGTACCAAggaaatcattcaaaataactGCCAATTTTCTGAAACACATTGCCTGCTATCATccggaaatattgaaaaacgTTGATACACGGACATTATACAAATGCAACTACTGTGCAGTTATCTTTCCAATGGAAGTGATGATGAAATGTCATCAAAAATCCCATGAAACCATTACTCAGTATCATCAACAAGTAGAGCAGGTGACTTTCAAAGATGAGTCTGTGGAAACGATGTCAATTGACGAATCGACTTCGGAAAGTGTTTTTGATTTACCCGAATCTTCTTATGTACCTGAGAAAATCTATGCTAAAGAAGAAGCGGATGACGAATTGGGCACTTATTTTGTGTCAGTCAAAGAAGAAGTTGATGACGAAATAATTGAACCAATCGAACCGtcaacatcaaatgaaatgaccatattgaaaaatgatgaagtgAAATCATCAAAAGTAGTGCAACACatcaataaatATTTCAAGTGCGGTATATGTGACATGGCGTTTGAGGAGCCGGTTCAATTGAAAACCCATATACGAGATGAACACTCCATACGTAAACAAttcaaatgcgaaaaatgcAACATGACATTTGGAATGGTAGAGTTAATAGGTTCTCATGTGTGTGATGCAGATTCCAAAATTGAAGAAGcctcaaaatgcaatgaaagCGGTATGGAATTAGAAAAACCACGACAAAAAAGGCGCATTGCAcgtatgaaatattttcaatgctaTCTATGTAAAATTGATATGGATTCTAAAGAGGCGCTTCGGATGCATATGAAGCTACATTCGCGAGACCATCTATGTGACGTCTGTAAAGTGGCATTTACTTTGAAAGAATTGAACTATCATTTGTGCGACAATGAAGGAAGCATTTGTTGTGAATATTGTCAACAAACTTTTACTACAACAATTAAATTGTTAGAACATCTCAAAtcacaccaaaaaaagaagttgTATCGATGTGATGAATGCTTTAAATTACTTCCAATGATCAAACTAAAACAATACCATATGAGACTATCACACACACAGCCAAAATTGTTCACTTGTACAATATGTTCCAAGGCGTTTACAACAAAATCGCTACGAAATATTCACGAAAAATCACACAATGCCGTAAGATcccATCTCTGTGATGAATGTGGACGAGGGTTTCGATCCGCtcgaaatttgaaattacatAAAGAGTCAAGTATGCATGTGGCCGAGGCACTTTTTCAGTGTCCCGACTGTCCACATAAATGCTACAGAAAAGATCAGTTGAAACGACACCGTAAAGTCCATATTCAAGATAGTTTCGTTTGCGAGATCTGTAGCGCCCAACTTCCATCCATGAAAAGTTTATTGGGGCATATGACACGACACACGAGAACTGAGGCCAACCGAAAATATGCCTGCTCACTGTGCccgaagaaatttttttcatcagaaGTATTGAAGAGTCATCAGGCTGTGCATGGTACTGCCAAATTACACGCTTGTCAATATTGTGAACAATCTTTTAAATATGGTGGAGACTTgcataaacatttgaaaatacatcTTGGCGAACTGCGGTATCAATGTGAGAAATGCGACAAACGATTCAAATATAAAGTAGAAGCAGTTAAACATGAATTTGAGCActataaacaagaaaaaagtgaaagaaatgaaattgaatag
- Protein Sequence
- MESSETTLKTRMRYCCVKSCPNFRGTTDQHIYFFNLPIRNSPEVRAQWELAVTGKQTGNFYCGRICERHFRPEDIHSYGPRKNYLKDGAIPVYHIHDNSSNDTPAAQLKLVNIETIKNKTNDTESVDGIVQNPPKDKLNIVDINATTNQTNGPNLASNKVSKQSSFCVNCAQKNVQLQAAKIKIESLKAKIHDLETKNQQLRNQTKRLEPGPANNSIREDNPMEPESIATKKCSLCKVVLTPSEFYKHLCLDQDTIQCTFCVPRKSFKITANFLKHIACYHPEILKNVDTRTLYKCNYCAVIFPMEVMMKCHQKSHETITQYHQQVEQVTFKDESVETMSIDESTSESVFDLPESSYVPEKIYAKEEADDELGTYFVSVKEEVDDEIIEPIEPSTSNEMTILKNDEVKSSKVVQHINKYFKCGICDMAFEEPVQLKTHIRDEHSIRKQFKCEKCNMTFGMVELIGSHVCDADSKIEEASKCNESGMELEKPRQKRRIARMKYFQCYLCKIDMDSKEALRMHMKLHSRDHLCDVCKVAFTLKELNYHLCDNEGSICCEYCQQTFTTTIKLLEHLKSHQKKKLYRCDECFKLLPMIKLKQYHMRLSHTQPKLFTCTICSKAFTTKSLRNIHEKSHNAVRSHLCDECGRGFRSARNLKLHKESSMHVAEALFQCPDCPHKCYRKDQLKRHRKVHIQDSFVCEICSAQLPSMKSLLGHMTRHTRTEANRKYACSLCPKKFFSSEVLKSHQAVHGTAKLHACQYCEQSFKYGGDLHKHLKIHLGELRYQCEKCDKRFKYKVEAVKHEFEHYKQEKSERNEIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -