Cnas000876.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- ZFY
- Assembly
- GCA_009176525.2
- Location
- NW:9266-10564[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00012 0.0043 17.1 3.3 1 23 125 147 125 147 0.98 2 11 1.3e-07 4.8e-06 26.4 0.4 1 23 153 175 153 175 0.97 3 11 1.2 44 4.5 0.3 1 17 181 197 181 202 0.77 4 11 0.18 6.7 7.0 5.0 1 23 208 230 208 230 0.98 5 11 4.2e-05 0.0016 18.5 0.8 1 23 236 258 236 258 0.97 6 11 0.19 7.2 6.9 0.3 1 19 264 282 264 285 0.80 7 11 0.024 0.9 9.8 6.7 1 23 291 314 291 315 0.95 8 11 4.9e-06 0.00018 21.4 1.4 1 23 321 343 321 343 0.98 9 11 3.9 1.4e+02 2.8 0.8 1 19 349 367 349 369 0.77 10 11 1.2 44 4.5 0.6 1 23 376 398 376 399 0.93 11 11 0.00016 0.0058 16.7 0.4 1 23 405 428 405 428 0.97
Sequence Information
- Coding Sequence
- ATGGAAATCAAAGAGGAGAGCATCAAGCAAGAGCCGGAAGATAATGCATCTCTGATTGTATGCCCGACAAAACCATCATCGGTCGAAGCCAGTGTCAATGTTAAATCGGAGAGCGAGAGCGATAGCGAGTATTTGCGCGATGACGTGAAGGAGGAAATGGAATTTGAAGGGGATTGTGTGAAGAAAGAAGGTAACTCCACGAAGGGAGCAGGTTCAAGTAAGGGTGCCAATGATGATCAAGGTGATGTTGGCTTGGATAATGTTAACGGTGAACAGCCCAAGCGTCGTGCAAAAGTCAAGGGACCAAGaagagcaaagaaaaacaacaagacCAAACCTCGGAAAATGTCAACGGAACAGATTAAGAAGTTGCATCGTTGTACTTTTTGCAATTATCTCACACCATATGCATCGAATCTCAAAAGACATATTCGAACTCACACCGGCGAAAAACCATTCGAATGCGAAATTTGCGGGAAGGCTTTTTCACAAAAGTTTGATTTGAATCGTCACAAAATAATCCATGTTCCTGAATTGCCATTTGATTGCTCGAAGTGTCGTCGTAGATTTGCCGAAGAAGTTGATAAAATCAGTCATGAAACCAAATGCAATGGTCGCCAGTTCAAGTGCTACTTGTGCAAATTTACCACTCTGTATTTGAAAGATTTAAAACACCACATGCGAATCCACAGTGGTGAAAAACCATTCGCATGCCGTGTATGTTCGAAGGCATTTGTTAGGCTAAATGAATTGAAGTCCCATTCACGCACTCACCGCCAACAACTTCCATTCGACTGTTCAAAATGTGGTCAACGATTCGCTGCTGAAGACAAAAAACAAGtgcatgaaaataaatgcaagcGTCGCCGATTCGAATGTCATATCTGTCAGATATACAAACGTTTCAATAAAGGTCATTTGAAACTGCACATGCAAGTCCATCACACTGgcgaaaaaccatttaaatgcGGTATTTGTGAAAAGAAGTTTTTCCAAAAGATTGAACTGAAGAAACATTTGGCAACACATGCCAAACAGCGTCCATTCTGTTGCGCCAAATGTCAGCGGCCATTTGAAGAAGAAGTTGATAAGAAGGAACATGAGATAGGCTGCAACCGTCGCCATTATCAATGTTATGTGTGCAAagtttcaatgcaaaaattgcCGCAATTAGTAGGTCATATGGGAACTCATCATATCggtgaaaaaccattttcatgcaatttgtGTGGTGCACGTTTTACACTGAAAGGAAACGCCAATCAGCACATGAAGAATATTCATAATGGAAAGAAGTAA
- Protein Sequence
- MEIKEESIKQEPEDNASLIVCPTKPSSVEASVNVKSESESDSEYLRDDVKEEMEFEGDCVKKEGNSTKGAGSSKGANDDQGDVGLDNVNGEQPKRRAKVKGPRRAKKNNKTKPRKMSTEQIKKLHRCTFCNYLTPYASNLKRHIRTHTGEKPFECEICGKAFSQKFDLNRHKIIHVPELPFDCSKCRRRFAEEVDKISHETKCNGRQFKCYLCKFTTLYLKDLKHHMRIHSGEKPFACRVCSKAFVRLNELKSHSRTHRQQLPFDCSKCGQRFAAEDKKQVHENKCKRRRFECHICQIYKRFNKGHLKLHMQVHHTGEKPFKCGICEKKFFQKIELKKHLATHAKQRPFCCAKCQRPFEEEVDKKEHEIGCNRRHYQCYVCKVSMQKLPQLVGHMGTHHIGEKPFSCNLCGARFTLKGNANQHMKNIHNGKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -