Cnas006939.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:1438212-1448688[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9 3.3e+02 1.7 0.5 6 23 225 242 225 242 0.95 2 14 0.43 16 5.9 1.9 1 23 248 270 248 270 0.93 3 14 4.3e-06 0.00016 21.6 1.4 1 23 276 299 276 299 0.96 4 14 0.2 7.5 6.9 0.0 2 19 309 326 308 329 0.93 5 14 1.2e-05 0.00044 20.2 0.7 1 23 454 477 454 477 0.98 6 14 0.36 13 6.1 0.2 6 23 537 554 537 554 0.98 7 14 0.00017 0.0062 16.6 1.8 1 23 560 582 560 582 0.98 8 14 6.8e-05 0.0025 17.8 1.8 1 23 590 612 590 612 0.98 9 14 0.39 15 6.0 0.9 2 23 627 649 626 649 0.90 10 14 0.00015 0.0057 16.7 1.2 3 23 661 682 660 682 0.97 11 14 0.00042 0.016 15.3 1.4 1 23 692 714 692 714 0.98 12 14 0.04 1.5 9.1 1.4 2 23 720 742 719 742 0.97 13 14 4.9e-05 0.0018 18.3 2.0 1 23 748 770 748 770 0.97 14 14 0.0051 0.19 11.9 0.8 1 23 776 799 776 799 0.97
Sequence Information
- Coding Sequence
- ATGGATTCGGACGAGTGGCTTCAGTGCCGATTGTGTTTTGCAAACGGTCAGAATTATATTGATTTATTCGAGGGAACTGAATATAGTTCATTTGTTACATCGGTGCTGGGCGAGCATATTGCACAGGTAAAGGAAAATGATGGGCTACCGAAATATTTGTGCTGCGTATGTTGGAACAAAACAAgtaaattccattcatttcatcAGGCTGTACAAATTGCTCAGGCAAATTATTTAATGCAATTCGAATCAAAATACGATATCAATGGAATTGAACATGATGATAACCAAAACAATCCCACGAATGATGTTAAATTAccgaatttcattgaaatgccACAAAGTGGCACCGAATTTGATAACGAGAGAATTGATgctgaatttgaaaatgtatttcaagAAATTGAATCACATCCACCCGTTCAAAGTGCAAGCGAATTTTTGACCGAAGTAAAAATTGGCCCTATGTTAGAAAACGAAGAGGATACGGCCgatgaaaatgacattgaaaatggtgaattgaataacaaattagatataaaaaatgagGAATCAAGCGATAAGGCACATTTTGATTACATCTGTGATGTGTGCGGCATTGACCAAATCACATTCGAACAATCACTTTTACATTACAATCATGAACATAATCAAGAAGGATATATCAAAtgttgtggaaaaaaattcttcaaagaATGTACCGTCGACGACCATATCAAATGGCATCAAAATCCAGATATCTTCAAATGTAAAACGTGCGGTGTACAATTGGGCACAAGACGATCATTTTATAAGCACAATAGTTGGCATAATGGACCGCAACGATTCGTATGCGATATTTGCGATCGATCGTTTAATTATAAAGAATCATTGAAGCTTCATATGTATAGATATCATATCAGGGGAAGAAATATTAACGAATCCAAATGTCCAGCATGTTTAACACGGTTTCCAACTCCAAAAACTTTGGAAGTTCATGAGGCGATATGTCGTGGTCCAGATGCCGCCAATGTGGCCAAAGAGCAGCTTAAAGGTTTAAAAGATATCATTTCATCACTGAGTACGGCTGATATTCAACGTGTTGTTGCCGAACATTTTGATATGAATTGTGATTTATGTGGCGAAGATTTTGTTGCAACTTCACTGGTTCAATCACAATTCCACTATATGAATGAGCATCAAGTGGCTGACGGTTATATCAAATGTTGTGATTTAAGACTTAAACATCAGGATCAAATACTTGAACATGTACCATATCATCTAAATGAAAATCTTTGCAAATGCAAAGTGTGTggcaaagaaaagaaaacaattcgCCGAATTCGTTCACATTTGGAATTGCATATGAAACGTGGTAGCTATCGATGTAAAGAGTGCAACGCAACATTCGTGCGTGAAACTTATTTGATAATCCATATGAATCGAAATCATGTGAAAGTAAAACGGTCAAAACCCACATTCACCCACGAAAATCGGCCAGATCCACAGGAATATTTCGATATGCGTTGTGATCATAGCGAATGCTCAAATGTCCTATTTACATCGTTGCAACATGCAAAATTGCATTATATGCAAGAGCACGGAAATCCAGATGGATACATTAAATGCTGCAACATAGTTTGTAAAACCAGCTCCGAAGTGGACGACCACATGCGATTGCACATAAATCCAAATCATTTCAAGTGCAATTACTGTGATAAATTATTCACCACAAGAAAATCGCTCATACCACACATTTCAAAGCACAAAGCAAAAGAGTCAAAACTTTACAGTTGCAACGTGTGCCAAAAATCGTTTGCATCAAATCATGATGTAAGAGTGCATGCTAAAAAACATGAGGAGAAAATCATCGATGACAAGAAGGACGAACCAAAAATTCCATGTTCGTTCTGTTATCGCAAATTCAAAActgaagaattgaaaaaatcacacgAAGATCGTATACACTTGAAAATATGGAATGATGATCGGCAGGAgatttgtgaattttgtgcCAAACGATTTAAAGCAAAATCCGATCTTAAAACTCATATTCGAAGAATGCATACATCAAATGATAAACCGCAACAAGTATTCAAATGCGAAATTTGTAATACATCGCTGACAAATCAGTATATACTTAAAACGCATATGCTGAAGCATTCATCAGATCCACAGAAATGTCCGCATTGCTATAAATTGTCACCGAATGAAAATGCACTAAGTCAACACATCAAAAAGAATCATCTGGCCAAACCCATTCACAAATGTACCATATGCGAAAAATCATTCAAGGATATTACATCACTTAAGaGTCACACTGCCATACATACGggtgaaaaaatgtttcgatgtTCGTATTGCCCCGAAGAATTTATATGGAGATCGAATATGTATGTtcatcaaaagaaaatgcatcCGGCCGAATGGTCCGAGCGAAAAAATCGTCGACAAACtattgtaaaaaattaa
- Protein Sequence
- MDSDEWLQCRLCFANGQNYIDLFEGTEYSSFVTSVLGEHIAQVKENDGLPKYLCCVCWNKTSKFHSFHQAVQIAQANYLMQFESKYDINGIEHDDNQNNPTNDVKLPNFIEMPQSGTEFDNERIDAEFENVFQEIESHPPVQSASEFLTEVKIGPMLENEEDTADENDIENGELNNKLDIKNEESSDKAHFDYICDVCGIDQITFEQSLLHYNHEHNQEGYIKCCGKKFFKECTVDDHIKWHQNPDIFKCKTCGVQLGTRRSFYKHNSWHNGPQRFVCDICDRSFNYKESLKLHMYRYHIRGRNINESKCPACLTRFPTPKTLEVHEAICRGPDAANVAKEQLKGLKDIISSLSTADIQRVVAEHFDMNCDLCGEDFVATSLVQSQFHYMNEHQVADGYIKCCDLRLKHQDQILEHVPYHLNENLCKCKVCGKEKKTIRRIRSHLELHMKRGSYRCKECNATFVRETYLIIHMNRNHVKVKRSKPTFTHENRPDPQEYFDMRCDHSECSNVLFTSLQHAKLHYMQEHGNPDGYIKCCNIVCKTSSEVDDHMRLHINPNHFKCNYCDKLFTTRKSLIPHISKHKAKESKLYSCNVCQKSFASNHDVRVHAKKHEEKIIDDKKDEPKIPCSFCYRKFKTEELKKSHEDRIHLKIWNDDRQEICEFCAKRFKAKSDLKTHIRRMHTSNDKPQQVFKCEICNTSLTNQYILKTHMLKHSSDPQKCPHCYKLSPNENALSQHIKKNHLAKPIHKCTICEKSFKDITSLKSHTAIHTGEKMFRCSYCPEEFIWRSNMYVHQKKMHPAEWSERKNRRQTIVKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -