Cnas004640.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Contarinia nasturtii
Gene Symbol
L
Assembly
GCA_009176525.2
Location
NW:6118953-6148235[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00011 0.0039 17.2 3.5 1 23 182 204 182 204 0.97
2 16 0.67 25 5.3 5.7 1 23 210 232 210 232 0.98
3 16 1.8e-06 6.7e-05 22.8 4.0 1 23 238 260 238 260 0.99
4 16 1.7e-05 0.00062 19.7 0.2 1 23 266 288 266 288 0.99
5 16 0.059 2.2 8.6 0.4 2 23 400 422 399 422 0.96
6 16 0.63 23 5.3 0.2 2 23 565 586 564 586 0.96
7 16 0.00044 0.016 15.3 0.6 1 23 595 617 595 617 0.97
8 16 0.00029 0.011 15.8 2.5 1 23 625 649 625 649 0.93
9 16 0.83 31 5.0 0.6 1 23 684 707 684 707 0.93
10 16 0.00011 0.0042 17.1 1.1 1 23 743 765 743 766 0.96
11 16 2.7 1e+02 3.3 0.3 2 23 937 960 936 960 0.90
12 16 0.00092 0.034 14.2 0.5 2 23 969 991 968 991 0.96
13 16 0.0044 0.16 12.1 0.1 1 23 996 1018 996 1018 0.98
14 16 0.046 1.7 8.9 0.2 1 23 1147 1169 1147 1169 0.95
15 16 0.026 0.98 9.7 1.2 1 23 1179 1202 1179 1202 0.97
16 16 0.0028 0.11 12.7 0.5 1 23 1209 1231 1209 1231 0.96

Sequence Information

Coding Sequence
ATGAATGGTTTCAATGATGAAGTCGAAATGAATAGCAATAACAACAGCGATGAGAGCAACGACAGTGACGAAATAAGCTATAGTTTTTACTCAGATATTGACTCATCAAATACATCACCAAGCTATTCACCATCACTTCCTGACATGGCATCAACTCCAAATTTCGAAGTGGATAATATTCTTAGcattaataacaataataaaatcacagcgaaacaacatcaacaacagcatcatAGTGAGTACACTTCTTTCGAGAACGGCGGCATAAATGAGAACATATTACccgaatcgaatgaaaagcATGGCGAAGAAATAGCACCAACATTGAAAGATGCTCAACGTTTGTCGTCTGAAGCAGGGGTTGCCTACGCGCCGATTAACAACACTTTTAAACCATCGTCAAAAATACATAGCAAACAACCAACGATGACAGCAACTAAGAGCAAAGGGGAAGGTAGCCGACTTGCAAAATATGGTAAAATTAATGGAACAACACCACAATTACCGTCAAACGCGACTAATAATAACGTCGAAGGCTCTTATCATTGtcaattttgtgataaatcgTTTCCACGCCTGGGATATCTTAAAAAACACGAACAGAGTCATGCAGAGCACATgccattcaaatgtgaatattgCGCACGATTGTTCAAGCACAAAAGGTCACGGGATCGACACACAAAACTACATACGGGAGATCGGCGCTACCGCTGTCCGCATTGTGAATCAGCTTTTTCAAGAAGtgatcatttgaaaatacacatGAAGACGCATGACAATCAAAAGCCGTTTCAATGTACGGTTTGTAATCGAGGCTATAATACGGCTGCTGCGCTTACATCACACATGCAAAGCCACAAAAAGCAAGCAGCTCTTCAGAGAAATACTACATTGAATTACAGCCCACGATCCACAGGTTCGGCTTCGAGTAACACCAGTCTGTACAAACGAAAATACTCATCACAAATTGAGCAACGAGATATCCCAAATCAGTCATCACTTTTGGCAGTCAATGCAAAACGTTTTGCATTTCACGGCAACAACAGCTCTGTCTTATACTGCATCTACTGtaccaaaaatgattttgaaaatttggaGCAACTACACTCGCATGTTCAGCAAATGCATGCAATTGTCTTGAGAGAGaCAACATCAAGCCCCTTTCCTGGCATCCATCCTGGTCTTCATTTGACTTGTGAATTTTGCACGATGAAATTTCCATCAATTCCCAGTATGTTTCAGCACATTCGTTCAATGCATATAGATCGTATAAGCAATCCAACGTCTTACATGGAGCACTTAAGCAGACGATCAATTGGACTTGGTGATGAAAACTATCGCCGTAAATCAAACGATAGTTTTGTCCATCCACTTGAACGTTCCAAATCGGAAGAGGATTCCcataaatatgaattaaacCCATCAAAAACGGAACGTGACACACCGAGTAAAAATTCCAACGATTATGATGCGCATACAAAGtccattgaaaatggtgaCATAAAGCAAGAAGATCTTCCAACTGATTTAAGTAATAAAAAGATCGAGGCAAAATGTTCCGAAATCCGCgatgattcaaatgatatgAATCATTCGTCGAAAGAAAGTTCCATCGATTCCATTGTGAATCGAAAACGTCTTCAAAAAACGTCGCCAGATTATTCAGCATCGAGTCCGGATCCATTGCGATGCAGCCAATGTACATTGATACTTCCGAACATCGAGGCGTTTCGCGATCATTTGCGAAATCATTTAGTGCGTGGTGAACTGAAAAATTTTGTCTGTTTCCAATGCGGACTCACATTCaccaatcaaaatgaatatgaattgCATGTTTCGTCGCATTTTCTAATCAGCACCACCGAATATACATGCACATTTGGAtgtaataaacattttgttaGCTCTGAAAATATGCAAAAGCATATGTTCGATGTGCACGCTCAAAATGTGTGGAAGTGTGGCATTTGCTATGACATTTTTGAATCCAAAgttgcaattcaaattcattttgcgATGACCCATTCGAATAAAGAGGACACATTTCGTTGTTCGGCATGTATGGATTCCTTTGAAacggaaaatgaatttaaggCTCATGTTCGGACCCAACATTCGTTGATGTTTTTATTGCCAAATTTGCAATGCTCTCTGTGCCGAACAGTTTGTTCATCTGAATTAGAAATGCACTTTCATATGGCAACACATTCGCGTCAACCATTCCGATGCACCGTATGCTCTGAAGCATTTCCAATGGAATTTCTATTGGAACGACACATGCAAACGCATCATTGTCTTCCCGAAAAGGATGCATTGGGACTGTATAAAAGCGATAATCTTAACAATAATATGTTCGACTATAGCTATGCCGCAAAGAAACTCTATCCATTTGCTGGACCGACCAAAATGTTTGATCCCATGAATATACCTTCCAGTTCAACGTCACCACTGAAATTACCACCGCCACTATATGAACTTTATGATAACATTGGGAAATCATTTTCGCAACAaagttttacaaaaaatttttcaaatataaccAAATCATTTTCGGAACACTTAGAAAATACACAAGCATTTACGAAACAATTTAGCGAGCACTCGGCCGAGATTCCAtcgtttttgaatttatacaAATCGGATTATGTgtcgaaaacatttttgagaAATAATCCATTGGTTTTTTTGCCACCAACTTCAATCGATTCACACAATGGCACTTCAGAACAACAGCAACCACCAGCACCACCgccgcaacaacaacaatataccGATAAAAAGACTTCTTCCGATCAACAAATATCATGCAACATTTGCGATCGCAAAGATTTCCAAAGCGAATTGGAAATGATAACGCATCAAAAGATTACACACAACATCAAAACCGGCGTTAGCCTAATGTGCGCCTATTGCAATGACAATTTTCGTTCAAGAACCGAATTGGAAACTCATATGAAAACGGCGCATACCGGAGGTAAACACAAATGTTTAATTTGTGATGAAATTTTTCCATCGGCAGATGTGCTTGCTGAGCACAAGCTAACTCATTCTAGAGTTGGTGTCCAAGGCAAATGTACATTTTGCTCTGCAAATTTAATGGATATTCAAGAATTCAAGTCTCATATGGCTGAGCATGGAAACGTTGAATTGCCAGTACAATGTATTTGTTGTCGTCAAACTTTAAGTTcagcatttgaaattcaattacacGCTAAATTCCATGTGAGTTCCACGTCCGGTGATAGTGACAACGAACGCAATTGTGCACTGTGTTTAATCGAGCTACCGCCAAAATCTGAATCGAAAGTATGCAAAAAGTGCTatgaaaaacacaacaatCACAGTAAACATTCATCGTATGCATTTCCAAAGGAAAGCAATTCATTTTCCAGTGACTGTCCATCCAAATCGAATGCCGACTCAATAACGGAGCATTACTgcaatttatgtaaaaaaccatttttgacGGCGGTCGCATTAGAAGAACATTTAATTGAACACTCATTTCGAGGTTGTGAAGAACGTGGCTACAATTGCTATATATGTTCGGCAATTTTCACTCTGCCATGTGGACTACATCAACATATCAGAGTTGAGCATGGTGCAAGCTATCGTCCATATGACTGTAATCTGTGTGCAAAGAAATTCTATTTTCGAGCTGAACTTGAGAATCATCTGATCAATCATGAAATTGGCCTTATTGCAACGCCACACCGAGATGATGCGACGGACACAGATGAATCGAaacaaattccattgaatCACGAACATTTGAAAGATATGAACGATGATAATGAAAGCGACAAGGACAAACATTCCGAAACGGATATGAAATCCGAAGGTCAACATTATTCCAATGATGTCAATGCGGaagacgatgacgatgaataCATCGAAGTTGAACAAATCGGTGAAAATACATCTGCCGATGAAGAGATGAGCCAGccaaatgaacgaacaagTCCAGAAAATTATGATAAACCACAAACACAATATGAAAAAGATAATTTAAGCTATAGagtgtaa
Protein Sequence
MNGFNDEVEMNSNNNSDESNDSDEISYSFYSDIDSSNTSPSYSPSLPDMASTPNFEVDNILSINNNNKITAKQHQQQHHSEYTSFENGGINENILPESNEKHGEEIAPTLKDAQRLSSEAGVAYAPINNTFKPSSKIHSKQPTMTATKSKGEGSRLAKYGKINGTTPQLPSNATNNNVEGSYHCQFCDKSFPRLGYLKKHEQSHAEHMPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQSHKKQAALQRNTTLNYSPRSTGSASSNTSLYKRKYSSQIEQRDIPNQSSLLAVNAKRFAFHGNNSSVLYCIYCTKNDFENLEQLHSHVQQMHAIVLRETTSSPFPGIHPGLHLTCEFCTMKFPSIPSMFQHIRSMHIDRISNPTSYMEHLSRRSIGLGDENYRRKSNDSFVHPLERSKSEEDSHKYELNPSKTERDTPSKNSNDYDAHTKSIENGDIKQEDLPTDLSNKKIEAKCSEIRDDSNDMNHSSKESSIDSIVNRKRLQKTSPDYSASSPDPLRCSQCTLILPNIEAFRDHLRNHLVRGELKNFVCFQCGLTFTNQNEYELHVSSHFLISTTEYTCTFGCNKHFVSSENMQKHMFDVHAQNVWKCGICYDIFESKVAIQIHFAMTHSNKEDTFRCSACMDSFETENEFKAHVRTQHSLMFLLPNLQCSLCRTVCSSELEMHFHMATHSRQPFRCTVCSEAFPMEFLLERHMQTHHCLPEKDALGLYKSDNLNNNMFDYSYAAKKLYPFAGPTKMFDPMNIPSSSTSPLKLPPPLYELYDNIGKSFSQQSFTKNFSNITKSFSEHLENTQAFTKQFSEHSAEIPSFLNLYKSDYVSKTFLRNNPLVFLPPTSIDSHNGTSEQQQPPAPPPQQQQYTDKKTSSDQQISCNICDRKDFQSELEMITHQKITHNIKTGVSLMCAYCNDNFRSRTELETHMKTAHTGGKHKCLICDEIFPSADVLAEHKLTHSRVGVQGKCTFCSANLMDIQEFKSHMAEHGNVELPVQCICCRQTLSSAFEIQLHAKFHVSSTSGDSDNERNCALCLIELPPKSESKVCKKCYEKHNNHSKHSSYAFPKESNSFSSDCPSKSNADSITEHYCNLCKKPFLTAVALEEHLIEHSFRGCEERGYNCYICSAIFTLPCGLHQHIRVEHGASYRPYDCNLCAKKFYFRAELENHLINHEIGLIATPHRDDATDTDESKQIPLNHEHLKDMNDDNESDKDKHSETDMKSEGQHYSNDVNAEDDDDEYIEVEQIGENTSADEEMSQPNERTSPENYDKPQTQYEKDNLSYRV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-