Basic Information

Insect: Contarinia nasturtii
Gene Symbol: -
Assembly: GCA_009176525.2
Location: NW:1664806-1666958[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.084 3.1 8.1 0.6 1 23 8 30 8 30 0.95

2 14 1.1e-05 0.00042 20.2 0.3 2 23 151 173 150 173 0.95

3 14 0.0011 0.041 14.0 0.5 1 23 179 203 179 203 0.95

4 14 2 76 3.7 1.4 1 20 210 229 210 229 0.92

5 14 0.0035 0.13 12.4 1.2 1 23 286 309 286 309 0.89

6 14 7.9e-05 0.0029 17.6 0.5 1 23 315 339 315 339 0.96

7 14 3.4 1.3e+02 3.0 0.6 1 20 346 365 346 367 0.86

8 14 0.011 0.41 10.8 0.7 2 23 432 454 432 454 0.96

9 14 2.7 99 3.4 0.0 6 20 459 473 458 475 0.93

10 14 0.0013 0.049 13.8 3.3 1 23 493 516 493 516 0.97

11 14 0.02 0.73 10.1 3.5 1 23 523 546 523 546 0.91

12 14 5.9 2.2e+02 2.3 4.9 1 23 552 574 552 574 0.87

13 14 2.6e-05 0.00096 19.1 0.3 1 23 580 602 580 602 0.99

14 14 3e-05 0.0011 18.9 1.4 1 23 608 633 608 633 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.084	3.1	8.1	0.6	1	23	8	30	8	30	0.95
2	14	1.1e-05	0.00042	20.2	0.3	2	23	151	173	150	173	0.95
3	14	0.0011	0.041	14.0	0.5	1	23	179	203	179	203	0.95
4	14	2	76	3.7	1.4	1	20	210	229	210	229	0.92
5	14	0.0035	0.13	12.4	1.2	1	23	286	309	286	309	0.89
6	14	7.9e-05	0.0029	17.6	0.5	1	23	315	339	315	339	0.96
7	14	3.4	1.3e+02	3.0	0.6	1	20	346	365	346	367	0.86
8	14	0.011	0.41	10.8	0.7	2	23	432	454	432	454	0.96
9	14	2.7	99	3.4	0.0	6	20	459	473	458	475	0.93
10	14	0.0013	0.049	13.8	3.3	1	23	493	516	493	516	0.97
11	14	0.02	0.73	10.1	3.5	1	23	523	546	523	546	0.91
12	14	5.9	2.2e+02	2.3	4.9	1	23	552	574	552	574	0.87
13	14	2.6e-05	0.00096	19.1	0.3	1	23	580	602	580	602	0.99
14	14	3e-05	0.0011	18.9	1.4	1	23	608	633	608	633	0.97

Sequence Information

Coding Sequence: ATGGATGAAATAATAAGAGTTCatcaatgtttgttttgtccGCAAACATTTGGAAGCGCCAGCGAAAAAGATGATCACATTCTACAGCATTTTGCCCAAGAAACATGCATCGAATGCGACCAAAATTTGATTCGTATCGGTAATAATTTGTACACTAAGCACAATGCAGTAACGTGTATCAAAGTGAACATCAAAACAGAAGACCCAATTTACCAAGAGGACCAACATGAAACCATCGACGAAAAAATAGATGAACATGGTTTTACAGCGGTCACATCTTTGGATTCAATGTTAGCCGTCGAAATAAAACCCGATTTAATTGCTTTGAATGAACAACTTATGCTTGCCAATGAGAATAGTTTGGTAGAGAATTGCGAATATGAACTCGACTCAACTGATGCATCTGAAGCCGCATCTGAAGCGACAAGTaacaatgataataaatgcaatgaatgTAATATATGCGGCAAAATGCTTTCATCCAAAGACGGCttgaaaaaacacatatcAATCACACACAGCGCTCCTGGCCATTTTCCGTGTGAAATATGTCCGAATTTGGTTTTCACGCGAAAGGATTCATTGCGAAAgcacaatcaaatgaaacatgaTCCAAATACCGTTAAATTCAAGTGTAATTTTTGCCAGAATGTATTTTTGCATGAATTATCACTAGAGAAACATCTTCCGAAATGTAAAAAACGTATTAAGAAGACAAGATTCGCTCTAAATCAAGAATATACGcttgaaaatcaattgtacGGAGCCAGCGTTTTTCCTACTGAACAAATGtctcattcaaatcaattagCAGAGCCAACGGGTGAATCGACAAGTCAGGATGATAGTGATTTATGCAAGTGTAATATATGCGGCAAAATACTTTCAAACATCAGATCGCTAAAAGTACACGAAACGCTTACGCATAGTGCCCCCGGCCATTTTCCATGTGAAATATGTCCAAATATGATATTCACGCGAAAGGACTCATTGCGAAAGCATATGCAAATGAAACATGATCCGAATTGTGTCAAATACAAGTGTAACTTTTGCTCTTCGGTgtttttgaaagaaatatCTCTCGAATCGCAtctttttaaatgtaataaaagAATGAAGCGTATGGAAGGTGAGTTATCTACCGTAATTTCTGAAGATATGTGCACTGTTCAAATTAAGGAGGAAGACACCGGCGATTATTCAGAGAATACAATCTGCACGCCGAGCATAGAAATTGGATCAATAACACAAAACGAACATTCTAGTGTGACGAATCCAAATGGCAACGACAACGAATGTGACATATGccttaaaacatttttcgacaaaaacGGAGttcaacaacataaaaatcgCGTGCACAGTGTTTGTGCTTGTACGAAAATTTTTGCCACAGCTGAAGCCCTTGCCGAACATAAGGCCATATGTGAGTTCAAAAAGAGATCCAGAGTTCCATTGATATATTTAGGCAAAACTTTTGAATGTCATTTGTGTCATAGAGTTATTAAAGACATAGTCTCCCTTCGCAAACACATGCTGCGAAAACATTTTCCATGTGAAAAGAAACACAACTGCGAAAAGTGTGGAAAACGTTTCTTACATCTATATGAACTTCGCAATCACAATGAGTCGGTTCActtaaaaattcgaaaatatttgtgCACATCATGTGGAAAATCCTTTTTGTGCGACCAGGCACTACGGATACATATGAATAAACATACAGGAGAAACTCCATATAAATGTCCACTTTGTGAGAAAGCATTTTCTAATCCAACAGTACGAAATATGCATATACGGACTCATACGgaagaaagaaattttaaatgcCCATATGAAGGATGCGACAAACGATTTAAGACTCCAGCCAATGTTTATAagcataagaaaaaaatgcatggcTATAAGAAAAAGGAACAATCTAAAGACACatga
Protein Sequence: MDEIIRVHQCLFCPQTFGSASEKDDHILQHFAQETCIECDQNLIRIGNNLYTKHNAVTCIKVNIKTEDPIYQEDQHETIDEKIDEHGFTAVTSLDSMLAVEIKPDLIALNEQLMLANENSLVENCEYELDSTDASEAASEATSNNDNKCNECNICGKMLSSKDGLKKHISITHSAPGHFPCEICPNLVFTRKDSLRKHNQMKHDPNTVKFKCNFCQNVFLHELSLEKHLPKCKKRIKKTRFALNQEYTLENQLYGASVFPTEQMSHSNQLAEPTGESTSQDDSDLCKCNICGKILSNIRSLKVHETLTHSAPGHFPCEICPNMIFTRKDSLRKHMQMKHDPNCVKYKCNFCSSVFLKEISLESHLFKCNKRMKRMEGELSTVISEDMCTVQIKEEDTGDYSENTICTPSIEIGSITQNEHSSVTNPNGNDNECDICLKTFFDKNGVQQHKNRVHSVCACTKIFATAEALAEHKAICEFKKRSRVPLIYLGKTFECHLCHRVIKDIVSLRKHMLRKHFPCEKKHNCEKCGKRFLHLYELRNHNESVHLKIRKYLCTSCGKSFLCDQALRIHMNKHTGETPYKCPLCEKAFSNPTVRNMHIRTHTEERNFKCPYEGCDKRFKTPANVYKHKKKMHGYKKKEQSKDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -