Cnas007507.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:1427676-1430968[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0031 0.12 12.6 1.7 1 23 247 269 247 269 0.98 2 17 0.0008 0.03 14.4 0.2 1 23 275 297 275 297 0.98 3 17 0.036 1.4 9.2 5.3 2 23 302 324 301 324 0.94 4 17 0.054 2 8.7 0.6 2 23 360 382 359 383 0.93 5 17 1.8 65 3.9 0.1 6 23 392 409 392 409 0.95 6 17 0.0014 0.053 13.6 1.2 1 23 415 437 415 437 0.99 7 17 2.8e-05 0.001 19.0 6.8 2 23 447 469 447 469 0.95 8 17 3.6 1.3e+02 3.0 0.5 2 23 495 517 494 517 0.92 9 17 1.8 69 3.9 0.2 6 23 527 544 527 544 0.98 10 17 9.3e-05 0.0035 17.4 0.2 1 23 550 572 550 572 0.97 11 17 0.0025 0.092 12.9 1.0 1 23 580 602 580 602 0.98 12 17 0.0055 0.21 11.8 1.8 1 23 610 633 610 633 0.93 13 17 0.00021 0.0077 16.3 0.6 3 23 644 665 643 665 0.97 14 17 0.064 2.4 8.5 0.6 2 23 676 697 676 697 0.96 15 17 0.47 18 5.7 2.1 2 23 703 725 702 725 0.92 16 17 2.6e-05 0.00097 19.1 1.0 1 23 730 752 730 752 0.99 17 17 0.042 1.6 9.0 0.4 1 23 758 781 758 781 0.97
Sequence Information
- Coding Sequence
- ATggcagaaacaaaaatatgtcgCTTGTGTATTTCATCATCAACTCAATTGTTGGACATTTTCGATGATTCCGATACGAGCTTAATCGAAATTCTAAATGAACACATTGGCGAGGTATGCAAAACAGATGCATTACCAAAATGGATTTGTTGCAATTGTTGGGATAAAATCGAAGAGTTTCATCGATTTCACCGGTTTGTACGTAATGCACAGGAAGATTATTTGAAGCAAATCGTTAAATACGAGGAAGAGAATGACATCGAAAGTAATTGCCGTGACATTTCTGAGCAAACGAATTTCGTTGAGGTTATTTCGAATTACGATGAACTAAATGAATTTGTCGATGAACTTTCAACAAAATCCGATGCGCTCGATGACACCGATGAAAAACCAACCAAATCCGAAACTACGGAATCGGAATTTCCGGATGTTCTTTTTAATGCTGGCGCAACAACGGCCGAAGAAACTGCTCTTCGACAATTAACGGaaTTAGAATGTGATTCCATCAGTTCTACATCATATGACATTGATTCGATGAGAAGTAAGgaaattttcgatgaaaactTTGACACGACATGTGACATCTGTTCCATCGAACTGAAATCGCTGAGGCGTGCAATCAcacattataaaaatgaacaccAAATTGATGACGGTTACATAAAATGTTGCGGACTCAAGTTGAAACGTGATAAATTGGTCGCCGACCATATTAAATGGCACGAATATCCCGAAATGTTCAAgtGTAAATATTGTGATcgaataatgaaaacaaagttGTCATTGTCGACGCACATAGCCAAACATAGACATGCAAAAAGTTATACGTGTGACATATGCGACAAAATATTTCcagaaatcaataaaattcgtGAGCACATGATGCGCCATTCAAACAACTTGACGTGTCACATATGCTCGAAATTATGTACGTCCAAGGAAAAGCTCGAATCACATTTGAAGTTTTATCATAAGCACGACGAGGTGCGTCGCCAATGGAATACAATGCTTGAGGCCAAAAAGATGACACTAGACGCAGCTGAAATCGATAGAGTGATTGCGAACCAGTTCGATATGAAATGTGATTATTGTGATGTAATATTTAAATCACTGCAAGAAGCACAATACCATTATATGGAGGAGCATCACATCGCCGAGGGATACATTCAATGTTGTGGACTAAAGTTCAAGAGAGCCATGAACATCCAGGGTCATGTGTTGTGGCATTTAAGACCGGACCTCTTcaaatgttgtatttgtaaGAAGGATAGCACAACGATAATTGCATTGCGAGCACATTTACGTGTGCACGAGGCACGATCAACACCtcaacaaaatgtttgcaaagaatgtaataaaacatttttcagcAAACATCATTTGACTAGACACATGAAATTGTCACATGgcatcgaaaaaaagaaactatcGACAAATACCGTTAATCCAGATTCAAATAGCATAAAATTGTACTTCGATATGAAAtgtgaattatgtaaaattgaAGTGTCCTCATTGCAACATGCCAAACTCCATTATTTAGAAGAGCATGACATTCCCGATGGCTACATAAAATGCTGTGACATGAAATTCAGAGAACTTAAAAATATTAACGATCATTTACAATACCATATGAATCCAAGCATTTTCAAATGCGAAATTTGTATGAAGGTGTTTCCACGAAAGGCCGATTTAAGTGCGCATCTATCGCAACATAAAGCGTTCGATACAAAACGTTTTACATGCAACGAATGTGGCAAAGCATGGAAATCAAAATACCGATTAGATGTTCATAAGAGATCTCACGAAGAAAAAACTGCACGAAATTTCCCATGTGATTATTGCAATAGAAAATTCTCGACTGAAACGCTAAAAAAATCTCACGTGTTTCGCATTCATGAGTCAAACAAAGAAGCGAAAACGGAGATTTGCGAATACTGTGCGAAGACATTCACGACACGCAAGGAAGTTTTGTCTCACATACGAAGTATGCAtatggaaaattcaatacGACGCGAACGTGCACAATGCCAGATTTGTAGCGCATGGCTCAGCAATCGATACACACTCAAAGATCACATGATGCGGCACAATTCTGAACCACAGAAATGCTCACAATGTGATAAAATTTCACCCAACCAACATGCATTACTATGCCACGTGAGAGAAGTCCACTGTGAAAGAATATACCGATGCCATTTGTGCGAGAAAACATTTAAAGCAGCTGTTGCTCTGAAGgatcacatttcaacgcataCCGGTGAAAAGACgtataaatgttcattttgtcCCGAGGCTTTCATATGGCGGCCAAATATGTATAGTCATCAGAAAAAGGCACATCCAGAAGAATGGAAAAAGACCAAGAGTGAAGTACGAAGACGAATCAACAGAAATTGA
- Protein Sequence
- MAETKICRLCISSSTQLLDIFDDSDTSLIEILNEHIGEVCKTDALPKWICCNCWDKIEEFHRFHRFVRNAQEDYLKQIVKYEEENDIESNCRDISEQTNFVEVISNYDELNEFVDELSTKSDALDDTDEKPTKSETTESEFPDVLFNAGATTAEETALRQLTELECDSISSTSYDIDSMRSKEIFDENFDTTCDICSIELKSLRRAITHYKNEHQIDDGYIKCCGLKLKRDKLVADHIKWHEYPEMFKCKYCDRIMKTKLSLSTHIAKHRHAKSYTCDICDKIFPEINKIREHMMRHSNNLTCHICSKLCTSKEKLESHLKFYHKHDEVRRQWNTMLEAKKMTLDAAEIDRVIANQFDMKCDYCDVIFKSLQEAQYHYMEEHHIAEGYIQCCGLKFKRAMNIQGHVLWHLRPDLFKCCICKKDSTTIIALRAHLRVHEARSTPQQNVCKECNKTFFSKHHLTRHMKLSHGIEKKKLSTNTVNPDSNSIKLYFDMKCELCKIEVSSLQHAKLHYLEEHDIPDGYIKCCDMKFRELKNINDHLQYHMNPSIFKCEICMKVFPRKADLSAHLSQHKAFDTKRFTCNECGKAWKSKYRLDVHKRSHEEKTARNFPCDYCNRKFSTETLKKSHVFRIHESNKEAKTEICEYCAKTFTTRKEVLSHIRSMHMENSIRRERAQCQICSAWLSNRYTLKDHMMRHNSEPQKCSQCDKISPNQHALLCHVREVHCERIYRCHLCEKTFKAAVALKDHISTHTGEKTYKCSFCPEAFIWRPNMYSHQKKAHPEEWKKTKSEVRRRINRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -