Basic Information

Insect: Contarinia nasturtii
Gene Symbol: salm
Assembly: GCA_009176525.2
Location: NW:8082383-8100214[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.2e-06 0.00027 20.9 0.9 1 23 395 417 395 417 0.98

2 9 1.9e-05 0.00071 19.5 1.9 1 23 423 445 423 445 0.98

3 9 0.5 19 5.6 4.2 2 23 746 767 746 767 0.97

4 9 1.9e-07 7.1e-06 25.8 1.4 1 23 773 795 773 795 0.98

5 9 0.00036 0.013 15.6 3.2 1 23 805 827 805 827 0.98

6 9 0.0034 0.12 12.5 2.5 2 23 1070 1091 1069 1091 0.97

7 9 0.0036 0.14 12.4 0.5 1 20 1097 1116 1097 1119 0.80

8 9 4.2e-05 0.0015 18.5 6.4 1 23 1335 1357 1335 1357 0.96

9 9 8.6e-07 3.2e-05 23.8 0.2 1 23 1363 1385 1363 1385 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.2e-06	0.00027	20.9	0.9	1	23	395	417	395	417	0.98
2	9	1.9e-05	0.00071	19.5	1.9	1	23	423	445	423	445	0.98
3	9	0.5	19	5.6	4.2	2	23	746	767	746	767	0.97
4	9	1.9e-07	7.1e-06	25.8	1.4	1	23	773	795	773	795	0.98
5	9	0.00036	0.013	15.6	3.2	1	23	805	827	805	827	0.98
6	9	0.0034	0.12	12.5	2.5	2	23	1070	1091	1069	1091	0.97
7	9	0.0036	0.14	12.4	0.5	1	20	1097	1116	1097	1119	0.80
8	9	4.2e-05	0.0015	18.5	6.4	1	23	1335	1357	1335	1357	0.96
9	9	8.6e-07	3.2e-05	23.8	0.2	1	23	1363	1385	1363	1385	0.97

Sequence Information

Coding Sequence: atgatccAATTTGAAACCGTCAAATAtggaatattgaaaaaaaccaaggataatcaaaaaatgtcaaaagGTGACAGTACAAGTTCCTGTTCCGAGGAAGATGTTTTATTGCCTGAAACAAATACATTGACTGATGAGTCGTGTGCAAATATGTCGAGCACGGAGCTTATTGAAAGTGAAACGACATGCACCGCCACTGCCGCTATAGACGAACGTAAACAATTAGATAAAGACAGTGCATCGGATGGTGAAATGGACACAGAAACACATCACAGTTCCGAtgaaaatttagaaaataatacaacaaatGGACTGGCATCAAGtaacgatgacgacgatgttACAAAAATGTCCAAACACAATGAAGACGCTGCAAATAACAATAGCAACGAACAAGATGCagacgatgatgatggtaCTGAAAAATCAGacacaaaaaatgagcaaTCACTTGATAATGGTTTCGGTGCGGCGGCCGGTGGTGGATACTTTTCGATGGAAGCCATTCAAAAGATGGCACAATTAGTATCAGCTGCAATGACCAATAACAGTGATAACGAAGATGCACAAAAGCAATTGACATTGTTGCAGTCAACATTGTTCACATTGCAGCATCAGCAAttgtttcaaatgcaattgattCAACAGTTACAATCACAGTTATCGTTATCGCAATCGGGCAAGCCCGATggtgacgatgacgatgatgaaattgatcaaatgGAACATGGTGATGATGAACGAGAAGAGGGTGAATTATCGGAAGAACAAATGGCCGAAGAGCAACgaaaatatgaagaagaacagaaagcaattgaaattgaaaaggaaaaattgcgattaaaacaacaacaattacaaaaacaagaaaaagataAAACCAATGAAAACGATCGATGTGGCAAAGAGTATGACGCATCAAAACCACTCGATCCAAATGATAGCAAAGGAAACGATGCACTTTCTGCGATGGAAGCATCATTTAGCTcaccattttcatcgaatatcATTACAAATCATGATGAACCATCATCAATGGACGGACTTAATTCACTAGAAATGCTTCAAAAACGTGCCGAAGAAGTGCTTGACTCCGCATCAAAGGGCATTTTATCAGGTGGACTAACCGATGAAATGGCATTTAAGAACGATGGAAAAGGACGAAACGaaccatttttcaaacatcGTTGCCGATATTGTGGCAAAGTGTTTGGTTCAGATTCAGCACTTCAAATACACATTCGAAGCCACACTGGCGAACGACCGTTCCGATGCAATGTATGTGGTAGCCGATTCACAACAAAAGGCAATTTAAAAGTTCATTTCCAACGGCATACACAAAAATTTCCACACATTCCCATGAATCCAAATCCAATACCAGAACATTTAGATAAATTTTATCCACCATTGTTGCCACCGATTCCACCGGGTCAACAGGCACCGTTATCGCCGCCAGCATCGTCAAACAATACAAACGTTCCGGCATCACCATTAAACTTACCGAATTTACCATTTCCTCCGATACCTGGCTTACCAAACAATTTACAAGGTCTGCAATCATTACAAAGCTTACACAGTTTGCCATTTTTACGGCCACCATTCGATTTACTAAAACAAATGGGCGCTCATCCATTTTTTGGTGCAGTGCGTGATGCTgtgcaacagcaacaacaaaaagagcGTGAACTTGAACAAGACGTACCGGCTGACTTAAGCAAAGCAACCGATTTGTCAAAATCCCAAATCAAAGAGGAGCCCAAAGACGATGAACGTGATGATGGCGAACATTCTCATACTGGTGATGTAATTGAAAAGCCAAAAAGAGGCCGAGATTCAAAATCTCCGGTCgaccgaaaacaaaatgaatcgattgaaaagCGTCGCAGCTTATCACCGCTACCACATCGTCGATCATCATGGAAAGATGACAATAAAAGCGACGGAATGTCACCAACACCGAGCATGGAAAACTATTCACCCAAAGCTGATCAACCGGAAAATCTATCGTCTCGCATCTCATCAAAACATCATTCACCAAGCAGCGTCGGTTCGGCCGCTCGTGATAATCACTTCCATGAGagtcaaaatgatttgaaaatgtttccaaCACTTTTGCCACGACCTGGCAGCAATGACAATTCATGGGAGAGTTTCATCGAAGTGGATCGATCGTCGGAAACATCAAAATTGCAACAATTCGTTGATAATATTGAAAGTAAAATAACCGAACCAAATGAATGTGGTGTGTGTCATAAGGTGTTGTCGTGTCACAGTGCGCTCATCATGCATTATCGCACACATACGGGCATAAGACCgtttaaatgtttgatttgtgGCCGCAAATTTACGACAAAAGGCAATTTAAAAACACACATGAGTGTGCATCGCATGAAACCACCAACACGAACCGTTCATCAATGTCCTGTTTGTCATAAAAAATACTCAAACTCATTGGTACTACAACAGCATATCCGTTTGCATACCGGTGAACCAACCGATCTGACGCTTGAACAAATCAGTGCGGCTGAAATCACACAAATTTCACCATCATCCGGTGCTGCCGCTTTTCCAATGGGTTTGAATCCGTTTGCATTCCCAATACCTGGTTTACATCCAGGCATGAGCGCCGAATCATCAAATGGTGACAATGATGAAATGATGATGGACGAAGATTTTGATGAAGAAAGTAACTATGAAGAAGTATCAAATACCGGTTCGATTTCAGgcgattcaaatcaaaacatatCATCGCGTTTGAATAGCAGCGAAGAATTACGCGAATTGCGCGAATTACGCGAATCACGTACATTGCGGTCCGATCACAACAAATCGATTGAGAATCTATCGCGTGCACCATCGGCCACCAGCCATGCCGATAGTGTCGATGAGAAACGTAGCTCAAGTCCACGTACACCACAACCTCTATCGCCAGCACCATCCGATATGTCACAATGTGCACTCGATTTAACACCACGCTCCGAaccaaaatcacaaaatggCCAAAATCCATTGCCAACATCGGCTGCTGCTGCCGCCGCTGCAGCCGTGGCCGGCTTAAATGCGTTTCCAAATTTCCCATTTATGCATCACAATCACATCAATACAACGACATCGATGATGAGCGGTGCACTTAATTCGCTCGCACAATCCGTTGCACCAATTGGACCATTCAATCCAATGGCTTTGTCAGGTGTTCGCGGTAATACAACATGCAAAATTTGCTTCAAAACATTCGCCTGTCAATCAGCGCTCGAAATCCATTATCGCAGCCACACCAAGGAACGTCCATTTAAATGCTCCATTTGTGATAAAGCATTCACAACAAAGAATGAAGAGCTCATCCATACATCCCTCCATTTCCAAATATATGGTAACATGAAGCAGCATATGATGACGCACAAATTGCGAGATGTGCCACAGCACATGTTTTCAAATAGTAAATTGGAACAATCACGAAATAATATTTCGCCGGACAGTGTAAAAAATACACCATCGTTGCGTGTCCGTTCGGAATCTGAGCTAAATCCACGTGCATCGGCTGCTGCTGCCGATCAACGTGAACGTTCGTTTCAATCACAAGTGGATAGCAACTATCAATTGATGCTTGAACGACAACATCATTTGGAACAAATACAAAGACAGCATCAATTGCAATCACGTCACAGCCCTTTACATCTACAGCGGCAATCATTGAGCGCCATGTCTCCACCACAACATATCAAAAATGAACTCACCTCACGACAAAAATCAACCGCTGATGATGCCGATCAACCCGCAGCTAAACGACAATTGCTATCCGATTCACAAGATATTCCAACCAGCTTAAAAGAAGCCTATCAAATGCCACCAATGCATGAATCAGAGAAAACGGCAGCATCGCATTTGGAACGCTTGCAACAATTTCACACCTCATCACTACTCAATCAACCGATTAAATTGGATCCATCATCACACATGAAATCGTCAGCCACCTCACCCAGTTCAAATGACGCTGATCAAAAGCACTTTTGTCATTTGTGCCAGAAGAACTTCAGCTCAACGTCTTCGCTACAAATTCATATGCGCACTCACACCGGCGAAAGACCCTTTGTTTGTTCCGTATGCCAAAAAGCATTCACCACTAAGGGAAATTTAAAGGTTCACATGGGCATTCATACATGGAGTGGTGCATCACGACGAGGTCGTCGAATGTCATTGGAATTGCCATTCAACGGAACGATGCCGCTGATGTTGCAAAATCCAGAATTTTTACAACGACATTCAGACTTTTTCCATCCATATCCGCCGCATTTGATAAGCCGTATGACACTGGAACATCAAAAACTCGATCGTGAAGCAATGAATCTAGCTAGCAAATATATGAATGCGAATGGATTGTCACGTGGTCATCGTGATGAACGTCAATATTCAAATCCACCATCGCCAGCTGATAGtgataaacaacaaatttccCCGAATAGTTTGCGCGATGAACGCTATACCGATTCACCAAAGCGTAACGGTGACCGCGATCATTCACCATCGCCACGCATGTGGAAATTGCACTACGAAAGCAAAGCAGTTAATCgtgattcaaaatcaaaaggTGACGATCAAAATAAACCTGTCGAAGAACTGACcgcataa
Protein Sequence: MIQFETVKYGILKKTKDNQKMSKGDSTSSCSEEDVLLPETNTLTDESCANMSSTELIESETTCTATAAIDERKQLDKDSASDGEMDTETHHSSDENLENNTTNGLASSNDDDDVTKMSKHNEDAANNNSNEQDADDDDGTEKSDTKNEQSLDNGFGAAAGGGYFSMEAIQKMAQLVSAAMTNNSDNEDAQKQLTLLQSTLFTLQHQQLFQMQLIQQLQSQLSLSQSGKPDGDDDDDEIDQMEHGDDEREEGELSEEQMAEEQRKYEEEQKAIEIEKEKLRLKQQQLQKQEKDKTNENDRCGKEYDASKPLDPNDSKGNDALSAMEASFSSPFSSNIITNHDEPSSMDGLNSLEMLQKRAEEVLDSASKGILSGGLTDEMAFKNDGKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFRCNVCGSRFTTKGNLKVHFQRHTQKFPHIPMNPNPIPEHLDKFYPPLLPPIPPGQQAPLSPPASSNNTNVPASPLNLPNLPFPPIPGLPNNLQGLQSLQSLHSLPFLRPPFDLLKQMGAHPFFGAVRDAVQQQQQKERELEQDVPADLSKATDLSKSQIKEEPKDDERDDGEHSHTGDVIEKPKRGRDSKSPVDRKQNESIEKRRSLSPLPHRRSSWKDDNKSDGMSPTPSMENYSPKADQPENLSSRISSKHHSPSSVGSAARDNHFHESQNDLKMFPTLLPRPGSNDNSWESFIEVDRSSETSKLQQFVDNIESKITEPNECGVCHKVLSCHSALIMHYRTHTGIRPFKCLICGRKFTTKGNLKTHMSVHRMKPPTRTVHQCPVCHKKYSNSLVLQQHIRLHTGEPTDLTLEQISAAEITQISPSSGAAAFPMGLNPFAFPIPGLHPGMSAESSNGDNDEMMMDEDFDEESNYEEVSNTGSISGDSNQNISSRLNSSEELRELRELRESRTLRSDHNKSIENLSRAPSATSHADSVDEKRSSSPRTPQPLSPAPSDMSQCALDLTPRSEPKSQNGQNPLPTSAAAAAAAAVAGLNAFPNFPFMHHNHINTTTSMMSGALNSLAQSVAPIGPFNPMALSGVRGNTTCKICFKTFACQSALEIHYRSHTKERPFKCSICDKAFTTKNEELIHTSLHFQIYGNMKQHMMTHKLRDVPQHMFSNSKLEQSRNNISPDSVKNTPSLRVRSESELNPRASAAAADQRERSFQSQVDSNYQLMLERQHHLEQIQRQHQLQSRHSPLHLQRQSLSAMSPPQHIKNELTSRQKSTADDADQPAAKRQLLSDSQDIPTSLKEAYQMPPMHESEKTAASHLERLQQFHTSSLLNQPIKLDPSSHMKSSATSPSSNDADQKHFCHLCQKNFSSTSSLQIHMRTHTGERPFVCSVCQKAFTTKGNLKVHMGIHTWSGASRRGRRMSLELPFNGTMPLMLQNPEFLQRHSDFFHPYPPHLISRMTLEHQKLDREAMNLASKYMNANGLSRGHRDERQYSNPPSPADSDKQQISPNSLRDERYTDSPKRNGDRDHSPSPRMWKLHYESKAVNRDSKSKGDDQNKPVEELTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01288433;
90% Identity: iTF_01288433;
80% Identity: -