Cnas004169.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- znf711
- Assembly
- GCA_009176525.2
- Location
- NW:1248955-1252291[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.15 5.6 7.3 0.1 2 21 225 244 224 248 0.90 2 13 0.7 26 5.2 2.0 1 20 254 273 254 275 0.86 3 13 4.4e-06 0.00016 21.6 0.3 1 23 296 319 296 319 0.98 4 13 5.8e-05 0.0022 18.0 1.0 1 23 340 363 340 363 0.98 5 13 0.042 1.6 9.0 1.5 1 23 371 393 371 393 0.98 6 13 0.71 26 5.2 0.1 1 11 452 462 452 466 0.90 7 13 0.00011 0.0042 17.1 5.5 1 23 481 503 481 503 0.98 8 13 2.7e-05 0.001 19.1 0.1 3 23 511 532 510 532 0.97 9 13 0.00016 0.0061 16.6 0.9 1 23 540 562 540 562 0.95 10 13 0.0003 0.011 15.8 2.9 1 23 567 590 567 590 0.98 11 13 0.00047 0.017 15.2 1.6 1 23 599 621 599 621 0.98 12 13 0.017 0.63 10.3 2.1 1 23 627 650 627 650 0.98 13 13 0.00018 0.0068 16.5 0.8 1 23 656 678 656 678 0.97
Sequence Information
- Coding Sequence
- atgtgtgcaaaacaaataaagcGATATTGTCGCATTCCATCATGTGAAAACAATCGCGGTAGTACACGAGAAGACCTTCGACTGTTTaaAATTCCTTTTGACCCCGAGACCCGTGTGAAATGGGAAGAAGCGTGTCAGAAACTGTTTGGTATGGATTTTAGGTCATCAACACCATATATTTGTAGTGATCACTTTCACCCCGATGAtctttgcaagaaaaaaaatggaataacaTATAAGACTGGACGGGTTCCAACAATTGGTACCCGAGCAACTATCAAACAGGAACCCAACAATGATGTTGTTAATATGATCAATTTCGTTGACATTGatgcaattaaaaatgaaccCGGAACTGTTAACAGTACCAGCATACACTCGCCGAAACAATCGACACAACAAGAGCGGCAATATGAAATTTACGTTGAGGTAGAACCAAACGACTGTCCGATGTGTGTTGAGTATAAGGCAAAGAACGAAACACTCAATCGAAAATGCGATGACTTGATGGAAGAAAATAAGATACTAAAAGcgaaattgaaagattttttggaaaaaagtgaaaaaccaCCAACGATAACGAAGATACGAATGCAAAAATGTCAAGTCTGTCTAATTTCATTAACACTAGGTGAATTGGAACAGCATTTATGTATGAGTCAAACGGAAATTGAATGTCAATATTGTTTAGCTACATTCAAATCGACTATTGCATTGGGAAGACACTTACAGGAAGCGAAACATGAAGACATGACCATGTATCGTTGCAACAAATGTAATTTGGTCTTTTTGACAGCATATCTGCTTAAGTGCCATCAAGAGTTTGAGAAAAAACTGCCTCGAGATGATATCACAGATATTGATGTACCGCTCACTAATAAAATTTACAAGTGTGGTGTCTGCGGTTTATCGTTTGAACAATCGTATGATTTGGGCAAACATTGGAGAACAAACCACAAGGggaagaaaacacaaaatatttacgtAGATATTGATGTGCCGCTCATTAATAAATTTTTCAAGTGTGCTTTTTGTGATTTATCGTTTGAACAATCGGATGGTTTGagcaaacatttgaaaaaaaatcataatgaaaagAAACCCCATTTATACGAATGTTACCTGTGTAAAATCCGGCTAAATTCATACATGAAGTTGAAGCAACATATTAAGTTACATCGTCGAGATAAAAAATGCGGAGTTTGTGAAGAAGATCTCACGTTGCATGAACTCAATAAGCATGCATGTTGTGAGGAAGGAAAAATCGCGTGCGAATATTGTAATAGTTTGTTCGATACAACAGTTAAGATCGTTGAGCATTTAGAGAGCACGCACACTGAGAACCGGACGATTTATCAGTGCCACTTGTGTCCACGATATTTTGCAATGTTACGCCTTAGAGAATTTCACGAAACACACCACAAAGATACGATAAAACCATTTATATGTGAATTATGCTCAAAAGCGTTTACCAAATCCCATCACctgaaattacatttgaaaagaCATAACACTAAAATTACATCTCTCTGTAGTGAATGTGGCAAAGGGTTCGCCACAGCAAAAGATCTGAACGtaCATATTTCTGTTACACATGAGAAGGAGTCTTGTAAAACTTACACCTGCAAAGACTGCGGAAAAGTGTTTATCAATTACCAACTATACAGTGATCACAAGGAgcttcatttaaatttgacatACAAATGCAATCAATGTACTTCGACCTTCTTTTCCAAACGTAATTTAGTGAGCCATATAAaaCGATTACACTCTGGCTTCATTCCGAAAAAacgttttgtttgttcatattgccaaatgaaatttgaaaaagccaACCGTTTAACTATACACCTTAGAAAACACACAGGAGAAAAACcatATGTATGCGAACATTGTCCGAACAAGAAATATGCATATAAACAAGACTTTGTTAAACACGTAAATACCCATcttaaaaatggattttataaGTGTGAAGAGTGTGACCAGGGATTTCAGCGTCTCATTGAATTACGGCGACATTCATACACTCATTATAAGGAAAAAATGGCTGACACCGGTGAAAGTTCATCGACGAATATCAATTAA
- Protein Sequence
- MCAKQIKRYCRIPSCENNRGSTREDLRLFKIPFDPETRVKWEEACQKLFGMDFRSSTPYICSDHFHPDDLCKKKNGITYKTGRVPTIGTRATIKQEPNNDVVNMINFVDIDAIKNEPGTVNSTSIHSPKQSTQQERQYEIYVEVEPNDCPMCVEYKAKNETLNRKCDDLMEENKILKAKLKDFLEKSEKPPTITKIRMQKCQVCLISLTLGELEQHLCMSQTEIECQYCLATFKSTIALGRHLQEAKHEDMTMYRCNKCNLVFLTAYLLKCHQEFEKKLPRDDITDIDVPLTNKIYKCGVCGLSFEQSYDLGKHWRTNHKGKKTQNIYVDIDVPLINKFFKCAFCDLSFEQSDGLSKHLKKNHNEKKPHLYECYLCKIRLNSYMKLKQHIKLHRRDKKCGVCEEDLTLHELNKHACCEEGKIACEYCNSLFDTTVKIVEHLESTHTENRTIYQCHLCPRYFAMLRLREFHETHHKDTIKPFICELCSKAFTKSHHLKLHLKRHNTKITSLCSECGKGFATAKDLNVHISVTHEKESCKTYTCKDCGKVFINYQLYSDHKELHLNLTYKCNQCTSTFFSKRNLVSHIKRLHSGFIPKKRFVCSYCQMKFEKANRLTIHLRKHTGEKPYVCEHCPNKKYAYKQDFVKHVNTHLKNGFYKCEECDQGFQRLIELRRHSYTHYKEKMADTGESSSTNIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00367267;
- 90% Identity
- iTF_00367267;
- 80% Identity
- iTF_00367267;