Basic Information

Insect: Contarinia nasturtii
Gene Symbol: Bcl11a
Assembly: GCA_009176525.2
Location: NW:112910-116475[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.016 0.58 10.4 0.2 3 23 485 505 483 505 0.96

2 11 1.3e-07 5e-06 26.3 0.4 1 23 511 534 511 534 0.97

3 11 1.3e-06 4.7e-05 23.3 2.3 1 23 540 562 540 562 0.99

4 11 0.43 16 5.8 0.7 1 20 568 587 568 589 0.87

5 11 0.19 6.9 7.0 4.8 1 23 595 617 595 617 0.98

6 11 4.1e-06 0.00015 21.6 2.4 1 22 623 644 623 644 0.96

7 11 0.001 0.037 14.1 0.1 2 23 687 708 686 708 0.97

8 11 8.5e-07 3.1e-05 23.8 1.9 1 23 714 736 714 736 0.99

9 11 0.65 24 5.3 0.7 1 20 742 761 742 763 0.89

10 11 0.0018 0.066 13.4 1.3 1 23 769 791 769 791 0.98

11 11 0.00088 0.033 14.3 2.1 1 22 795 816 795 816 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.016	0.58	10.4	0.2	3	23	485	505	483	505	0.96
2	11	1.3e-07	5e-06	26.3	0.4	1	23	511	534	511	534	0.97
3	11	1.3e-06	4.7e-05	23.3	2.3	1	23	540	562	540	562	0.99
4	11	0.43	16	5.8	0.7	1	20	568	587	568	589	0.87
5	11	0.19	6.9	7.0	4.8	1	23	595	617	595	617	0.98
6	11	4.1e-06	0.00015	21.6	2.4	1	22	623	644	623	644	0.96
7	11	0.001	0.037	14.1	0.1	2	23	687	708	686	708	0.97
8	11	8.5e-07	3.1e-05	23.8	1.9	1	23	714	736	714	736	0.99
9	11	0.65	24	5.3	0.7	1	20	742	761	742	763	0.89
10	11	0.0018	0.066	13.4	1.3	1	23	769	791	769	791	0.98
11	11	0.00088	0.033	14.3	2.1	1	22	795	816	795	816	0.95

Sequence Information

Coding Sequence: ATGGGTGAACATTGGGAAAAGGTACTAGACAACTATTGGTTTAACATCTTATGTACAACGCAGACATCGCTAGGATTGGTGGAGAAAGCATTTCAATGCAgcgcaatttcatttgatgagaATTTCAAGGAAATCTTTTTGCGAGCAACGAATGACTGGGTCACTAAAGCGTACGAACTATATCTCACTAAAACAAAGTTGAAGGAGCAACTCATTGGAGTTCGTGGCGGAAATGCTCCGTCAAATCATAATTTGGACAAAGATAAGACGACCACCGATACAAGCGGTGAGATTGTGATCAACGGATCGTGTAGCTGTCATCGGCCGGAGCTTGGCACTGCTCAATCTACATACAAAATAACACATGGCAATGGACGAGGAGATGGAAGCGCTATTTGTGTGACAATCATCATATCGAATCAGCCAGCGGACGATCCAAAGACAAGCCAAGAGGTCAATGTACTCGTCAATCGCACAGAATCGGATGGGGCCATGGATGATACAGAATCAATGCCAACCACAACGAACGGAATTGACGTGAGTGAAGACAACACTGGAAATGACGCATCGAACAAAGGAACAACGAGCGATTCAATGACGACAGACGAGACTAGTCCAGTCATCGGTGAATTAACCGAAGTCAACACAGTTGATGTTCAAGAAGACGAACCGATTCACTTCGATCTGCCGAATGGTATGACCATTGACGAACGCATCGATTTGATTTCTGAAAATACCGTGGAACCATCAGAAAACATCGACAGTGAAATGGATGGAAACGAAGCCCAGGAAGTGACAACGAATGAACCAGCGACTGAGCCTATTACAGCAGTGGTACGTGAAGAGATAAATGAAGTCACCGATCATCAATATGAGAACAATGCCATGGATGAGCCACAGTTATTGCCAAGTGATACGACAGAAAGTGACCagaacgaagaaaatattgGAAATGGCAAAATCAGCGATGGaacaacgaatgaaatgaTCGGAACAAATGAAGCAGGTCGAGATATAAGTGAATTAGATCAAGTCAACGAAATTGATGCTCTAGAAGCCGAAGCCATTCACATTGATATAGAGAACGGTACTATTGTTGACGATTTGACTCATGAAACTGCCGCAGCATCTCTGGAAAACATTGGCAATCAAATCAACCAAAATACCgcacaaaaaaagacaacgaATCAAcgtcgaaagagaaaaattgcaGACGCATCGACATCGAATGGCAATTCAAAGAAGAAACGGAAGATTGCAACACGTTCGACACTGAAAACCATTCGAGAATCGATTTCAGAATCGCCATTGATTGATCTGACATTTGATGATGCAGAGAGGTTGCAGCAGTCAAACAACGTGGATATTCAATCGGGTGAACGGAGTGAAAGCAATTCAAATGGTGCTGAACAACAGAATGGATCGGCATCAAATGGGAAATCCAAAACAAATTGTGAGTTTTGTAATTATGTAGCTCCGAGTGCATCAAAGCTGATAAGACATAGAAGCATCCACACTAGCGAGaaaccatttgaatgcaaCATTTGTGCGAAAGGATTTACTCGAAAAGACAATCTGAAAGCGCACATGATGCGCATTCATACCGGTGAATTGCCTTTTAAATGCAACATTTGTGCGAAGAGATTTGCTGAAAAGAATACTCTAAAGAAACACATGAGAACTCACGCAAAACAGTTCCCGTTCCAGTGCTCGATTTGTCGACAAGGATTCACGGCGAAACGGACAAAGGAGACGCACGAGAAAAACTGCAATCCACGTCGATATGAATGTTACTTGTGCAAATATTCTACATTGCACAAATCAAGCTTAGTCAGTCATATGTGCATTCATACCGTAGGCAGACCATTCCGATGTTCTCATTGTTCAAAACGATTCGCCAGAAAATCTGATTTAGAATCGCACCTAAGACGGCTTAATGACAAAGCGAAAGAACAAGTTGAAAAGCTTTTCACTGCCGAAGAACGGCTGGAGAgtgaaaccaattcaaattgcGTTGAACAACCGAAAGAATCGACATCAGGCGTgaaatccaaaacaaaatgtgagtTTTGCAATTATGTGGCCAAATATCCGGCAAATCTGATTGTGCACAGACGCATACACACTGGCGAGaaaccatttgaatgcaaCATTTGTGCGAAAGGATTTATTCAAAAGCAACATCTGGAAAGGCACATGAAAACTCACGGGAATCAATTCCCATTCCATTGCTCGATTTGTCGACAAGGATTCACGGTGCAACGGACAAAGATTGCGCACGAGAAAAACTGCAGTCGACAACTATTTGAATGTTACTTGTGCAAATATGACACCGTACGTAAAGGGAGTTTAGTCTATCATATGCGTAAGCATACCGTATCATTCCGATGCTCTCATTGTGCCAGACTATTCAGCACAAAAGCTTCTTTAAAATCGCACTTAAAACGACTTAATGAATATTGTATAAATGAAGTCACAGAATAA
Protein Sequence: MGEHWEKVLDNYWFNILCTTQTSLGLVEKAFQCSAISFDENFKEIFLRATNDWVTKAYELYLTKTKLKEQLIGVRGGNAPSNHNLDKDKTTTDTSGEIVINGSCSCHRPELGTAQSTYKITHGNGRGDGSAICVTIIISNQPADDPKTSQEVNVLVNRTESDGAMDDTESMPTTTNGIDVSEDNTGNDASNKGTTSDSMTTDETSPVIGELTEVNTVDVQEDEPIHFDLPNGMTIDERIDLISENTVEPSENIDSEMDGNEAQEVTTNEPATEPITAVVREEINEVTDHQYENNAMDEPQLLPSDTTESDQNEENIGNGKISDGTTNEMIGTNEAGRDISELDQVNEIDALEAEAIHIDIENGTIVDDLTHETAAASLENIGNQINQNTAQKKTTNQRRKRKIADASTSNGNSKKKRKIATRSTLKTIRESISESPLIDLTFDDAERLQQSNNVDIQSGERSESNSNGAEQQNGSASNGKSKTNCEFCNYVAPSASKLIRHRSIHTSEKPFECNICAKGFTRKDNLKAHMMRIHTGELPFKCNICAKRFAEKNTLKKHMRTHAKQFPFQCSICRQGFTAKRTKETHEKNCNPRRYECYLCKYSTLHKSSLVSHMCIHTVGRPFRCSHCSKRFARKSDLESHLRRLNDKAKEQVEKLFTAEERLESETNSNCVEQPKESTSGVKSKTKCEFCNYVAKYPANLIVHRRIHTGEKPFECNICAKGFIQKQHLERHMKTHGNQFPFHCSICRQGFTVQRTKIAHEKNCSRQLFECYLCKYDTVRKGSLVYHMRKHTVSFRCSHCARLFSTKASLKSHLKRLNEYCINEVTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -