Cnas006177.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:469517-476089[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.7 1e+02 3.3 0.1 2 19 33 50 32 52 0.84 2 16 0.0043 0.16 12.2 1.4 1 23 72 94 72 94 0.95 3 16 0.55 20 5.5 0.2 1 23 100 123 100 123 0.86 4 16 0.0081 0.3 11.3 1.2 1 23 126 149 126 149 0.95 5 16 0.00053 0.02 15.0 0.1 2 21 158 177 157 178 0.93 6 16 0.00013 0.0047 16.9 1.4 1 23 186 208 186 208 0.98 7 16 0.027 1 9.6 2.0 3 23 216 236 214 236 0.95 8 16 0.00013 0.005 16.9 2.1 1 23 242 264 242 264 0.94 9 16 2.1e-05 0.00078 19.4 0.6 1 23 562 585 562 585 0.96 10 16 0.0047 0.18 12.0 0.7 1 20 598 617 598 618 0.96 11 16 0.0053 0.2 11.9 2.0 2 23 656 678 655 678 0.96 12 16 0.00021 0.0079 16.3 0.2 1 20 690 709 690 711 0.93 13 16 0.0013 0.047 13.8 0.6 1 23 719 743 719 743 0.98 14 16 0.00015 0.0055 16.7 2.6 1 23 749 771 749 771 0.98 15 16 0.00064 0.024 14.8 2.5 1 23 777 799 777 799 0.95 16 16 0.0079 0.29 11.3 3.2 3 23 807 827 805 827 0.98
Sequence Information
- Coding Sequence
- atggttcgaaaaaatcaacaacaaaagaacGCTGAACATCAGAACTTATCTAATCGCTCCGATAAATCCGATAATGAAGAAAGCAATGATGAactgaaatgtaaatattgtgATGTGGTTTCGGTCACTGTcgacgaaaaacaacaacatgagGAAGGATGCGAATCAAAGGCCACCGCAAATGTTTTCATCACATCAGATGGAAAACTACGATTTTTGTGTTCGGTGTGCAATCAATTGTTTAAGTATCAAACTGGGCTGAAAAAACATGAACTACGACATAAGCCGCCGGGAGGCTTCAATTGTTCTGAATGTTCCGAACGTTTCATAACCGACGCTGAGCGATCCATACACAAGGAAATCGTTCATAAGaTATTCAAGTGCCTCATTTGCAATGCCAAATGTTCATCGGAAGAAGAATTCTTAAAGCACATCAATGACTTACACGAAGGAAGAGATAGAGAATATGTCACTTGTGGAGATTGTGGCGCTCAATTTCGGCAGAAGAATCAGCTAAGACTACATATTGAGTCAAAATGTGGTACAGTTCGATGTTATACATGCAAGCAATGCAATTCGAAATTTATGACACAAAACACACTAAACGCCCACATGCTCATTCACTTGGGCGACAAGAAGCATCTCTGCAATTTCTGTGGTAATAGTTTCTTGAGCCGAGGTCAACTGAAGATACACGAACGATCACATACGAAAGAGAAGCCATATTCGTGTAAAGTTTGTAATAAGTCCTTTGCACATCGTGAAAGTCTAGTAACTCATTCATCGTTGCACACTGGAATCAAGCctTATCAATGTCAGTGTTGTGGTTCACAGTTCTCATGTATTGGCAATTTGATAAAACATCGTCGAGTTCGTCCTGAAACTTGCGGGCTACCTCAGTACACCAATGTGAAATGTGCCCCTCGTGCATCCACCAAAGTTCCGGGAAGTTTGACCTTGAAAAAAGAGAGTCCAGTAAAACGAGCCTATGCAAAGCGTAAAATTGTAAGCGTGCCTGAATTGTTATCCGTGCGTGCCGAATTAACTAGTCAAACTGTACAACCAAAAGTCGAACCGATCGATGACCAACATGAATTCGATGAGTTTTTAATCTTGAATAAACCCGAATCGAGAGAAATTGACGAAtcgaataattttgtaaaaagcGAAATGAATgagtcaattgaaaatgatccATCGTCTGGATGCATTGAAATAATTGATCAAAGCATACTGAATTCACCGTTGGCCACAGAAAATAGTAGCATATCATATAATATTGCCAAGAGTAGTGTTTTGGTGCTCACGGCTGATGGTAATTATATGATTGCAAATTTGGAAGATGATAAAAAGCCCATCGAATTAAAAGTATCACAACCACCACAAGTCGAACAAGTCTTTATTTTGAATAGCAACGACATACAATTCACCGAAATGGAAGTTGACGTTGACTGCCCAGGCACCGTACCGAGTGTGAATGACAAAAGGAATGTTCATATTCTGCAAAATGCAATATTGAGAAAGAGTCCGATGTCGGCTGCCGATGATAGTCAGAGTGTCGAGATTCTGGGTGAACAACATCTTGAAAGTGATATTCAACATTTGGAAATCGTACCAGCTGACGAATCAATTAATACAACCGACTCGAGCATCAAAATTGGTGATTCACAAGTCATCGAAGTGTTTGTATGTGAAATATGCccaaaacaattcaaacaagaaaaatctCTGCTGAAACATTTGGGTACGAAGCACAACATTGAAGTGTGTGATTATACGAAAAAGGAGTcgttcaaatgcaaatattgtgataaacaatatttaacCGAGAGTCTATTGAATAAACACGTCGTTTGCCATGGTGCAAATGGTGAACTTATCCACAAGTGTTCTTGCTGTACGTCATACTTCGAGACAAAGGAAAAAATGCAAGAGCATGCTCAAAAAGAGCACGAAGACcgtttgaaatgtaattattGCAATAAGATATACAAGGACGTCGATTGCAAAGCAGCACACATACGACGTACGCACACAAAAACTGGTgcaccacaaaaaaaatatacatttgtttgttcaaaatgtggcaagaaatttaattcaaaagttGCTTTATCCGATCATGAACAAGGCGATTGTGGCCAATCACCAATTTATAAATGTGATTATGAAGGGTGTGGAAAGTCTCTGCACAGTATGGgatcattgaaaattcatcagATGATTCATACGGGCGATTTACCgttttcatgcaatttttgtAAGAAACAATTTCGCACTCAGGGCCAAGTCAAAGTCCATGAACGTAGTCATAGCGGTGAAAAGCCATTCAAGTGCAATCAATGTTCGAAAGCATTTGCACATCGTGAAAGTTTACTAACACATTCATCGCTGCATAGCGGCCATAAGCGTTTCGGATGTCATGGATGCGGTGCTCGATTTTCATGCATCACCAATCTTCAAGCGCACCGTCGAACCCACCAAGATACCTGCGGACAATTGCCATTGGATACAAAAGCGCAATACTCTTATATTATAGACAATGGCACTGTCATTGCAGATCCAGAAAAAAACGCCCCATCAAATCCATCTATCTAA
- Protein Sequence
- MVRKNQQQKNAEHQNLSNRSDKSDNEESNDELKCKYCDVVSVTVDEKQQHEEGCESKATANVFITSDGKLRFLCSVCNQLFKYQTGLKKHELRHKPPGGFNCSECSERFITDAERSIHKEIVHKIFKCLICNAKCSSEEEFLKHINDLHEGRDREYVTCGDCGAQFRQKNQLRLHIESKCGTVRCYTCKQCNSKFMTQNTLNAHMLIHLGDKKHLCNFCGNSFLSRGQLKIHERSHTKEKPYSCKVCNKSFAHRESLVTHSSLHTGIKPYQCQCCGSQFSCIGNLIKHRRVRPETCGLPQYTNVKCAPRASTKVPGSLTLKKESPVKRAYAKRKIVSVPELLSVRAELTSQTVQPKVEPIDDQHEFDEFLILNKPESREIDESNNFVKSEMNESIENDPSSGCIEIIDQSILNSPLATENSSISYNIAKSSVLVLTADGNYMIANLEDDKKPIELKVSQPPQVEQVFILNSNDIQFTEMEVDVDCPGTVPSVNDKRNVHILQNAILRKSPMSAADDSQSVEILGEQHLESDIQHLEIVPADESINTTDSSIKIGDSQVIEVFVCEICPKQFKQEKSLLKHLGTKHNIEVCDYTKKESFKCKYCDKQYLTESLLNKHVVCHGANGELIHKCSCCTSYFETKEKMQEHAQKEHEDRLKCNYCNKIYKDVDCKAAHIRRTHTKTGAPQKKYTFVCSKCGKKFNSKVALSDHEQGDCGQSPIYKCDYEGCGKSLHSMGSLKIHQMIHTGDLPFSCNFCKKQFRTQGQVKVHERSHSGEKPFKCNQCSKAFAHRESLLTHSSLHSGHKRFGCHGCGARFSCITNLQAHRRTHQDTCGQLPLDTKAQYSYIIDNGTVIADPEKNAPSNPSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -