Basic Information

Insect: Contarinia nasturtii
Gene Symbol: -
Assembly: GCA_009176525.2
Location: NW:1209462-1212247[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.4e-06 5.1e-05 23.1 4.8 1 23 72 94 72 94 0.98

2 12 0.00019 0.007 16.4 0.2 1 23 100 123 100 123 0.96

3 12 0.0087 0.32 11.2 0.1 3 23 130 150 128 150 0.93

4 12 0.00012 0.0046 17.0 0.3 1 23 156 178 156 178 0.98

5 12 0.00052 0.019 15.0 3.4 1 23 191 213 191 213 0.98

6 12 0.0084 0.31 11.2 2.6 1 22 219 240 219 240 0.95

7 12 3.6e-05 0.0014 18.7 0.9 2 23 363 384 362 384 0.94

8 12 3.1e-05 0.0011 18.9 5.9 1 23 390 412 390 412 0.99

9 12 0.0099 0.37 11.0 1.5 1 23 550 572 550 572 0.91

10 12 0.00023 0.0087 16.1 2.2 1 23 578 600 578 600 0.96

11 12 0.00017 0.0064 16.5 3.4 1 23 606 628 606 629 0.96

12 12 1.5 55 4.2 1.7 1 12 635 647 635 650 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.4e-06	5.1e-05	23.1	4.8	1	23	72	94	72	94	0.98
2	12	0.00019	0.007	16.4	0.2	1	23	100	123	100	123	0.96
3	12	0.0087	0.32	11.2	0.1	3	23	130	150	128	150	0.93
4	12	0.00012	0.0046	17.0	0.3	1	23	156	178	156	178	0.98
5	12	0.00052	0.019	15.0	3.4	1	23	191	213	191	213	0.98
6	12	0.0084	0.31	11.2	2.6	1	22	219	240	219	240	0.95
7	12	3.6e-05	0.0014	18.7	0.9	2	23	363	384	362	384	0.94
8	12	3.1e-05	0.0011	18.9	5.9	1	23	390	412	390	412	0.99
9	12	0.0099	0.37	11.0	1.5	1	23	550	572	550	572	0.91
10	12	0.00023	0.0087	16.1	2.2	1	23	578	600	578	600	0.96
11	12	0.00017	0.0064	16.5	3.4	1	23	606	628	606	629	0.96
12	12	1.5	55	4.2	1.7	1	12	635	647	635	650	0.90

Sequence Information

Coding Sequence: atgggaaGTGAAGTTGAGATAgatgatgttagttttaatgGTGATTGTGGCATTGAttacgatgatgatgatggcatTGGTGGAGAACTCAGTCCAATGAGTTCATTGCTGGTGCCAGAGATAGCTCTTTCCGATGGCAACGATGATTTCGACGAGACAAACGGTGAGAGCAGTTCAAGCCTCTTAATCGAAGTAACAAACGGCATACGGTCATACAAATGTGATGTGTGCGAGAAACAGTTCAAAAGGAAGGCTCATCTAAGAAGGCATTATCGCCTTCACACCGGTGAAAGACCGTATGATTGTCAATGGTGCGGCCAAGCGTTTGCACGTTCCGAACAACGAAATCAGCACATGGCAAAGGAGCACAAACAAGCGCGCATCAATTGTAGCATTTGCGGCAAAGGATATAGTAACGACGAGGAGCGCATCAATCATATGGTGTTACATTTGGAAAATCGTTATTTTCGTTGTACAATTTGCATGAAAGAATTCGATAAGGCTAGTTTATTATCCGCTCATATGCAAATCCATACGAAAAACGAACCGATGGGCGAATCacgaaaaacattcaaatgtacaacaTGCTTGATGGAATTTACGCGATTCGATCATCTCATTCGGCATCAAACAGTGCACTCAGgtgtaaaaatgtttcaatgtaaattttgcatgaaacgCTTCACTCGAGCCGATAATCGaacaaaacacgaaaaaacGTGCCGAATCGGACAtccaaatgaaacaaatgaatcgtttgaaataaaagaagaagttATCATCAAAACCGAACCACAACCACAAACGGACCCATTGGCGATTATCAATGTGGAATCGATTCCAGAAGATTATTTTGAAGACATCGATACCAGCAATAATACGGAtgatttattggaaaatatcgatttatttCAGGACACCACTGAAAATAGTttaattgaagttgaaaacaaaaagccATTGATCAATGCAGTTGAATACGTTCGCATGAAACAAAGTGAAGCGGAcgatgatttgaaaaaaatgggcGGCATTCGGCAAAGAGTCGAGCGACCGAAATTAACGCATGAAGAAATTGCAACGCTTACCTGTAATATTTGTGGTAAAACTCTggcacaaaaatatcatctTGTTCGCCACAAAGTCATACATCTCAACCAAAAGCCATATAAATGCTTAAAGTGTTCCCGGTCATTTGCTAGGCGGGAGCACCTAAGGCACCATTTAATCACGCACAAAAGACAAACGgagagaatgaatgaacttGTTGAACAACACCGGCGAGATATACGCTCAACTCCCGCTCCAGTTcggccaaaaatcaaatccGATCCATGCGTTCCATCAACATCCAAACCGAATCGGTACAGAGATACACTAACGGGCACGTTGAGACAACAGTTACTTCATCgattcaaattatttgcaataaaactGAAGCACGAAAATATGAATCCGGAAAATGGTGATTTTTATGAACAATGCTTCAACTTTATGGGCAATTTGATAATGTCAAATATACAAGGTGTTAACAAAGAAATGTTTTCGGTTGTTTCTACCGTAAATAACCcatcacaaaatgtgaaaacgtCATTAATGCCAACTGTCACAATAAAACAAGAAGATGGAcaattatttgtgaaaaagtACTCGTGCAACCAGTGCGAATCATCTTTTCCAACAATCAGACATCTTGAAAGACACTCAGTTCAACATACCGGCGAAAAGCCACACATATGCGAAGTATGTGGCAATCGTTTTACCCGAGCTGAACATAAGCGGAGACATATGGCCATTCATACAAATTCACAGAATTACGAATGCGAGATATGCCTAAAGAAATTCAGTCGCTCCGATCACATGGTCGCTCATTTTAAGGTGCATCATTCTGGAGTCAAACCatacaaatgtaaatttatgtGCGGCGAACGATTTGATAcgttcaaagaaaaattattccaTTCACGTCATTGCATAAATATACAACCGGCACCAACTTCAAATATTAAAGTCGATGAAATGATGCCATGCAGCAGTGAATCACAAGAAGATATACCAATAGCCGAAGATCCATTTGCCAATGGGCAACtcgaaaacaatgaacaaaccGATGTGCATCAATTTCAGAGCCATTTCATCAAAACGGAAGCGTTGGATTACCCAGATGACGATTACGATCCGGTCTATGGCTATTAG
Protein Sequence: MGSEVEIDDVSFNGDCGIDYDDDDGIGGELSPMSSLLVPEIALSDGNDDFDETNGESSSSLLIEVTNGIRSYKCDVCEKQFKRKAHLRRHYRLHTGERPYDCQWCGQAFARSEQRNQHMAKEHKQARINCSICGKGYSNDEERINHMVLHLENRYFRCTICMKEFDKASLLSAHMQIHTKNEPMGESRKTFKCTTCLMEFTRFDHLIRHQTVHSGVKMFQCKFCMKRFTRADNRTKHEKTCRIGHPNETNESFEIKEEVIIKTEPQPQTDPLAIINVESIPEDYFEDIDTSNNTDDLLENIDLFQDTTENSLIEVENKKPLINAVEYVRMKQSEADDDLKKMGGIRQRVERPKLTHEEIATLTCNICGKTLAQKYHLVRHKVIHLNQKPYKCLKCSRSFARREHLRHHLITHKRQTERMNELVEQHRRDIRSTPAPVRPKIKSDPCVPSTSKPNRYRDTLTGTLRQQLLHRFKLFAIKLKHENMNPENGDFYEQCFNFMGNLIMSNIQGVNKEMFSVVSTVNNPSQNVKTSLMPTVTIKQEDGQLFVKKYSCNQCESSFPTIRHLERHSVQHTGEKPHICEVCGNRFTRAEHKRRHMAIHTNSQNYECEICLKKFSRSDHMVAHFKVHHSGVKPYKCKFMCGERFDTFKEKLFHSRHCINIQPAPTSNIKVDEMMPCSSESQEDIPIAEDPFANGQLENNEQTDVHQFQSHFIKTEALDYPDDDYDPVYGY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -