Basic Information

Insect: Contarinia nasturtii
Gene Symbol: -
Assembly: GCA_009176525.2
Location: NW:1667216-1671819[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.085 3.2 8.1 0.6 1 23 5 27 5 27 0.95

2 15 3.9e-05 0.0014 18.6 0.2 2 23 144 166 144 166 0.95

3 15 0.00099 0.037 14.2 0.5 1 23 172 196 172 196 0.96

4 15 0.21 7.8 6.8 0.1 1 21 203 223 203 224 0.90

5 15 0.0031 0.12 12.6 3.1 2 22 309 329 308 331 0.89

6 15 0.018 0.65 10.2 0.8 1 20 338 357 338 359 0.93

7 15 2.5e-05 0.00093 19.2 1.4 2 23 369 391 368 391 0.93

8 15 0.33 12 6.2 3.9 1 20 397 416 397 418 0.94

9 15 0.0011 0.04 14.0 0.4 1 23 438 461 438 461 0.96

10 15 4.5 1.7e+02 2.6 0.0 6 20 471 485 470 487 0.93

11 15 0.00013 0.0049 16.9 2.8 1 23 505 528 505 528 0.98

12 15 1.1e-05 0.00041 20.3 1.4 1 23 535 558 535 558 0.93

13 15 0.83 31 5.0 3.7 3 23 566 586 565 586 0.90

14 15 0.00065 0.024 14.7 0.5 1 23 592 614 592 614 0.98

15 15 0.00018 0.0065 16.5 2.8 1 23 620 645 620 645 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.085	3.2	8.1	0.6	1	23	5	27	5	27	0.95
2	15	3.9e-05	0.0014	18.6	0.2	2	23	144	166	144	166	0.95
3	15	0.00099	0.037	14.2	0.5	1	23	172	196	172	196	0.96
4	15	0.21	7.8	6.8	0.1	1	21	203	223	203	224	0.90
5	15	0.0031	0.12	12.6	3.1	2	22	309	329	308	331	0.89
6	15	0.018	0.65	10.2	0.8	1	20	338	357	338	359	0.93
7	15	2.5e-05	0.00093	19.2	1.4	2	23	369	391	368	391	0.93
8	15	0.33	12	6.2	3.9	1	20	397	416	397	418	0.94
9	15	0.0011	0.04	14.0	0.4	1	23	438	461	438	461	0.96
10	15	4.5	1.7e+02	2.6	0.0	6	20	471	485	470	487	0.93
11	15	0.00013	0.0049	16.9	2.8	1	23	505	528	505	528	0.98
12	15	1.1e-05	0.00041	20.3	1.4	1	23	535	558	535	558	0.93
13	15	0.83	31	5.0	3.7	3	23	566	586	565	586	0.90
14	15	0.00065	0.024	14.7	0.5	1	23	592	614	592	614	0.98
15	15	0.00018	0.0065	16.5	2.8	1	23	620	645	620	645	0.97

Sequence Information

Coding Sequence: ATGAGAACAGtgcatcaatgtttgttttgtccGCAAACATTTGGCAGTGCCAGCGAAAAAGATGATCacattttacaacattttgcCCAAGAAACATGCATCGAATGCGACCAACATTTAATTCGTATCGGTAGTAATTTGTACACTAAGCACAATGCCGTAACATGTATTAAAGTGAACATCAAAACAGAAGAGCCAATTTGCCAAGAGGATCAACACGAAACCATCGacgaaaaaagagatgaaaatggttttacaGCGGTCAAATCATTGaccattgaaacaaaaccCGATTTAATTGCTTTGAATGAACAACTTATGCTTGCCGATGAGAATAATTTGGTAGAGAATTGCGAATACGAACTCGACTCAATTGATACATCGGGAGCCGTATCTGAATCgacaacaaacaatgaaaacgaatcCAATGAATGCAATATGTGCGGCAAAGTGCTTTCATCCAAAGACGGCTTGAAAAAACACGTATTAATCACACACAGCGCCCCTGGTCATTTTCCGTGTGAAATATGTCCAAATGTGACTTTAACGCGAAAGGATTCATTGAGAAAgcatatgaaaatgaaacatgatCCGAATCGGGTAAAATTCAAGTGTAATTATTGCCCATCGGTGTTTTTGAAAGAAATCTCTCTGGAAGCGCATCTTTCTAAATGTAAAAGACGAACTGAGATATTAGAAAGTGGAGACAGTGGCACCACCATTGAAACTGTGAACACTTTTCAAATTAAGGAGGAACAAATTGATGATGAACACGAAAATTCAGAGAATACAGTTTGCATGGAAACGGTAGAAATGGAACCAGgacaacaaaatgaacattcacccgtcaaaattataaatgaattcaattcgaatgaaaataatgatcgAGAAAAGGGGAGGCAACCAAATGGCGACGACAAGAAATGTGACATATgccataaaacattttttgataaaaatacagTTCGAAGACACAAAGTGCTCGTGCATGGTGAAACATCCGGGACGCATGAGTGTTCGaagtgcaaaataaaattcttcaGCGCAAAAGGTTTAGCCAGACATGAGCTAAAGTGTACAAAAGATGTTGCCGAAAGTCTCGAATGTAAAGTCTGCAAAATGGTATTCGAAACAAAGTCAAGTCTCACAAGACATATAACCCATGCACATTCAGAGGTCAAAAAATTTCGTTGTACAACCTGTGGATGCATTTCTACTAACAAAgtaacatttgaaaatcataaatgtgGAAGAAATATAACAAATCCTACCGCGAGTGCGATGAATCGACAAAACACCATCGGTAAATTTGTGTGTGATAACTGTGGAAAAACAATAGGATCAAAAATAGCGTTgcgaaaacataaaattcgCTTTCACAGTGCCGAAGGTACACATGTTTGTGCTTGTACCAAAATGTTTGGTACAGCTGAAGCACTTGCCGAACATAAGGCCATATGtgaattcagaaaaaaatccagatttCCATTGATACATAGGGGAAAGACTTTCGAATGTCATTTGTGTCATAGAGTTATTAAAGACATAGTCTCCCTTCGCAGGCACATGCGGCGgatacattttccatttgaaaagaGATACAACTGCGAAAAGTGTGGAAAACGTTTCGTACATCCATATGAACTTCGCAATCACAATGAGTCGGTTCACTTAAAAATTCGCAAATCCTTGTGCACAATATGTGGAAAATCCTTTTTGTGCGACCAGGCATTACGGATACATATGAATAAACATACAGGTGAAACTCCGTATAAATGCCAACTCTGTGAGAAAGCATTTTCTAATCCAACAGTACGAGATATGCATATACGGACTCATACGgaagaaagaaattttaaatgcCCATATGAAGGATGCGACAAACGATTTAAGACTCCAGCTAATGCTCATAAGCATAAGAAGAAAACACATGGATACTTAAAAGAGGAACAATCTAAAGACACATGA
Protein Sequence: MRTVHQCLFCPQTFGSASEKDDHILQHFAQETCIECDQHLIRIGSNLYTKHNAVTCIKVNIKTEEPICQEDQHETIDEKRDENGFTAVKSLTIETKPDLIALNEQLMLADENNLVENCEYELDSIDTSGAVSESTTNNENESNECNMCGKVLSSKDGLKKHVLITHSAPGHFPCEICPNVTLTRKDSLRKHMKMKHDPNRVKFKCNYCPSVFLKEISLEAHLSKCKRRTEILESGDSGTTIETVNTFQIKEEQIDDEHENSENTVCMETVEMEPGQQNEHSPVKIINEFNSNENNDREKGRQPNGDDKKCDICHKTFFDKNTVRRHKVLVHGETSGTHECSKCKIKFFSAKGLARHELKCTKDVAESLECKVCKMVFETKSSLTRHITHAHSEVKKFRCTTCGCISTNKVTFENHKCGRNITNPTASAMNRQNTIGKFVCDNCGKTIGSKIALRKHKIRFHSAEGTHVCACTKMFGTAEALAEHKAICEFRKKSRFPLIHRGKTFECHLCHRVIKDIVSLRRHMRRIHFPFEKRYNCEKCGKRFVHPYELRNHNESVHLKIRKSLCTICGKSFLCDQALRIHMNKHTGETPYKCQLCEKAFSNPTVRDMHIRTHTEERNFKCPYEGCDKRFKTPANAHKHKKKTHGYLKEEQSKDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -