Basic Information

Insect: Contarinia nasturtii
Gene Symbol: -
Assembly: GCA_009176525.2
Location: NW:4235346-4238036[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0054 0.2 11.8 0.9 2 23 236 258 235 258 0.95

2 10 9.6e-05 0.0036 17.3 0.3 1 23 264 286 264 286 0.98

3 10 0.00025 0.0094 16.0 2.3 1 23 292 317 292 317 0.98

4 10 0.34 13 6.2 1.2 1 23 323 352 323 352 0.88

5 10 3.5e-05 0.0013 18.7 2.2 1 23 358 380 358 380 0.98

6 10 1.1e-05 0.00039 20.4 1.3 1 23 386 408 386 408 0.99

7 10 3.4e-07 1.3e-05 25.1 0.3 1 23 414 438 414 438 0.96

8 10 3.5e-06 0.00013 21.9 0.5 1 23 444 466 444 466 0.99

9 10 4.1e-05 0.0015 18.5 7.1 1 23 472 496 472 496 0.97

10 10 0.00026 0.0095 16.0 2.2 1 23 502 524 502 524 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0054	0.2	11.8	0.9	2	23	236	258	235	258	0.95
2	10	9.6e-05	0.0036	17.3	0.3	1	23	264	286	264	286	0.98
3	10	0.00025	0.0094	16.0	2.3	1	23	292	317	292	317	0.98
4	10	0.34	13	6.2	1.2	1	23	323	352	323	352	0.88
5	10	3.5e-05	0.0013	18.7	2.2	1	23	358	380	358	380	0.98
6	10	1.1e-05	0.00039	20.4	1.3	1	23	386	408	386	408	0.99
7	10	3.4e-07	1.3e-05	25.1	0.3	1	23	414	438	414	438	0.96
8	10	3.5e-06	0.00013	21.9	0.5	1	23	444	466	444	466	0.99
9	10	4.1e-05	0.0015	18.5	7.1	1	23	472	496	472	496	0.97
10	10	0.00026	0.0095	16.0	2.2	1	23	502	524	502	524	0.98

Sequence Information

Coding Sequence: atggatacATTTTATCCGAAATTTGGTGAAGTGGAATTGGTTTTAGTCGATGATGacaatgatttttatgatCCATTAGAATCAAATTTCGAAATTGAAGacaaagaagaaacaaaacttCAATTGGATGATACGGTATACGACGAAAGTCAGTTCCATTTGGTTTCGGATGAATCATCAAATAGCATAGCCGATGCAGTTGGTGCTGAATCAATAAAACAGGAAGTTTCCCATGAAAATAGTGACAAAATACCCAATATTTcggtaaaaattgaaaaaaattgcgaaagtAGCAATGATTCGTTCGATATAGAGGATAATGTGCAATGCTATGATTCCGATAGTTTATCAGATGAATATGAAACCAAGCCAAATTTAGAAGAAATTTTGCCAATTGACGACAACATCACAAATCCAAGTGCAAATAAATCGGAACAAATTGATAAGACTGAGAGTAAGCCACCTATATGCGAGacaaaatcaaagcaaaaagGCAGTAAGGTCAAGactaaaatagaaaatgtggCTGCAGAAGCCAGCACGAGTAAAACGAAAGTTAAAAAAGAGCCCAATGTGACAAAAAAGCGATTAAAAGATATTAAGAAGGTAGAAATTTCaacagaaaaatcaacaagGCAATATAGCAGacgaaatgaaattccaaaagaaGCGGTACATAATGAAGcatatgataaaaaattgcTCAACTGTAAGATTTGCAATATCCAATTTGATAAATCGCCCTTTTTTACGGAACACATGCgagaaaaacattcaattgataaaCCGTTCGAGTGTTTTATCTGCCAAAAAGCGTATCGCATTAGCAGCTTATTGGCTGAGCACATAAgATATCATTTTGGAGAGAAGCCCTACAAAtgcaaatatgaattttgtgaTCGGAGCTTTAGTCAATTACAACCATACAAAGCGCACATTCGGAAATTTCATACTCTTGAACGACCttataaatgtgattttgttgatcaaaataatgtaaaatgtgaTGAGTCATTTTTTGATACAAAAACGTACAAGTTTCATATGAGAGAACACACTGGATCGCATCCATTCACCTgcgaattttgtgaaaaaaaatttgatcatTCTGGACAATATCAAGCACACGTGAGAATCCATACTAATGAGAAACCCTATCAATGTTCGATTTGCGGGAAGTCATTTGCGCAAATTAGTACACACAAAGCACACATGCTTACGCACAGCGATGAGTTCAGATTCCCATGCACTGAGCCGGGATgtgataaaaaatttaaacaagCCACTAACCTGAAATTGCATATGCGCGTTCATACAAAAGAAACACCATATAAATGTGAGGATTGTGGGCGAGGCTTTGCACAACTGGTTACATATCGAAACCATCGACGCATTCACACCGGTGAAAAGCCATTCCATTGTACTTATGATGACTGTGGCAAAAGTTTTCGACatcgaaattcatttcgacGACATTTACAAaCGCACACCGGCGAAAAACCATTCGAGTGTCAAATATGTTTTAAGAGATTGAGTCAAACGTCATCGTACATCTCCCATATGAAAAGACAccaaaaatccgaaaaaagTTGA
Protein Sequence: MDTFYPKFGEVELVLVDDDNDFYDPLESNFEIEDKEETKLQLDDTVYDESQFHLVSDESSNSIADAVGAESIKQEVSHENSDKIPNISVKIEKNCESSNDSFDIEDNVQCYDSDSLSDEYETKPNLEEILPIDDNITNPSANKSEQIDKTESKPPICETKSKQKGSKVKTKIENVAAEASTSKTKVKKEPNVTKKRLKDIKKVEISTEKSTRQYSRRNEIPKEAVHNEAYDKKLLNCKICNIQFDKSPFFTEHMREKHSIDKPFECFICQKAYRISSLLAEHIRYHFGEKPYKCKYEFCDRSFSQLQPYKAHIRKFHTLERPYKCDFVDQNNVKCDESFFDTKTYKFHMREHTGSHPFTCEFCEKKFDHSGQYQAHVRIHTNEKPYQCSICGKSFAQISTHKAHMLTHSDEFRFPCTEPGCDKKFKQATNLKLHMRVHTKETPYKCEDCGRGFAQLVTYRNHRRIHTGEKPFHCTYDDCGKSFRHRNSFRRHLQTHTGEKPFECQICFKRLSQTSSYISHMKRHQKSEKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -