Cnas010148.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- Bcl11a
- Assembly
- GCA_009176525.2
- Location
- NW:3088691-3090859[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.064 2.4 8.5 0.4 1 20 105 124 105 126 0.93 2 11 0.0012 0.046 13.8 4.5 1 19 134 152 134 154 0.97 3 11 0.0054 0.2 11.8 1.7 1 23 256 278 256 278 0.97 4 11 0.0013 0.049 13.8 8.1 1 23 284 306 284 306 0.98 5 11 1.7e-05 0.00064 19.7 0.7 1 23 309 331 309 331 0.98 6 11 0.00098 0.037 14.2 1.5 3 23 341 362 339 362 0.97 7 11 0.00014 0.0051 16.8 0.2 1 23 385 407 385 407 0.94 8 11 4.3e-08 1.6e-06 27.9 1.5 1 23 413 435 413 435 0.99 9 11 3.1e-06 0.00011 22.1 0.6 2 23 442 463 441 463 0.96 10 11 2.1e-06 7.7e-05 22.6 1.8 1 23 471 493 471 493 0.98 11 11 0.00022 0.0082 16.2 1.9 1 23 499 523 499 523 0.94
Sequence Information
- Coding Sequence
- atgtcgattttttgCCGTTTATGTGCGGAGACAAAAGATCCATCTAATATTGTAACATCAATTAACGATCCGGAACGTTCgattgaacgaaaattgattGCGTGTTGTCAATGGAATCCACAAAATACTGATTTTGAGTTGCCGCAagatgtttgtttgttttgttatgaaaGATTAGAAAATAGCTGGTTATTTTTACAAAGCGTTCAATCGGCTCagcgaaaaatacaaaatatttgtgaaaatgattCGGGGATCTCTAAGCCGATATCATTGTCAACAGCATCAACAGCCAAGACGTCGAAGTCAACATTTCAGTGCAATAAATGCGAGAATATTTTCCCTTCACGGATTGCAATGGAGAAACACGAATGTATTTCATCACGTGATGATTCACACTTTAAATGTAACATTTGCCAAAAAACATTCAAAACCAGGGGCAGCTTTCTTACGCACTGCAAGAATCAGGGCAAACTGAAGTGTGATATGTGCTTGGACTTGTTTTGCAGCTATAAACTACTGGAAAAGCACAAGAAACAGGCCTGCACCCATTTTATTGATAGCTTGGATATAGTTGAAAGTAAACCAACGTTCGTTGACTGTAGCTCTGAAATAGGTGGTACCGGTGGTGTTGATATCGTCGAACACGAAGCCGAAACATCGACGGAATTTGACTTTCCTCCGATCcaatttcgattcaatgaaaGCGGTGATCTTGAACCTCcaattcgaaattcatttccGAGAGACCAAAGCGATCGAGAATATTATTGCTATTTGTGTAAAAGAGGTTTCAAGAAATTTCCACTACTCAAATATCACATGGTCGTTCACACATTGCCTCGTCGGTTCAAGTGCCAGTATTGTAACTCAAGATTTCGTACACAACGTCATTATACATCGCATCAAAAGAATCACATCGATTACTTTTGTGATGTTTGCAGCAAAAAATTTCCAAGCGCATTCGCGCTCAAGGTACATCGTCGAATGCATATGGGCGCAAGCgttaaaatgtatggatgtgaaGAGTGCGACCATTTCTTTGTGGATGTTTCGACTTACTATAACCACATGAGAAGAAGACATGGACTTGATACAGCGGCTGCCAAGAAAAAAGCCAAACTTGTACAACCCAATGGAACTGCCAAACCATATGTCTGTGAGCAGTGTGGAAAAGACTTCATGGAACGCAGTTCATTAAAGGCCCATTCGGTAGTGCATTTGGATATTCGACCTTTCCAATGCAATGTTTGTCCAAAAGCATTTAAGAATAAGTACAACTTGAAAACACATCTAGAAACACATTCGGGTGAGCGGTCTGTTCAGTGCACGGAATGTGGAAAGAAATATAGCCGAAAAAGTGTTTTGCTGAAACACATGGAAGAGCATACCGGTGTTTTTACTAAAACATTTCCTTGTGATTTTTGCGATCGAGTCTTTCGTTCTCTTTACAACATGCAAAACCATCGTCGTACGCACACGGGAGAGAAACCATTTCGTTGTGAAATTTGTAACCATGATGTTACAACAAAGTCTCAGCTAGATCGTCATCTCAAGACGCTTTCCCACACTAATcagttaaataaattaaatgaaacctTAAGTTTCGAAGAGAGACAGGATTATGTTTAG
- Protein Sequence
- MSIFCRLCAETKDPSNIVTSINDPERSIERKLIACCQWNPQNTDFELPQDVCLFCYERLENSWLFLQSVQSAQRKIQNICENDSGISKPISLSTASTAKTSKSTFQCNKCENIFPSRIAMEKHECISSRDDSHFKCNICQKTFKTRGSFLTHCKNQGKLKCDMCLDLFCSYKLLEKHKKQACTHFIDSLDIVESKPTFVDCSSEIGGTGGVDIVEHEAETSTEFDFPPIQFRFNESGDLEPPIRNSFPRDQSDREYYCYLCKRGFKKFPLLKYHMVVHTLPRRFKCQYCNSRFRTQRHYTSHQKNHIDYFCDVCSKKFPSAFALKVHRRMHMGASVKMYGCEECDHFFVDVSTYYNHMRRRHGLDTAAAKKKAKLVQPNGTAKPYVCEQCGKDFMERSSLKAHSVVHLDIRPFQCNVCPKAFKNKYNLKTHLETHSGERSVQCTECGKKYSRKSVLLKHMEEHTGVFTKTFPCDFCDRVFRSLYNMQNHRRTHTGEKPFRCEICNHDVTTKSQLDRHLKTLSHTNQLNKLNETLSFEERQDYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -