Basic Information

Insect: Contarinia nasturtii
Gene Symbol: -
Assembly: GCA_009176525.2
Location: NW:790929-795926[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0086 0.32 11.2 1.1 1 23 201 224 201 224 0.97

2 18 2.3 84 3.6 0.8 1 23 262 284 262 284 0.96

3 18 0.53 20 5.6 1.5 1 23 289 312 289 312 0.91

4 18 0.00027 0.01 15.9 0.5 1 23 324 346 324 346 0.98

5 18 5.6e-07 2.1e-05 24.4 0.4 1 23 352 375 352 375 0.98

6 18 0.0016 0.059 13.5 3.4 1 19 381 399 381 403 0.92

7 18 2.6e-05 0.00097 19.1 1.9 2 23 410 431 409 431 0.97

8 18 6.2e-05 0.0023 17.9 5.1 1 23 437 459 437 459 0.97

9 18 0.014 0.51 10.6 0.2 1 23 465 488 465 488 0.95

10 18 8.1e-06 0.0003 20.7 1.9 1 23 735 758 735 758 0.97

11 18 1 37 4.7 1.9 1 23 796 818 796 818 0.98

12 18 0.094 3.5 7.9 1.5 1 23 823 846 823 846 0.94

13 18 0.00017 0.0061 16.6 0.6 1 23 854 876 854 876 0.97

14 18 0.00021 0.0079 16.3 4.7 1 23 882 905 882 905 0.96

15 18 2.8e-05 0.0011 19.0 4.5 3 23 913 933 912 933 0.97

16 18 0.00013 0.0048 16.9 0.6 2 23 940 961 939 961 0.97

17 18 0.024 0.91 9.8 4.7 1 23 967 989 967 989 0.98

18 18 0.011 0.42 10.8 0.2 1 23 995 1018 995 1018 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0086	0.32	11.2	1.1	1	23	201	224	201	224	0.97
2	18	2.3	84	3.6	0.8	1	23	262	284	262	284	0.96
3	18	0.53	20	5.6	1.5	1	23	289	312	289	312	0.91
4	18	0.00027	0.01	15.9	0.5	1	23	324	346	324	346	0.98
5	18	5.6e-07	2.1e-05	24.4	0.4	1	23	352	375	352	375	0.98
6	18	0.0016	0.059	13.5	3.4	1	19	381	399	381	403	0.92
7	18	2.6e-05	0.00097	19.1	1.9	2	23	410	431	409	431	0.97
8	18	6.2e-05	0.0023	17.9	5.1	1	23	437	459	437	459	0.97
9	18	0.014	0.51	10.6	0.2	1	23	465	488	465	488	0.95
10	18	8.1e-06	0.0003	20.7	1.9	1	23	735	758	735	758	0.97
11	18	1	37	4.7	1.9	1	23	796	818	796	818	0.98
12	18	0.094	3.5	7.9	1.5	1	23	823	846	823	846	0.94
13	18	0.00017	0.0061	16.6	0.6	1	23	854	876	854	876	0.97
14	18	0.00021	0.0079	16.3	4.7	1	23	882	905	882	905	0.96
15	18	2.8e-05	0.0011	19.0	4.5	3	23	913	933	912	933	0.97
16	18	0.00013	0.0048	16.9	0.6	2	23	940	961	939	961	0.97
17	18	0.024	0.91	9.8	4.7	1	23	967	989	967	989	0.98
18	18	0.011	0.42	10.8	0.2	1	23	995	1018	995	1018	0.94

Sequence Information

Coding Sequence: atgttttcattgtgtCGATTGTGTGCGAAACATACGAATGCGTCCGATTTAACGACTGAAGTGTGTGATataacatcaaaattgaaagtttGTTGTGGATGGAAACCAATAGAAAATGATGCAGAAATGATGCCAAATAAAGCATGCAATTTGTGCGTGGAAAATCTTCAACAAAGTTGGAATTTTGCCGAAAGTATATGGGCTGCACAACAGCAACTCATTAAATTGGCCAGTGAAGTGCATCCACAAACTGATATCGATCCCATGTCGTATGTTGAAGGAATTATCGatgattcaataaaacatGAGCCGGATAACAGATCTGAAACAGATGAAGATCATCAACAATTTGACACCGAATTATTCGTTGAACCTATTATTAAATCAGATTTCGACAGTACACATgccaaaaaaacaattcgaagGAGTAAAAAGTCAGCGAAAAAGGTGGAAGAGAAAGCGAGCTCAACATGTGACTCATTTATGGCCGCAGTTTATGACGAAGATCAACTGGCCGACGGCACAATACGTGCAAGTGCTGTTGCCAGGCTTGAAAAACTATTTcctgaaatgaaaacgataatATGGAACGAATGCAAATACATCTGCAAAAAATGCGATCAAATCATTAAAAGTCCACAAAACTTTTTTGCACATAATCGATCGTTTCACCTGGAAGAAACTCCAACGATGGatttcttctgtttttattgtaattcCAAACATAGGCgtgaacattttttaagtCGTCACATGGCTGTGGAACACTTTCCCCATTTGAAATACAGATGCTATTATTGTCCGGACTATTTTTGGGATCCTCgtgaacaaatgaaacatcaaaatatgCATACAGACGTTGAATACAAGTGCGAAGTGTGCGAATTAGTTTGCTGTAATCGTGATATTTTATATGCGCACGTTTCACAGATTCATCTAAAGAAGAAATATACCGATCCGGATGCAAAATACACATGTGAACTTTGTAATAAAGATTTTGTCACAAAATGGGGCATCAAAACTCACATGCTACAACATACCAAGAAATTTGACTATGTATGCGATCAATGTGGTTGGAAGTTCAAAACCAAGGGAAATCTGAAAGGTCACATGGAAACGACACATACGGATGAAAAACCATTTGCTTGTAAACAGTGCGAAAGAAGATTCAAGACAAAACACCAATTAAAAAGCCACGATGAAATGCATTCAGGATTAAAGAAAGTGGAGTGTACGGTGTGTCATAAAAGGGTCCGCAAGCAGTATGATTTGACGGTTCATATGCGAAGCCATAATAATACGTATCCCTATAGTTGTAAATATTGTGAGAAAAAGTTTCGTCATACGAGCAGCCTAAGGACTCATGAACgcgcacacaaaaatgataaaccATATGCATGTGGTCAATGTGCTTATCGATCGACAAATTGGCCCAATCTGAATAAACATTCAATGCGGATTCACTCAATTgatttgagaataaaaaaaggaaacctCTTGGCCACAGAAACCATGGCGACAACACAGCTGTCAACGAAACGTCagtttcacattttaaacGTCAAATGCTGTAAACAAATATGCCagtatttttttcggttcgcTAAATACGACactgaaatattgaaatattgcgaaagagagaaaatgttgtCTTTGTGTCGTTTGTGTGCCAATCGCATAGATGATCTTGAAGCAACTGCAGATATATCAGAATTATGTCCAAAATTAATGTTCTGTTGTGGTTGGAGGTTATCAGAAAATGAATGGCAAATGCCTCAAAAAGCGTGTCGGTTATGTGTTGATGAGCTTCAAAGAAGTTGGAATTTTTCTGAACGGATTCGACTGGCCGCAGAAAAACTCCATATACTTTCACGCCAATCAATCGGCAATGAACCCGTTGTTCAGATCAAAGAGGTAGTAAAAGAAGAAATAGAGTGTTCACCCGAATTTGAAAATCTTCAAGCATCTGCTTTCAATCCACCGTCTATTCGATCGAATTGTGAAAGTTTACAAAAGAACTTCAAAAAACGTGAAAAAGTATTCAAAAAAACTgctgaaaaaacaaacacaaatccAGACTCCTTCCTAGCCCTATTGACTGTTAACGACCGTTTGGCTGATGGTAAAATAAGCGAAACCGGTGTTGCCAAACTTGAGACAGAATTTCCTGATATGACCATGACATGGAACGATTGCCAGTACATCTGtaaaaaatgtgacaaaacCTTCAAAAGTCCACAAAATTTCTTCGCACACAATCGATCAGTTCATGTCGAAGAActtctttcaaatgaaatttgctgtttttattgCAACGCAAAGCATAAACGTGAATATCTTCTTGATCGACACATCGCCGACGACCATTTTcctcatttaaaattcaaATGTTTTTACTGTACCGCATACTTTTGGGATgtacaaaaattgattaaacatCGTAGTACCCACAAAGACGTTCAatacaaatgtgaaatttgcCAGCACATTTTATATAGCCGGGATTTGTTGTACACACATGTGTCACAGacacatttgaagaaaaattgggGTGAATTCATTTGTGATATTTGCTCGAAGACATTTGCTACCAAAGACAGAATCAAGAGTCACATGATTAATCATTCCGGAAAATGTGACTATGTTTGTGATAAATGCGGGTCCACTTTTCGCCAAAAGTGTAATTTAAAACATCATGTGGAGTCAATGCACAATGTTGAGAAATCAGTGGCTTGCAACCAATGTGATAAGAAATTCACGACGAAACGACATCTAAAAATCCATCTGAAATATCATGGAGATGATAAGCCACTGAAGTGCACAATATGTGACAGTAGATTTCGTACAAAACAAGCACTGAAATACCACATCATAGTgcatacaaataattttccattcgagTGTactttttgtgataaaaagtTCAAGCATAGGATCGTTAAAAAGGTTCATGAACGTACGCATACAAATGAAAAGcCATATGCATGCAGTCAGTGCGACTACAAGAGTGCGAACATcggaaatttaaataaacattctCTACGAATTCATTcaaTTGATCTACGGACGAAAAAGGATggaaaaccaaattcaaattaa
Protein Sequence: MFSLCRLCAKHTNASDLTTEVCDITSKLKVCCGWKPIENDAEMMPNKACNLCVENLQQSWNFAESIWAAQQQLIKLASEVHPQTDIDPMSYVEGIIDDSIKHEPDNRSETDEDHQQFDTELFVEPIIKSDFDSTHAKKTIRRSKKSAKKVEEKASSTCDSFMAAVYDEDQLADGTIRASAVARLEKLFPEMKTIIWNECKYICKKCDQIIKSPQNFFAHNRSFHLEETPTMDFFCFYCNSKHRREHFLSRHMAVEHFPHLKYRCYYCPDYFWDPREQMKHQNMHTDVEYKCEVCELVCCNRDILYAHVSQIHLKKKYTDPDAKYTCELCNKDFVTKWGIKTHMLQHTKKFDYVCDQCGWKFKTKGNLKGHMETTHTDEKPFACKQCERRFKTKHQLKSHDEMHSGLKKVECTVCHKRVRKQYDLTVHMRSHNNTYPYSCKYCEKKFRHTSSLRTHERAHKNDKPYACGQCAYRSTNWPNLNKHSMRIHSIDLRIKKGNLLATETMATTQLSTKRQFHILNVKCCKQICQYFFRFAKYDTEILKYCEREKMLSLCRLCANRIDDLEATADISELCPKLMFCCGWRLSENEWQMPQKACRLCVDELQRSWNFSERIRLAAEKLHILSRQSIGNEPVVQIKEVVKEEIECSPEFENLQASAFNPPSIRSNCESLQKNFKKREKVFKKTAEKTNTNPDSFLALLTVNDRLADGKISETGVAKLETEFPDMTMTWNDCQYICKKCDKTFKSPQNFFAHNRSVHVEELLSNEICCFYCNAKHKREYLLDRHIADDHFPHLKFKCFYCTAYFWDVQKLIKHRSTHKDVQYKCEICQHILYSRDLLYTHVSQTHLKKNWGEFICDICSKTFATKDRIKSHMINHSGKCDYVCDKCGSTFRQKCNLKHHVESMHNVEKSVACNQCDKKFTTKRHLKIHLKYHGDDKPLKCTICDSRFRTKQALKYHIIVHTNNFPFECTFCDKKFKHRIVKKVHERTHTNEKPYACSQCDYKSANIGNLNKHSLRIHSIDLRTKKDGKPNSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -