Cnas007666.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:4114220-4120136[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.057 2.1 8.6 0.2 2 23 224 246 223 246 0.93 2 21 9.7e-06 0.00036 20.5 0.5 2 23 313 334 312 334 0.97 3 21 0.07 2.6 8.3 4.4 2 23 355 377 354 377 0.97 4 21 0.00051 0.019 15.0 1.7 1 23 410 432 410 432 0.98 5 21 2.5e-05 0.00092 19.2 1.7 1 23 440 463 440 463 0.97 6 21 0.0051 0.19 11.9 4.3 1 23 470 493 470 493 0.92 7 21 0.00018 0.0066 16.5 3.1 1 23 500 523 500 523 0.96 8 21 0.0033 0.12 12.5 0.3 2 23 562 584 561 584 0.96 9 21 0.00034 0.013 15.6 0.5 1 23 589 611 589 611 0.97 10 21 0.031 1.2 9.4 1.9 1 23 617 640 617 640 0.97 11 21 0.044 1.6 9.0 0.8 2 23 871 893 870 893 0.95 12 21 2e-05 0.00076 19.5 1.7 1 23 926 948 926 949 0.96 13 21 0.00093 0.035 14.2 1.4 1 23 958 980 958 980 0.96 14 21 0.27 10 6.5 1.5 2 23 1003 1025 1002 1025 0.94 15 21 0.0074 0.28 11.4 2.8 1 23 1058 1080 1058 1080 0.95 16 21 4e-06 0.00015 21.7 1.4 1 23 1088 1111 1088 1111 0.97 17 21 0.0051 0.19 11.9 1.5 1 23 1118 1141 1118 1141 0.92 18 21 2.7e-06 0.0001 22.2 0.5 2 23 1149 1170 1148 1170 0.97 19 21 0.026 0.97 9.7 0.9 2 23 1209 1231 1208 1231 0.97 20 21 0.00014 0.0053 16.8 1.0 1 23 1236 1258 1236 1258 0.94 21 21 0.094 3.5 7.9 2.8 1 23 1264 1287 1264 1287 0.97
Sequence Information
- Coding Sequence
- ATGTCGACGCTTAGTTCATGTCGTTTATGTTTAGCCGAGAACAATGGCAATCACTTGGATATATTTGGTGTCACTGGAATTGAGAAAAACATAAGCGAAATAATTGCCGAACATTTCAAGTGCGAgattCGTTCCAGTGATTCATTGCCGAATTTCGTGTGCGAAATGTGTTGGCGGATAACGGAAGCGTTTCATGAATTATATCAAAAGTCAAAAGTTGTGCATGAAAAGTTATTAACGAATCCACCGATTAAAATTGAAGCAGATTTCGTCGAACTATGGGCAAGCACCAAGGTAATTCAGTATATGGAAGAGCCAAACATAGACATTGAGCCAATTAAAGTCGAACCGAATTCAGaaTTAGAACACGATATACATGATTTGACAACGAATGCGAACGATGAATCGGATTCGAATGCCAATGATCCAGTTAtggattttgatgaaaataccGATTCGGATGAGAATAGCAGCGATGAGAGTAGCAGCGAAGATGACAATGTTGAACCCAGTTTTGAAGACATAAAAGAACCAACGAAGGAAAAATCACGGAAACGACAAAAAACAGTTAAACCCAAAGATAAGCCAACACGAAAAAAGGAGAAAACAAAAGTAGTCAAaggaaaatttgaaaaactgTTTGCCGAAAATAAGCATTTGTTCGATATGTCATGTGATTTATGTCCAACtatattcaaaacattgtACGAGGCTAAAAATCATTACGTTAAGGTGCATAAAAGACAATACGGCTACATAAAATGTTGTAATCAACGACTTGTGTATCCATCAACGgtgttgaaacattttcaacgtcATTTGGacccgaacaaatacaaatgttcACAATGCGATAAAGTACTTTTGTGCGATCGTCAACTGGCTAAACATATTGCCAGACACAAGGAAGCAGTGAGCCCCAGAGAAAAAACTTTATCAtgtaatatttgtttgaaatcgtTTACAACACCAACTGGGCTGGCAAATCatatgaaaaaacacaaagaacGACCTGAAATGGATGTAAATCATGCGAAATTTATTGACGAAAATTTTGACATGAAATGTGATCATTGTGATACAATATTCACTGGATTCCATGATGCCCGTCGTcattataaaatgtttcataacGAGGAAAAAGGCTACCTCAAGTGCTGTAATGTGAAATTAAGAGAATTGTGGATTGTATCTGATCATATCAAATCACACTTGGATCCAACATCTTTTAGTTGTGATCAATGTGACAAAACGTTCACGACACGTGTGATATTGGTGCAACATAAGCGTCGCCATAGATTGACTTTGAACAAGAATTTTGTATGCGATTATTGCGGAAAATGTGTACGAGATAAAGATGCCATGTTACGTCACATGTTTACGAACCATGTTGACGTCGAACCAACACATGAATGCAATATTTGCCATAAGAAaTTTCGATTGCCTCAATTGCtgaaaaatcacttttattcggtTCATCGTGAGAAAAAAGTTATTTTCGTGTGTGATATATGTGGCAAGGCTTTTCACGTAAAATTCCATCTCGATAAACATATGCTGAATAAGCATACAGATAAATCGGAACGATTGATTGAACGAAAACAGTGTGAATATTGTGGTGAATGGCTTTTGACCAAAAGTGGCATTTTCTATCATCATCAAAAACACACGAGCGGCATTCAAAAATGTGATCAatgtcaaatggaattttccaaTCGAGTTGCATTGCTCGGACACATTCGACAATATCATCGAGAACACAAATTCAAGTGTGGATACTGTAATAAGACATTCGCCATCGGCTCAGCATTGAAGAAACACGAAGAAAGTCATACACGGCATAATACGTATCCATGTCGATTTTGCTCCAAAGTATTTTCCGTTATTTCTTCcagacaaacacacacaaagcGAAATCATGCCGAAGAATGGAAACAGAttaaagaaatggaaaaaattgaaaaattgggCATGGATTCTCAcaaagaaaaaactattatcgCCTTACGAATTGACGAGAAAAAATTCAGAATGTCAGACAGTTATCCGTGTCGTTTGTGCTTTTCAACTGACACTGACCGTCACATGAATATATTCAGTGATGTCGGCATTCAGCTGAAAATGAGCGAAATTATTGGCGAGCATTTTAAATGCGAAGTAAGCGAAGCAGATTCTTTACCGAATTTTGTATGTAATCTATGCTGGCAGACAACGGAATCCTTCCATGAACTGTACCAAAAGTCAAAAGCCGTGCAGGAAAAATTTCTTAATCCAATGATTAAAGTTGAAGTTGACACGATTGGGATGTGGCATGAAAATTTGGGACGTGACTTTGAAGATGATCTTCCAATTGATgttaatgaaatcaaatcggAATCGAATCTAGAATATGCCGACGTACTTGATCCTCGAAACGATTTTGAAGAAGTGCACGAATTAAGTGATCGAGACGTTGCGACGAATGACACTAGAGATGGTCAATCGAATTGTATTGAAACATCTTCAGACACGGAACAAGCAAATAAACCAATAAGTCGACGCATGAGAGCAAAGAATCGacgaattgaattcaaaaatttattctaTGAACATAAGCATCGATTTGATATGACATGTGATTTATGCTCACATGTTTTCGATACATTAAGCGATGCCCGAAATCATTATAATTACGCACATGGTAATCCTAGAGGATACATCAAATGCTGTAATAATAAACTATGGTTCCGCTGTGAAGTTATAAAACATATACAAAGGCATCTCAATCCAAATAAGTACAAATGTAACGAATGTGGAAAAGTGTATACCGCACCGCATGGACTCAAAGGCCATATAAAATCGCATCATACTCTACGAACCGAAAAAGAGTGGTTTATTTGTGATATTTGTAAAAAGAAATTCGCTTCGAAAGTTGGAATAAAGCGACATTTACATTGGCATACCGAAAGCAAGAAGAAAACTGAAGACgatcaacataaaaaatttattgccGAAAATTTTGACATGTCATGCGATCTTTGTGAAAcgattttcattacatttcacGATGCACGCCGTCATTATAAAGAGTttcacaacgaaaaaaaaggataCATCAAATGCTGTAATATTAAATTAAGAGAGTTGTGGATTGTAACGGATCATATACTCTCCCACTTGAATCCATCTAATTTCAAATGtgatttttgcaataaatctTTCTCGAGTGGTATGCGATTAAAACAACACAAAGGTAGACATCGGCGAGTCATTGAACGGCCATTTACTTGCGATATTTGTGGCAAAACATTCCGCGATAAAGAGACGATAACACGACACTTAttcacaacacacacaaatacggAGCccaaatttgaatgtgaaatttgCCATAAACGATTTCAATTGGCGGCATTGCtaaaaaatcacttttattcggtGCACCGTGAGAAGAAAGCAATATCAACGTGTGAAATTTGTGGAAAATCATTCAGTGTAAAGGCAAATTTTGATAAGCACATGCTATCTCATAGCGACAAAACAGAACGATTGGCACAACGAAAACAATGTGAACACTGTGGTGAATGGCTGATGACAAAAAGTGGCATTTATTATCATGAACAAATTCATACGAGTGGCAtccaaaaatgtgaacaatgtcACATGGAACTTCCCAATAAAATTGCCCTTTTATCGCACATTCGAAAATATCATCGTGAACGAAATCATAAATGCAGCTATTGTGATAAATCATTTCCAGTCGGCTCCGAATTGAAAaAACATGAAGAAGGACACACCAGACATAATGTATATCCTTGTCAATTTTGtacgaaaatatttacactACGAACATCTCGACTTACACATCAAAAGCGATCTCATCGCGAAGAGTTAAAACAATTaagagaaatgagaaaattaatgaaaaattctgCAGCGAGCATGGACTTagcgaaagaaaaagtttaa
- Protein Sequence
- MSTLSSCRLCLAENNGNHLDIFGVTGIEKNISEIIAEHFKCEIRSSDSLPNFVCEMCWRITEAFHELYQKSKVVHEKLLTNPPIKIEADFVELWASTKVIQYMEEPNIDIEPIKVEPNSELEHDIHDLTTNANDESDSNANDPVMDFDENTDSDENSSDESSSEDDNVEPSFEDIKEPTKEKSRKRQKTVKPKDKPTRKKEKTKVVKGKFEKLFAENKHLFDMSCDLCPTIFKTLYEAKNHYVKVHKRQYGYIKCCNQRLVYPSTVLKHFQRHLDPNKYKCSQCDKVLLCDRQLAKHIARHKEAVSPREKTLSCNICLKSFTTPTGLANHMKKHKERPEMDVNHAKFIDENFDMKCDHCDTIFTGFHDARRHYKMFHNEEKGYLKCCNVKLRELWIVSDHIKSHLDPTSFSCDQCDKTFTTRVILVQHKRRHRLTLNKNFVCDYCGKCVRDKDAMLRHMFTNHVDVEPTHECNICHKKFRLPQLLKNHFYSVHREKKVIFVCDICGKAFHVKFHLDKHMLNKHTDKSERLIERKQCEYCGEWLLTKSGIFYHHQKHTSGIQKCDQCQMEFSNRVALLGHIRQYHREHKFKCGYCNKTFAIGSALKKHEESHTRHNTYPCRFCSKVFSVISSRQTHTKRNHAEEWKQIKEMEKIEKLGMDSHKEKTIIALRIDEKKFRMSDSYPCRLCFSTDTDRHMNIFSDVGIQLKMSEIIGEHFKCEVSEADSLPNFVCNLCWQTTESFHELYQKSKAVQEKFLNPMIKVEVDTIGMWHENLGRDFEDDLPIDVNEIKSESNLEYADVLDPRNDFEEVHELSDRDVATNDTRDGQSNCIETSSDTEQANKPISRRMRAKNRRIEFKNLFYEHKHRFDMTCDLCSHVFDTLSDARNHYNYAHGNPRGYIKCCNNKLWFRCEVIKHIQRHLNPNKYKCNECGKVYTAPHGLKGHIKSHHTLRTEKEWFICDICKKKFASKVGIKRHLHWHTESKKKTEDDQHKKFIAENFDMSCDLCETIFITFHDARRHYKEFHNEKKGYIKCCNIKLRELWIVTDHILSHLNPSNFKCDFCNKSFSSGMRLKQHKGRHRRVIERPFTCDICGKTFRDKETITRHLFTTHTNTEPKFECEICHKRFQLAALLKNHFYSVHREKKAISTCEICGKSFSVKANFDKHMLSHSDKTERLAQRKQCEHCGEWLMTKSGIYYHEQIHTSGIQKCEQCHMELPNKIALLSHIRKYHRERNHKCSYCDKSFPVGSELKKHEEGHTRHNVYPCQFCTKIFTLRTSRLTHQKRSHREELKQLREMRKLMKNSAASMDLAKEKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -