Cnas010299.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:959267-962444[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.15 5.5 7.3 0.2 2 23 25 46 24 46 0.95 2 19 0.033 1.2 9.4 0.7 2 23 188 210 187 210 0.96 3 19 0.062 2.3 8.5 4.2 2 22 217 237 216 237 0.94 4 19 0.0058 0.22 11.7 0.4 1 23 260 283 260 283 0.96 5 19 6.3e-05 0.0024 17.9 1.4 1 23 289 311 289 311 0.98 6 19 0.025 0.94 9.7 0.5 1 23 346 369 346 369 0.95 7 19 3e-05 0.0011 18.9 3.2 1 23 375 397 375 397 0.97 8 19 0.0007 0.026 14.6 2.6 2 23 433 455 432 455 0.89 9 19 0.00032 0.012 15.7 3.1 1 23 461 483 461 483 0.95 10 19 7.8e-05 0.0029 17.6 2.6 1 23 522 545 522 545 0.97 11 19 8.8e-06 0.00033 20.6 5.9 1 23 551 573 551 573 0.98 12 19 0.0019 0.07 13.3 0.1 1 23 605 628 605 628 0.96 13 19 1.2e-05 0.00046 20.1 2.0 1 23 634 656 634 656 0.98 14 19 0.0004 0.015 15.4 0.9 1 23 692 715 692 715 0.97 15 19 0.012 0.45 10.7 3.0 1 23 723 746 723 746 0.91 16 19 0.0054 0.2 11.8 1.1 1 23 762 784 762 784 0.97 17 19 0.0011 0.043 13.9 1.7 2 23 790 812 789 812 0.95 18 19 0.055 2 8.7 0.4 3 23 820 843 818 843 0.89 19 19 0.022 0.81 9.9 0.7 3 23 852 873 851 873 0.91
Sequence Information
- Coding Sequence
- atgatGGCTTCAGTTAGTAATTCAGTTGTTTCGCATCTGGCGTCCATCAAGGAAGATGTCAACGATTGGCTTTATTGTCAGTTTTGTCCTCTAAGTTTCGCCATAAATGAAGAATTTGAGCTACACACATACAGTCACTTCAAAAGTCGTACATGTTCAGGCTGTAATGTAcgtctttttcaaatttgcaaCGATTGGTATGAAATTCACACAACAGCCAAttgtaaaaacaacaatcacaTCCATTCGTTCGGCACCAATAACGCAGCCGATGATGGCATCACGATCAAACAGGAGCCCATAGCCGAAATGGAAACAGTTGAATTGGATGAATTGCTCGATGTAAAAACTGACGTCGATTTTAATGATTTCGGTGAGGTGTTTGCAACGTCTCTAAATACAACACTTGAAATTGCTGAAAATAACTTAAACACCGCCAATGTTCCACAACAAATGGCCTACAGTCAGCAGTTTTCAAAGCCACAGTTAAAGTTTCGCGTTGTCAATATTAAGATGAAAGAAACAgttgaaacagaaaaaactaAACGCACCAGAGGAATCAAGTGTCGATTTTGCGACAAAGTATTGCAAACCCGTTTCTGGTTGGACAACCACATTCAAAGCTATCATAGTGTtgacaatgaaacaaaatgcaagcattgcaatcaaaaattccaatcgTTTCAACAATTGgataaacatttgaaaagaTGTGCCGGGAATAATCGAAAACGGATTTTCAAGAGGTTTATTCATCCGCATCGGCCAAAAGAAAATTTCCAATGCGATTTATGTGGCaatgtattgaaaaaattcCGTACACTTGAAGATCATATGAAAGAAGTTCACTCAAATGAATGTTCATTCGAGTGTCGCATATGCGGACGATTCTATCCGAGCCGGTATTATTTGAGcaaACATCTATTGCGGCACAAACAAGGTAAAGCCAGTGATACAGAAAACGTTGATTTGGATACAGATTTGATGGAAAGACGTAAATACACACGAGTACATCCGCATCGACCGAAATCGAATTTTACATGCGatatttgcaacaaaaaaatatcgcgTTTTGATATCCTCGAAGAACACATGAGCAATAATCATTCAGCTCGGGATAGTTTTCGATGTCGCATCTGTGGACGCTGCTATCCCAGTAGATATTATCTGCAAAAACACATTGGACGTCACAAGAATGGCAGTCAGCATCAACCGGCGGATGAGGATTTTGACAAAGGTTTGATGGAACGCAATAAATATCACAGACATGATCCAAATCAACGAACACAAGATTTGACCTGTGATGAATGTGGAAAAGTTTTCAAACATCATAACATGTTAATGGAGCACAAAACCGCACGACATTCAGCCGAAGCTACATTTCTGTGTCGAAAGTGTAATCGATTTTATCCGAATAGATACTACTTGGCAAAGCACATGAAGCGTCACGAGgagttggaaaaaaattgcatatcaATAGATCAGTTCGAAGGAGATTTGGATGAAGATCTAGTTGCTAGAAATAAATACTTACGACCCGATCCAAATGAAACAAAGTCATCATATGATTGCGACGAATGTGGCCTTACTTTTACGAAATTCCACAAACTGACTGAGCACATTCGATCGAAGCATTCCGATGATAATGGTTATCGGTGTACTAAATGCGGTCGATGCTTTCCAAATCGTTATTACCTTacaaagcacaaaaaaatccatgaaAATAACACCCGCAGCATTAATGTCACAGATGATGAGTCTAACGAACAACGGCCATACACAATTAATCAACCACATCAACGGAATAGTACATTTGTTTGCAACACTTGTGGTATGATATACCCTAAATACGAACTGCTACAGGAGCACATTTCTTCGAATCATACCAGTTTGGAGAGCTTCATGTGTGGTGTTTGTAATCGTTCATATCCAAATCGGCATGATTTGGTGAAGCATATGAAACGGCATCAAAGCGATACAAAGGTCGAAGAAAAAATCGCAAATGTTGTCGAAGAAAATCTTGTGAAAAGGCACAAATATTTCCGTGCCCATCCTCATCGTCCGGTGTccaattttgaatgtgataTTTGCAAAAAAGTCTTATCCAGCTTCTATTCGATGGAAGATCACATGAAATCGAAGCATtcgaaaaaatccaaaacgCGATATCCTTGTTCAAAGTGTAAAAAGGATTTCATGACGAAGAAACGACTAAAGCAACATGAAACACTAAAGCATTCTACCGTTAAGCCAGAAGTGGTCAAACCAAAGGTGGAAACAAAACATATGTGCTCAATCTGTGGACGTTTATTCCCAGAAAGATCGAAAATGATTATGCACGAAAAAACACATTCGGGCACCACGATATCGTGTGAAACTTGCGGTAAAGAATTTCTATATAAGCATTATCttcaaaaacacataaaaaatgttcatagtAAAGTGAAAAATTTGGCATGCGGTATTGATGGATGTGAATGGAAGTTTGCCTATCAGCAATGCTTGATAAGACATCGAGCCAGACGACACGGAATAGTAAAGAATCGAAATGCCTGTCCCATTTGCTCGAAAGAATTTCCAGAGAGCAAGTATCATCTCCAACGGCATCTCAAAGCACATGCAAACAACACAGCTAAAGAATATATACCCGAACCCAAGGATGAATCAtcgtcaaaataa
- Protein Sequence
- MMASVSNSVVSHLASIKEDVNDWLYCQFCPLSFAINEEFELHTYSHFKSRTCSGCNVRLFQICNDWYEIHTTANCKNNNHIHSFGTNNAADDGITIKQEPIAEMETVELDELLDVKTDVDFNDFGEVFATSLNTTLEIAENNLNTANVPQQMAYSQQFSKPQLKFRVVNIKMKETVETEKTKRTRGIKCRFCDKVLQTRFWLDNHIQSYHSVDNETKCKHCNQKFQSFQQLDKHLKRCAGNNRKRIFKRFIHPHRPKENFQCDLCGNVLKKFRTLEDHMKEVHSNECSFECRICGRFYPSRYYLSKHLLRHKQGKASDTENVDLDTDLMERRKYTRVHPHRPKSNFTCDICNKKISRFDILEEHMSNNHSARDSFRCRICGRCYPSRYYLQKHIGRHKNGSQHQPADEDFDKGLMERNKYHRHDPNQRTQDLTCDECGKVFKHHNMLMEHKTARHSAEATFLCRKCNRFYPNRYYLAKHMKRHEELEKNCISIDQFEGDLDEDLVARNKYLRPDPNETKSSYDCDECGLTFTKFHKLTEHIRSKHSDDNGYRCTKCGRCFPNRYYLTKHKKIHENNTRSINVTDDESNEQRPYTINQPHQRNSTFVCNTCGMIYPKYELLQEHISSNHTSLESFMCGVCNRSYPNRHDLVKHMKRHQSDTKVEEKIANVVEENLVKRHKYFRAHPHRPVSNFECDICKKVLSSFYSMEDHMKSKHSKKSKTRYPCSKCKKDFMTKKRLKQHETLKHSTVKPEVVKPKVETKHMCSICGRLFPERSKMIMHEKTHSGTTISCETCGKEFLYKHYLQKHIKNVHSKVKNLACGIDGCEWKFAYQQCLIRHRARRHGIVKNRNACPICSKEFPESKYHLQRHLKAHANNTAKEYIPEPKDESSSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -