Cnas005984.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:4851294-4857184[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0024 0.091 12.9 0.1 2 23 92 114 91 114 0.95 2 23 0.00022 0.0083 16.2 4.1 1 23 145 167 145 167 0.98 3 23 0.0011 0.04 14.0 2.1 1 23 175 197 175 197 0.96 4 23 0.035 1.3 9.3 2.2 2 23 220 242 219 242 0.93 5 23 0.0028 0.1 12.8 6.2 1 23 275 297 275 297 0.99 6 23 0.0049 0.18 12.0 2.3 1 20 305 324 305 328 0.89 7 23 0.015 0.57 10.4 3.8 1 23 335 358 335 358 0.91 8 23 1.3e-05 0.00047 20.1 0.4 2 23 366 387 365 387 0.96 9 23 2.2 83 3.6 0.4 2 23 399 420 398 420 0.91 10 23 0.18 6.8 7.0 2.2 2 23 426 448 425 448 0.97 11 23 0.0055 0.2 11.8 2.2 1 23 453 475 453 475 0.92 12 23 0.0077 0.29 11.3 4.0 1 23 481 504 481 504 0.97 13 23 0.19 7 7.0 0.3 3 23 727 748 725 748 0.94 14 23 0.011 0.42 10.8 0.6 1 23 781 804 781 804 0.96 15 23 5.2e-05 0.0019 18.2 0.9 2 23 816 837 815 837 0.97 16 23 0.079 3 8.2 3.7 2 23 859 881 858 881 0.95 17 23 6e-05 0.0022 18.0 1.7 1 23 914 936 914 936 0.99 18 23 0.0047 0.18 12.0 3.4 1 23 944 967 944 967 0.97 19 23 0.0013 0.05 13.7 2.3 1 23 974 997 974 997 0.96 20 23 0.00021 0.0079 16.3 1.2 3 23 1006 1026 1004 1026 0.96 21 23 0.0034 0.13 12.5 0.1 2 23 1065 1087 1064 1087 0.96 22 23 6.7e-06 0.00025 21.0 1.7 1 23 1092 1114 1092 1114 0.97 23 23 0.00065 0.024 14.7 2.5 1 23 1120 1143 1120 1143 0.98
Sequence Information
- Coding Sequence
- ATGCTTGAACAACAATTTAATGAGGATGGCATTGGAATGGTCAAAATTGAACCAAGTTTTGagGATTCACTTGATGGTCAACCAGATTTTGATGAATCGACTGAgttgaatgatgaaattacCAAAAAAGACTCAAACTTGAAAGATGAGAATCGAAAGGTTGCCGacaaaacacaaaatcttTGCCAAAATCGAAGGCAATCCAGCCAAGCTAAACAAAAGAagattgattttgaaaagatattttctgaaaataaaCATCGATTCGATATGTCGTGTGATGTGTGcccaaaatcatttgattcttTGGATGAGGCAAAGACTCACTACGCAACCGCTCACGATAATCCATACGGTTACATTAAATGctgtaatttaaaattgaattatcgATGTGTGATCAAAAAACATCTCGATTGGCACTTAGAAAAATTCAAATGTGAACAATGTGGAAAAGTGTGTCGTGAACATCAAGCGCTTAAAGTGCATATGAAACAACATTCAGACGATGCACGAGAACAGTATATTTGTGATCTGTGTAAAAAACGATTCACATCGAAAGTTGGAATAAGGCGCCATTTACATTGGCATACcgaaaacaacaagaaaactGACGATGATCAATGCCGAAAATTTATTGCCGACAATTTTGACTTGAATTGTGATCAGTGCAGTTATGTCTTCACCACATTTCATGATGCAAGACGTCACTACAAGGATTTACACAACGAAAAGAAAGGCTATATCAAATGTTGTgacatcaaattaaatgaatattggCAGGTCATCGATCATTATATCGGTCATCGAAATCCATCTCATTTTAAATGTGAGATATGTAACAAATGTTATGCCGATCGgaagaaattttatttgcacaaacGAAGGCACAATCAAGCGTCAACGATGtcatttatttgtgatttttgtggGAAAAAATTCCGAAGCAAAGAAACCATTTCACGGCATTTTTTCGCAAAGCACATTGACGCAGAACCgacatttgaatgtaaaatttgCCATAAAAGattcCAATTGATGTCTCTACTGCGAAATCATCATTATGCAGTGCATCGTGAGAAAAAGGAGAAACTTGTTTGTGAAACCTGTGGTAAATCGTTTAATGTAAAGGCAAATTTTGATAAACATATGCTATCACATGCTGATAAATCACAACGATTGGCACAACGTAAACAATGCGACCATTGCGGTGAATGGGTAATGAGCAAAAGTGGATTATATTATCATGAAATAATGCACAAGAGCGGTGTTCAGAAGTGTAATCAATGTGAAATGGAGCTACCACATAAATTGGCTCTATTGGCTCACATTCGAAAATGTCATAGAGAACTAAAGCATAAATGCAAATTCTGCGACAaatcatttgacattttgtcaAAGTTGaagGAACACGAAGACGGCCATACTCGACAAAATGTATATCCTTGTAAATACTGCAATAGAGCGTTCACCGTACAATGTTCAAGACAAACACATGAACGAAGAAATCATCCGGACGAGATAagggaacgaaaaaaaatgcgcaaaTTATTAGAATTTCCTGCACAAGCAAATACTTTTGTCCAAATGAGTGGAAAATGTTGCCGTTTGTGCTCGTGCACGAATGCCAGCAATTATTTGGATATATTTAGTGATGCtggaattgaaatgaacatcAGCAAAATAATTGGTGAACATTTCAAACACGAAGTTCGTGAATCCGATACGTTTCCAAATTATGTGTGCCAAAGTTGCTGGCAAACGACCGATGCTTTTCACGAGCTCTATGAAAAGTCCAAATtgtcaatggaaaaattcttGAATCCAACGATAAAATTGGAGACAAATTATTGGCAAAGTAACAATGAAGTTCATTACATAGAGGAATCTCAACTTCTCACAGACTCTGTCAAACTTGAACCAAGTATAGTGGACTcagattcaaatgaaaatgatcgaATTGACTtagatgaaaatacaaatgacGAGAATAGCAATGAAGAGAACAGTAATGAAGAAAGTGATGAGAATGGCAtgaatgaagttgatcaagACAATTCAGGTTTCAACAAAGAAAGACCAATTTccaaaaagaaacaacaaagaacaaaacgaaaaagtaAGGCATTAcagtttgaaaaattattcaccGAAAATCGGCAACTATTTGATATGAATTGTGATTTTtgcgaaacaaaattcgagACGCTCGATGATGCCCGACAGCATTACGCAAAAGTACATAAAAATCCAAAGGGATATATTAAATGTTGTAATATAAAACTTATATATCCATGCAAAGTCGTACAACATTTGCAACGCCATTTGGAACCTCTCAAGTTTAAATGTACCAAATGTCCAAAAGTTTATCTAACCGATCGCGAATTAGCCAAACACATAGACTCAAGACATAAAGGGGCGCCAATTCGTAAAGAGAAGACGGTACCATGTAAAATTTGCCGAAAAATGTTCACTACAGAACAAAGTCTGGACTATCATATGCGACGGCATCAGGAAAAAGATGAATCCGAAGACGGACAGTTTGTGAAATTTATAGCTGAAAATTTCGATATGAAATGTGATCATTGTGACACAGTATTCTCTGCATTTCATGATGCACGCCGTCACTACAAGGAATTCCACAATGATGATAAAGGCTATCTTAAATGCTGTAAAGTAAAATTAAGAGAACTGTGGCATGTACGCGACCATATTCGATCACATTTGGATCCCGAATGCTTCAAATGCAATGCGTGTGGCAAGAGCTTTTCAACGGGAATGATGTTGACCCAGCACAAACGACGCCATAAATTAACACTGAATAAAAGGTTCGTCTGTGATTATTGCGGTAAGCTTTGCAGGGATAAACATGCAATTATTCGCCATCTTTTTACAAATCACGTCAATTCTGAACCGGAATACGAGTGTGATGTTTGCCACAAAAAATTCCAATTGGCCTCACTGTTAAAGTCTCACAAATATACGGTGCATCGTGAGAAAAAGGCGAATCAAATTTGTTATATTTGTGGAAAAGGTTTCTATGTGAAGTTCCATCTCGATAAACATATGTTGTCGCATGCTGAGAAATCGGAACGATTGGCTGAAAGTAAACAATGCGAATGGTGTGGCGAGTGGCTGATGACCAGAAGTGGAATCTATTATCATCAACAAAAGCACACGAGTGGCATTCAAAAATGTGACGAATGTCAAGCAGAATTTACAAATCGTGTTGCATTGCTCGGACACATTCGACAGTACCATCGcgaacacaaattcaaatgtaccTATTGTGATAAAACTTTCGCCACCAATTCAAAGATGAAGGCACATGAAGAGTCTCATACACGGCATAAAGTATATCAATGTAGATTCTGTCCAAGAACATTTTCTGTTCCAAGTTCGAGGCGAACACATACACGAAGAAATCATTTAGAAGAAATtaaacgaagaaagaaaacggAAGACGTAACAATTGCACAAAAGAAACTAACTGTGGACAACTGA
- Protein Sequence
- MLEQQFNEDGIGMVKIEPSFEDSLDGQPDFDESTELNDEITKKDSNLKDENRKVADKTQNLCQNRRQSSQAKQKKIDFEKIFSENKHRFDMSCDVCPKSFDSLDEAKTHYATAHDNPYGYIKCCNLKLNYRCVIKKHLDWHLEKFKCEQCGKVCREHQALKVHMKQHSDDAREQYICDLCKKRFTSKVGIRRHLHWHTENNKKTDDDQCRKFIADNFDLNCDQCSYVFTTFHDARRHYKDLHNEKKGYIKCCDIKLNEYWQVIDHYIGHRNPSHFKCEICNKCYADRKKFYLHKRRHNQASTMSFICDFCGKKFRSKETISRHFFAKHIDAEPTFECKICHKRFQLMSLLRNHHYAVHREKKEKLVCETCGKSFNVKANFDKHMLSHADKSQRLAQRKQCDHCGEWVMSKSGLYYHEIMHKSGVQKCNQCEMELPHKLALLAHIRKCHRELKHKCKFCDKSFDILSKLKEHEDGHTRQNVYPCKYCNRAFTVQCSRQTHERRNHPDEIRERKKMRKLLEFPAQANTFVQMSGKCCRLCSCTNASNYLDIFSDAGIEMNISKIIGEHFKHEVRESDTFPNYVCQSCWQTTDAFHELYEKSKLSMEKFLNPTIKLETNYWQSNNEVHYIEESQLLTDSVKLEPSIVDSDSNENDRIDLDENTNDENSNEENSNEESDENGMNEVDQDNSGFNKERPISKKKQQRTKRKSKALQFEKLFTENRQLFDMNCDFCETKFETLDDARQHYAKVHKNPKGYIKCCNIKLIYPCKVVQHLQRHLEPLKFKCTKCPKVYLTDRELAKHIDSRHKGAPIRKEKTVPCKICRKMFTTEQSLDYHMRRHQEKDESEDGQFVKFIAENFDMKCDHCDTVFSAFHDARRHYKEFHNDDKGYLKCCKVKLRELWHVRDHIRSHLDPECFKCNACGKSFSTGMMLTQHKRRHKLTLNKRFVCDYCGKLCRDKHAIIRHLFTNHVNSEPEYECDVCHKKFQLASLLKSHKYTVHREKKANQICYICGKGFYVKFHLDKHMLSHAEKSERLAESKQCEWCGEWLMTRSGIYYHQQKHTSGIQKCDECQAEFTNRVALLGHIRQYHREHKFKCTYCDKTFATNSKMKAHEESHTRHKVYQCRFCPRTFSVPSSRRTHTRRNHLEEIKRRKKTEDVTIAQKKLTVDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -