Cnas011402.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Contarinia nasturtii
Gene Symbol
ci
Assembly
GCA_009176525.2
Location
NW:2023507-2026666[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 5.7e-05 0.0021 18.1 1.4 2 23 61 83 60 83 0.97
2 15 6.2e-05 0.0023 17.9 4.6 1 23 109 131 109 131 0.99
3 15 6.9 2.6e+02 2.1 2.2 2 23 136 155 135 155 0.78
4 15 2.5e-05 0.00095 19.2 5.9 1 23 163 185 163 185 0.98
5 15 2.3e-06 8.5e-05 22.4 3.8 1 23 192 214 192 214 0.98
6 15 0.0017 0.062 13.4 0.7 3 23 222 242 220 242 0.97
7 15 1.3e-05 0.00048 20.1 1.2 1 23 248 270 248 270 0.99
8 15 3.8e-06 0.00014 21.8 1.3 1 23 276 298 276 298 0.98
9 15 0.00027 0.01 15.9 5.5 1 23 304 327 304 327 0.96
10 15 0.00058 0.022 14.9 9.0 1 23 616 638 616 638 0.99
11 15 0.00024 0.0087 16.1 1.1 1 23 644 667 644 667 0.97
12 15 0.00027 0.01 15.9 9.9 1 23 673 697 673 697 0.98
13 15 0.00029 0.011 15.8 0.5 1 23 703 725 703 725 0.98
14 15 0.028 1 9.6 6.7 1 23 731 753 731 753 0.99
15 15 0.00015 0.0055 16.7 2.4 1 23 759 782 759 782 0.97

Sequence Information

Coding Sequence
atgGATTTGTtgacaccaaaaatagaaatttttaTTGAGGATCATGATGAATCAATGattgatgataaaatatacgataaaaacaattcaagcAGCGGGCTGACAACGAAAATTACCATCGATAAGGATATTAAAGAAGAAATCCAAGCGTCACCggtcaaatacaaaaaaaaacgtcaacaATGCCCAAAATGTTCAGTGACATATTCAAAGCGTGAATATTTGTCGAAACACATGAAAACGGAACACAACATAGTTTTGGAAAAGAAAAGACCTGGCCGGGTATCACAATTTCGACAAAACAATGAGGATGATCCACGTCCATACAAATGTGATCAATGTGTTAAAGAATATACAAAATCAAAGCATTTGGCAAGACATAGGCGTACACATTTAGAAAAGAAACGTTGCAATGAATGCAATGAGATTTGCAGTAATTATGCCGATCATATGCTGAAAAAGCATGGTATCGATTTACCACGACCGTTTTcatGTGATATATGTCATAAAACCTATCGAACAAAAACTCACATTCAATCACATATGCGAATACATCGAACAGCTAGTCGTGTATTTACGTGCACCGTATGCCCGaagagtttttgttttgcaaccGATTTGAGGAAGCACATGAAATCACATTCACAAAATCGTTCGGTAATTTGTGATATTTGCGGTGATGCATTCAAATCAGCCGATACATTGAAGTGTCACATGAGGCGACATACAGGGGAAAGACCATATAAATGTTCACAGTGTCCGCGGGCCTTCAGCACGAGCAATAGTTTAGATATACACTTTCGTACGCACACCGGAGAAAAACCctttcaatgtgaattttgtCCAAAACGATTCAGTGATTCATCGACGTTGCTCGTACACAAAAGactacacacaaatgaaaatcccTACATTTGCCATTTGTGTGGCCGTCGTACAAAGCAAGCGAGTAATTTACGATCCCACTATAAACACTTCCATAAGAATAATGATATATCGGGACGtcaaattcgattaaattccCGAATATTTAATCGCTTTTCGCAAAACGAAATTGATGCTCAATTACAAGAATCGGGTGATTTGATGGCTTTATTGGAGCGCGGCATGCTGGAATTTGATCgcgaagagaaagaaaaaaatagccaAATTGAAAAGGCATTACAGGTGATGAGTGCGCCGCAAGTCAGAAATGCGGAAAATAAACTTAGTAAAACTGAAGTCAATTCAATTGACCATGTTGAAGTAAAATATGAAGAGATTAGATCTGAAGTACAATCGTCAATCACTGAACAATGTTCAGCTGACATATCAAATGTGATTCCTGATTTAAAACGACAAACGGCTTCGCCgacaattttaaatgacaattATTCTGAAgacataaaatatgaatatgattCCGTTGAAATTTTAACGAACAAAGATATGTTGAATATTGAAAGTGTTTTTATAGAGGATTCAGAATGTCCACAACCGTCAACTGAAGACTTTTTCATCgatgatattaaaaaagagACCAATTTAAATGACGATTACATCGATGATCAATGGGTGCTTGATAGTTATACCAACCATCCGTCACCATTACCATTCGAAATTATCAAGTATGAATCATTCTGTGGCAAAGACGAACCGAAAACAGAAATAATATCATCAACAAGTGATAGCATTAAGAATAAGCAAACTAAAATTAAACAGAAAAAGGGTGAAAAGGAGAAACACAAAACACCACCGAAAGTCAGTGCTGCAAAGacagaaatggaaaaatgtataCCATGCAATCGAAAATTTCATGATATAGCCAAACATTGGGTGCAATTTCATTCAGGTATTGAGCGACCGTATCAATGTTTCATTTGTCATCGGTATTATAAACGATTCGAGCATCTGAAGTATCATATGAGAACCCATGGTGATGAACGAAATTACGTGTGTCACATATGTGGCAATGCATTCTTTTTAAGCAATGAATTGAGAAAGCATATTATGAATCGACATCAAGTTGAACGACCCTTTAAATGTACATTTcaacaatgtaaaaaatgctttaaaaaTCATCATGCGCTCAATGTACACATGAGAACGCACACCGGCGTTAAACCACATCAGTGTTCTATTTGTTCGGAAGCATTTGCCGCACTGAGTTCGTTGAAGATCCATGAGAGAAAACATACGGGTGAAAAGCCATATAAGtgcaaattttgtaaaaaagcATTCGCCGATTGTTCAACACATAAGCAACATGTCCGAATCCACACCGGTGATAAGCCGTATCAGTGCAGTTTATGTGATCGACGTACGGCTCAAGCGGGAAATTTGAAATCACACTATCGACactatcataaaataattgtaaaaagTGTCAGCATGTATGTGGATAATTCACCATCGGTGTCAattgctcaagaaattcaacgTAATCCATATGAAAGGAGTCATGTCACCCCGTATACATTGACCGATCCAACTCGACAAATCGAAGAATAA
Protein Sequence
MDLLTPKIEIFIEDHDESMIDDKIYDKNNSSSGLTTKITIDKDIKEEIQASPVKYKKKRQQCPKCSVTYSKREYLSKHMKTEHNIVLEKKRPGRVSQFRQNNEDDPRPYKCDQCVKEYTKSKHLARHRRTHLEKKRCNECNEICSNYADHMLKKHGIDLPRPFSCDICHKTYRTKTHIQSHMRIHRTASRVFTCTVCPKSFCFATDLRKHMKSHSQNRSVICDICGDAFKSADTLKCHMRRHTGERPYKCSQCPRAFSTSNSLDIHFRTHTGEKPFQCEFCPKRFSDSSTLLVHKRLHTNENPYICHLCGRRTKQASNLRSHYKHFHKNNDISGRQIRLNSRIFNRFSQNEIDAQLQESGDLMALLERGMLEFDREEKEKNSQIEKALQVMSAPQVRNAENKLSKTEVNSIDHVEVKYEEIRSEVQSSITEQCSADISNVIPDLKRQTASPTILNDNYSEDIKYEYDSVEILTNKDMLNIESVFIEDSECPQPSTEDFFIDDIKKETNLNDDYIDDQWVLDSYTNHPSPLPFEIIKYESFCGKDEPKTEIISSTSDSIKNKQTKIKQKKGEKEKHKTPPKVSAAKTEMEKCIPCNRKFHDIAKHWVQFHSGIERPYQCFICHRYYKRFEHLKYHMRTHGDERNYVCHICGNAFFLSNELRKHIMNRHQVERPFKCTFQQCKKCFKNHHALNVHMRTHTGVKPHQCSICSEAFAALSSLKIHERKHTGEKPYKCKFCKKAFADCSTHKQHVRIHTGDKPYQCSLCDRRTAQAGNLKSHYRHYHKIIVKSVSMYVDNSPSVSIAQEIQRNPYERSHVTPYTLTDPTRQIEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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