Basic Information

Insect: Contarinia nasturtii
Gene Symbol: -
Assembly: GCA_009176525.2
Location: NW:3037983-3040188[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.003 0.11 12.6 7.5 1 23 36 58 36 58 0.95

2 13 2.3e-06 8.4e-05 22.5 2.7 1 23 64 86 64 86 0.95

3 13 3.1e-05 0.0012 18.9 3.5 1 23 92 114 92 114 0.99

4 13 0.00072 0.027 14.6 0.4 1 23 147 169 147 169 0.98

5 13 5.8e-06 0.00021 21.2 4.5 1 23 175 197 175 197 0.98

6 13 9.9e-07 3.7e-05 23.6 1.8 1 23 207 229 207 229 0.98

7 13 3.4e-06 0.00013 21.9 1.9 1 23 235 257 235 257 0.98

8 13 0.0001 0.0038 17.2 2.6 1 23 438 460 438 460 0.98

9 13 4.5e-07 1.7e-05 24.7 2.3 1 23 466 488 466 488 0.99

10 13 0.0052 0.19 11.9 7.7 1 23 494 516 494 516 0.98

11 13 0.00018 0.0068 16.5 1.7 1 23 548 570 548 570 0.97

12 13 4.7e-05 0.0018 18.3 1.2 1 23 576 598 576 598 0.98

13 13 4.6e-06 0.00017 21.5 3.1 1 23 604 626 604 626 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.003	0.11	12.6	7.5	1	23	36	58	36	58	0.95
2	13	2.3e-06	8.4e-05	22.5	2.7	1	23	64	86	64	86	0.95
3	13	3.1e-05	0.0012	18.9	3.5	1	23	92	114	92	114	0.99
4	13	0.00072	0.027	14.6	0.4	1	23	147	169	147	169	0.98
5	13	5.8e-06	0.00021	21.2	4.5	1	23	175	197	175	197	0.98
6	13	9.9e-07	3.7e-05	23.6	1.8	1	23	207	229	207	229	0.98
7	13	3.4e-06	0.00013	21.9	1.9	1	23	235	257	235	257	0.98
8	13	0.0001	0.0038	17.2	2.6	1	23	438	460	438	460	0.98
9	13	4.5e-07	1.7e-05	24.7	2.3	1	23	466	488	466	488	0.99
10	13	0.0052	0.19	11.9	7.7	1	23	494	516	494	516	0.98
11	13	0.00018	0.0068	16.5	1.7	1	23	548	570	548	570	0.97
12	13	4.7e-05	0.0018	18.3	1.2	1	23	576	598	576	598	0.98
13	13	4.6e-06	0.00017	21.5	3.1	1	23	604	626	604	626	0.98

Sequence Information

Coding Sequence: atgaatgttgaacGTGAAGTAAATGTATTGTTGCCAGaattcaaaaacaatgaaaataaaaatgatgatttattAACGGAGTTTGTGGACACGATGGAAAGGAATTTTCTATGCCATTTGTGTTCAAAGACATTTCGtctaaaacatcatttgttgGAGCATTTAAAAGTgcacaacaatgaaaaagagTATCTGTGTAAGATTTGTGGGCGACCGTTTCGACAGAAGAGTCATTTGACCcaacacaataaaattcataccGGCAAAAAGGAATTTAAGTGCGAATGGTGTTCAAAGCAATTTATGCATCGCGGAGATTTAAAACGTCATTGGAAAACACATCGTACACAATTACCGTTTCGGTGTACATTTTGTACTGATCGATTTGCGGATTGTGTTGAAAAGCAATCACATGAAACCGTATGCAGAAGTCGACGGTTCACGTGTTCAATATGTGATTTTGAAACCGACACCAATGATGCATTGAATgtgcataaaaataagcaCATCGGCGAAAGACGATTCATATGTGAAAAATGCCCAAAGGCATTTCGCATGAAACATCATCTCACCGAACATTTGCGAACACACGGCGATGGCaatcaattaaatcgaaaatttcaatgcaatattTGCGAGAAAGCGTTCGCATTGAAGAGCCATTTGaatatacatatgaaatatcaCAATGGTAGCCGTGAATTTATATGTTCGCTTTGCACGAAGGCATTTGTACACAGAGGCGATCTTAATCGCCATTTAAAAACGCATGAAAATGCCGTTTCGGTGGTTGAACCAGCCGTTAAATTTTTAGAAGTCATTGTCAAAGAGGAACCAAGACTAGTGGAGACAGATGAAGTGAATGCAACGATCAAAAGAGAATCAAGACTTGAATCGGATGAAAATCATGCTAATcttaataaaacatttgaaaaaattgatgaagatgatgatgatgatgacaacgatgacgacaacgacagAAATGAAACATTCGAATCATTCGATCATGTTGACGACAGTGATGATgaattcgatcaaaaattAATGGGTAGCACAGAATGTGAATCAAACGATGAAAATCTTCAAATAAAGGAAGAAAATAAGCAAATTAATGAAGAGAAACCATTACCTTTGATCATTACAAAAGTTGAAACACTAACAGAAGAAATAccaaaaacacgaaaaaaatcacgaacaaaagttaaaagaaaattgtctCGCAATGGCGTGAAAggtgttaaaaaaaagacccAACAGAAACAAGAAGATACTCAAAAAGCACAACAATCCAGTCAATCGCATAAGAGATTTGTGTGCGACATTTGTCAGAAAgattttcgaatgaaacatCATCTGGTCGTTCATTTGGTGACACACACCGGCCAAAAGAATTATCAATGCGAAGTGTGTTCGAAAAGCTTTGCTCAATCTAGTCATCTTTCCCTGCATCTCAAAACACATACCAAAACATATGCGTTCCCATGTTCGCATTGTTCAAAGCGCTTTCTCCATCGTGGTGATCTACATCGTCATTTGAAAACCCATCGAGAGCTGCCATTTTCGTGTATTTCTTGCAGCCGTCGATTTTCGGATGAAAAATCCAAGGatttacatgaaaaattatgCACCAGCCAATTGCATAAATGTCCATTGTGTGATTATATTACGACCACTCGTAGCCGTTTAAAAACTCACATGGTGATCCATACGGGTGAAAAAGCATTCCAATGCGAACTTTGTTCGCGCAGATTTGCCTATAAACAAAATTTGGacaatcatttaaaaatacattcgGGTGAAAAGCCATTTGAATGTGAGCAGTGTTCAAGGCCATTCAGATTAAAAGTGCACTTGCAGCGTCACATGAAAACGCATAACAAATAA
Protein Sequence: MNVEREVNVLLPEFKNNENKNDDLLTEFVDTMERNFLCHLCSKTFRLKHHLLEHLKVHNNEKEYLCKICGRPFRQKSHLTQHNKIHTGKKEFKCEWCSKQFMHRGDLKRHWKTHRTQLPFRCTFCTDRFADCVEKQSHETVCRSRRFTCSICDFETDTNDALNVHKNKHIGERRFICEKCPKAFRMKHHLTEHLRTHGDGNQLNRKFQCNICEKAFALKSHLNIHMKYHNGSREFICSLCTKAFVHRGDLNRHLKTHENAVSVVEPAVKFLEVIVKEEPRLVETDEVNATIKRESRLESDENHANLNKTFEKIDEDDDDDDNDDDNDRNETFESFDHVDDSDDEFDQKLMGSTECESNDENLQIKEENKQINEEKPLPLIITKVETLTEEIPKTRKKSRTKVKRKLSRNGVKGVKKKTQQKQEDTQKAQQSSQSHKRFVCDICQKDFRMKHHLVVHLVTHTGQKNYQCEVCSKSFAQSSHLSLHLKTHTKTYAFPCSHCSKRFLHRGDLHRHLKTHRELPFSCISCSRRFSDEKSKDLHEKLCTSQLHKCPLCDYITTTRSRLKTHMVIHTGEKAFQCELCSRRFAYKQNLDNHLKIHSGEKPFECEQCSRPFRLKVHLQRHMKTHNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -