Basic Information

Insect: Contarinia nasturtii
Gene Symbol: -
Assembly: GCA_009176525.2
Location: NW:6137834-6143797[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6e-05 0.0022 18.0 1.3 1 23 158 180 158 180 0.95

2 15 0.00019 0.007 16.4 0.8 1 23 186 208 186 208 0.98

3 15 0.00016 0.0059 16.6 0.0 1 23 303 325 303 325 0.96

4 15 0.0074 0.28 11.4 0.1 2 23 332 353 331 353 0.97

5 15 2.8e-06 0.0001 22.2 1.7 1 23 384 406 384 406 0.98

6 15 0.062 2.3 8.5 0.3 1 23 422 444 422 444 0.94

7 15 0.0077 0.28 11.4 0.7 2 23 451 473 450 473 0.92

8 15 0.057 2.1 8.6 2.4 2 19 481 498 480 499 0.95

9 15 4.8e-05 0.0018 18.3 6.9 1 23 508 530 508 530 0.97

10 15 0.0035 0.13 12.4 0.6 2 23 536 557 535 557 0.96

11 15 5.8e-06 0.00022 21.2 0.5 1 23 565 587 565 587 0.98

12 15 0.0056 0.21 11.8 0.2 3 23 595 615 593 615 0.97

13 15 2.3e-05 0.00087 19.3 0.2 1 23 621 643 621 644 0.95

14 15 0.076 2.8 8.2 0.2 1 23 658 680 658 680 0.96

15 15 0.00033 0.012 15.6 0.0 2 23 1064 1085 1063 1085 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6e-05	0.0022	18.0	1.3	1	23	158	180	158	180	0.95
2	15	0.00019	0.007	16.4	0.8	1	23	186	208	186	208	0.98
3	15	0.00016	0.0059	16.6	0.0	1	23	303	325	303	325	0.96
4	15	0.0074	0.28	11.4	0.1	2	23	332	353	331	353	0.97
5	15	2.8e-06	0.0001	22.2	1.7	1	23	384	406	384	406	0.98
6	15	0.062	2.3	8.5	0.3	1	23	422	444	422	444	0.94
7	15	0.0077	0.28	11.4	0.7	2	23	451	473	450	473	0.92
8	15	0.057	2.1	8.6	2.4	2	19	481	498	480	499	0.95
9	15	4.8e-05	0.0018	18.3	6.9	1	23	508	530	508	530	0.97
10	15	0.0035	0.13	12.4	0.6	2	23	536	557	535	557	0.96
11	15	5.8e-06	0.00022	21.2	0.5	1	23	565	587	565	587	0.98
12	15	0.0056	0.21	11.8	0.2	3	23	595	615	593	615	0.97
13	15	2.3e-05	0.00087	19.3	0.2	1	23	621	643	621	644	0.95
14	15	0.076	2.8	8.2	0.2	1	23	658	680	658	680	0.96
15	15	0.00033	0.012	15.6	0.0	2	23	1064	1085	1063	1085	0.97

Sequence Information

Coding Sequence: ATGGATCAAGAGTATGGAATAGCTTGGGCCCAAGGGGTCCACTCTGATGAACATGGCCATCAAATAATATGTGAATCTGGTGCCGatgatttaattgaagaaaataatgacaTTGAAGAGGATGAAGAATATTTGGTTGGCGAAGAGATAATCCCATCAACCGAAATTATAACCATATCGAATAGTTTGGATCAAATTGCTgccgaaaatttaatttacatgGCACAGGATGGTAGCGTTGCGAATATGGGTGACCTTATTGAAGAACAAGTTGATCAAGTCGACAATGCTGACTATAACGAGCAACAGTATTTTGAGTGCACCGTCACCGAAGAGGTCATCACCGATGATTGGGTGCAGCAACAAGGTGAAGATagAGTCGAGGTGCCTGTATATCAATTGGGagtaaatgaacaaaatgaagagGTACTTGTGCCATTGCCAACCGATGAGTATACAACATCACGTCCATATCCATGTGATTTTTGTAGTCGTCGATTTCGTAAAAAGACCAATCTCATGAATCACATGGTTGCCCACAAAAATGTAAAGCCACATACTTGCAATTTATGCGGTGCACGTTACATTCGCAAAATAGATttaatgaatcatttgaaagtTCATGCACAAGTACCAGATCAAAATATCGAATAcaataatgatgataaaaGTGCCGATGAACAAGACGATCTTGAAGAAGATTCATTATTAACAACTCTGAAAAGTGAACCGGTGGGTAAACCACGTCGCCGAACTGGACCAATTTTGCAACGAAAAGtagtaaaaattgaaagtggCGGTAGAAGAACCGCACAAAAAAAGttatataatgaaaatgttggcACAAGTAGCCACTATGAATCCATTATACCCGATCATGTAACGGCAATTGATTCAAGTAAACCGTTCGTGTGTCAAGTGTGTGGTGTCGCTTTTAGTCGTGAAAAAGCCCTTAATGCACACGTCGCACTGCATGGCATTGGTAATGCGCTCGAGTGTGAAACATGTAACGAAGTATTTTGGACAGTGGAATCATTGCAACAACATCAGAAAATCCATGAAGTCGATGAAGAAAGCAGCGGTTCAGAATATGAACCAGATGGTGATAAAACCGCTAGTGACGAAGATTTCGATCCAAAATATGgcaattattattgtaatgTGTGTGGCATGTCATTTCATCGACCCGATTTACTTAAACGTCATGCAAAAACCCATAAAAAAGACTAtacttcaaataaaaatgacaacacAACCGAAAGTCATTGTTGCAATGTGTGCGGCAATACATTCGAAGAAGCATTGGATCTACTTGCACATGCCGAAATTCATACGAGAGCCTCAATTCAAAAGTGCACATTGTGTGGCGAATCGTTTACACATGACAACGAAATTCGCCAGCATATTGTTAACGTACATGGCAGAGAGCTGACAAGTACAACGTGTCGAATGTGTGGCAAACACTGTAAAGACGAACGTACGCTAATGAAACATGCATGGGATCATTCCAAAGAGAAAAACCATTCCTGTACGAAGTGTGGCAaaacatttcacaataaaGCACGACTCAGACGTCACATGCAATCACATCGCAACAAATCTGTATCGTGTAATGTATGCGGCGAAAATTTCCCAGATGGTCGTTCATTGATGAATCATCGACATTCCCATTCAAATTTATCGGGTCGACAATTTCCGTGCCGTGAATGTGGTAAAACATTTGGATCGCGTAGCTCACAACAAATTCACATGAGAATACATACTGGTGAACGACCTTATGGTTGTCGGTTTTGTTGGAAGGCTTTCGCAGATGGTGGTACTCTACGTAAACACGAACGCATTCATACAGGCGAAAAACCGTATGCATGCCCTGTATGCCCAAGAGCCTTCAATCAACGCGTGGTTTTACGTGAACATATTCGTTCACATCATTCACAACCCGATCCAAACTATGAAGACTCATTGATGCCATACTATTGCACTGTTTGCGGCAACCTATACAAAACGTCACAGGaaattattcaacatttgATTGAACATAGTGATGCAAATACGGTATCAAACCGCCAACCAGTTgTTGGGCCCCGAAAGTACAAACGTCGACGCAAGCTAAAGCCAGAAGAGCTCGAAACGTTCcgcaaatcgaaaaatgaaaccacCACAACAAAAACCACATCAAAGAGAACATCTCGCAAGCGAGATGTATCTGAACAGAGTGACACGAATTATAGCTCATCGTATGAACATCAAGAGGATGTGATTTATGAGTCCAGTCGAAATGACAATGATACAGATAATATTGAAGTGGACGAGCCAGAAATTCAAAGAATACACAGTGTTGGAACGCGTGTCAAACCGGAATCATATGATTCAGATCCTCTCTATACCGGCGAGTATCTCGAAGAAACGGCACCAAAACGAAAATCGCCAACTAAAAGACAAACAACTGTTGCATCACAATCATCCACATCGTATTACGTACCAGTAGCACAAAGCACCAAGAAAAAAGTGGTGATTGAAACAAAAGGCAGTCGAACGACAACAAAAGTTAAGAAAGTCATAGcatcgaatcaaataaaattgacgcCACCTGAAATCGATAATGGTGGCACACGTCGATCGAGCCGTACCAAACaaccaacaaataaaaaaatggaatcattGCCATCACCATCGAAGTCAATGACAAATGGAACGCCACGATCAAAATCACAAGCGAACGCTTTGAGTAATTTATATGGCGAACTATCAttaaaaaagacaacaaactTAAATCCAGATGTTGTAAGCGATTTGGAAGGAATTTTAGGTTCACCAATTAAAACAACACGTGAAACACATCGTTACGAACAAGTATCAATATCCGAGAATGTGAATGCAAAAAACGTTGACGTCAAACCACACatcaatgatgaaataaagCCAGCGACTCGGTCCAGTAAACGGTTAAGCAATCGTGTTCAACCAACCGTCGAATTACCGCTAAAGGCAAAAACGGTAAGAACCGcgaaaaaattgtcaacagCCACTGTTGCTGCATACCATGCTGATCACATAAGCGAATACAGTCAAGAGAGTCAAGACGATCCATTTggcaatttacaaaataatatcaGCGAAGGTGTTGTGATTGtaaaacaagagaaagagGTTTCATACACAATGACAGATGATAGTACTAATTTACTTGTATGTGAAATGTGCTCAGCCGTATTCACCGATCGTGAACTATTGCTTGCGCATGTTCGTGTACATATTTGA
Protein Sequence: MDQEYGIAWAQGVHSDEHGHQIICESGADDLIEENNDIEEDEEYLVGEEIIPSTEIITISNSLDQIAAENLIYMAQDGSVANMGDLIEEQVDQVDNADYNEQQYFECTVTEEVITDDWVQQQGEDRVEVPVYQLGVNEQNEEVLVPLPTDEYTTSRPYPCDFCSRRFRKKTNLMNHMVAHKNVKPHTCNLCGARYIRKIDLMNHLKVHAQVPDQNIEYNNDDKSADEQDDLEEDSLLTTLKSEPVGKPRRRTGPILQRKVVKIESGGRRTAQKKLYNENVGTSSHYESIIPDHVTAIDSSKPFVCQVCGVAFSREKALNAHVALHGIGNALECETCNEVFWTVESLQQHQKIHEVDEESSGSEYEPDGDKTASDEDFDPKYGNYYCNVCGMSFHRPDLLKRHAKTHKKDYTSNKNDNTTESHCCNVCGNTFEEALDLLAHAEIHTRASIQKCTLCGESFTHDNEIRQHIVNVHGRELTSTTCRMCGKHCKDERTLMKHAWDHSKEKNHSCTKCGKTFHNKARLRRHMQSHRNKSVSCNVCGENFPDGRSLMNHRHSHSNLSGRQFPCRECGKTFGSRSSQQIHMRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACPVCPRAFNQRVVLREHIRSHHSQPDPNYEDSLMPYYCTVCGNLYKTSQEIIQHLIEHSDANTVSNRQPVVGPRKYKRRRKLKPEELETFRKSKNETTTTKTTSKRTSRKRDVSEQSDTNYSSSYEHQEDVIYESSRNDNDTDNIEVDEPEIQRIHSVGTRVKPESYDSDPLYTGEYLEETAPKRKSPTKRQTTVASQSSTSYYVPVAQSTKKKVVIETKGSRTTTKVKKVIASNQIKLTPPEIDNGGTRRSSRTKQPTNKKMESLPSPSKSMTNGTPRSKSQANALSNLYGELSLKKTTNLNPDVVSDLEGILGSPIKTTRETHRYEQVSISENVNAKNVDVKPHINDEIKPATRSSKRLSNRVQPTVELPLKAKTVRTAKKLSTATVAAYHADHISEYSQESQDDPFGNLQNNISEGVVIVKQEKEVSYTMTDDSTNLLVCEMCSAVFTDRELLLAHVRVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -